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Items: 1 to 50 of 69

1.

Bacterial communities in the small intestine respond differently to those in the caecum and colon in mice fed low- and high-fat diets.

Onishi JC, Campbell S, Moreau M, Patel F, Brooks AI, Zhou YX, Häggblom MM, Storch J.

Microbiology. 2017 Aug;163(8):1189-1197. doi: 10.1099/mic.0.000496. Epub 2017 Jul 26.

2.

Gene expression in major depressive disorder.

Jansen R, Penninx BW, Madar V, Xia K, Milaneschi Y, Hottenga JJ, Hammerschlag AR, Beekman A, van der Wee N, Smit JH, Brooks AI, Tischfield J, Posthuma D, Schoevers R, van Grootheest G, Willemsen G, de Geus EJ, Boomsma DI, Wright FA, Zou F, Sun W, Sullivan PF.

Mol Psychiatry. 2016 Mar;21(3):444. doi: 10.1038/mp.2015.94. Epub 2015 Jun 23. No abstract available.

PMID:
26100536
3.

Correction: Novel Genetic Locus Implicated for HIV-1 Acquisition with Putative Regulatory Links to HIV Replication and Infectivity: A Genome-Wide Association Study.

Johnson EO, Hancock DB, Gaddis NC, Levy JL, Page G, Novak SP, Glasheen C, Saccone NL, Rice JP, Moreau MP, Doheny KF, Romm JM, Brooks AI, Kral AH.

PLoS One. 2015 May 29;10(5):e0129671. doi: 10.1371/journal.pone.0129671. eCollection 2015. No abstract available.

4.

Gene expression in major depressive disorder.

Jansen R, Penninx BW, Madar V, Xia K, Milaneschi Y, Hottenga JJ, Hammerschlag AR, Beekman A, van der Wee N, Smit JH, Brooks AI, Tischfield J, Posthuma D, Schoevers R, van Grootheest G, Willemsen G, de Geus EJ, Boomsma DI, Wright FA, Zou F, Sun W, Sullivan PF.

Mol Psychiatry. 2016 Mar;21(3):339-47. doi: 10.1038/mp.2015.57. Epub 2015 May 26. Erratum in: Mol Psychiatry. 2016 Mar;21(3):444.

PMID:
26008736
5.

Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.

Johnson EO, Hancock DB, Gaddis NC, Levy JL, Page G, Novak SP, Glasheen C, Saccone NL, Rice JP, Moreau MP, Doheny KF, Romm JM, Brooks AI, Aouizerat BE, Bierut LJ, Kral AH.

PLoS One. 2015 Mar 18;10(3):e0118149. doi: 10.1371/journal.pone.0118149. eCollection 2015. Erratum in: PLoS One. 2015;10(5):e0129671.

6.

De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.

Dong S, Walker MF, Carriero NJ, DiCola M, Willsey AJ, Ye AY, Waqar Z, Gonzalez LE, Overton JD, Frahm S, Keaney JF 3rd, Teran NA, Dea J, Mandell JD, Hus Bal V, Sullivan CA, DiLullo NM, Khalil RO, Gockley J, Yuksel Z, Sertel SM, Ercan-Sencicek AG, Gupta AR, Mane SM, Sheldon M, Brooks AI, Roeder K, Devlin B, State MW, Wei L, Sanders SJ.

Cell Rep. 2014 Oct 9;9(1):16-23. doi: 10.1016/j.celrep.2014.08.068. Epub 2014 Oct 2.

7.

Ethanol treatment of lymphoblastoid cell lines from alcoholics and non-alcoholics causes many subtle changes in gene expression.

McClintick JN, Brooks AI, Deng L, Liang L, Wang JC, Kapoor M, Xuei X, Foroud T, Tischfield JA, Edenberg HJ.

Alcohol. 2014 Sep;48(6):603-10. doi: 10.1016/j.alcohol.2014.07.004. Epub 2014 Jul 22.

8.

Research capacity. Enabling the genomic revolution in Africa.

H3Africa Consortium, Rotimi C, Abayomi A, Abimiku A, Adabayeri VM, Adebamowo C, Adebiyi E, Ademola AD, Adeyemo A, Adu D, Affolabi D, Agongo G, Ajayi S, Akarolo-Anthony S, Akinyemi R, Akpalu A, Alberts M, Alonso Betancourt O, Alzohairy AM, Ameni G, Amodu O, Anabwani G, Andersen K, Arogundade F, Arulogun O, Asogun D, Bakare R, Balde N, Baniecki ML, Beiswanger C, Benkahla A, Bethke L, Boehnke M, Boima V, Brandful J, Brooks AI, Brosius FC, Brown C, Bucheton B, Burke DT, Burnett BG, Carrington-Lawrence S, Carstens N, Chisi J, Christoffels A, Cooper R, Cordell H, Crowther N, Croxton T, de Vries J, Derr L, Donkor P, Doumbia S, Duncanson A, Ekem I, El Sayed A, Engel ME, Enyaru JC, Everett D, Fadlelmola FM, Fakunle E, Fischbeck KH, Fischer A, Folarin O, Gamieldien J, Garry RF, Gaseitsiwe S, Gbadegesin R, Ghansah A, Giovanni M, Goesbeck P, Gomez-Olive FX, Grant DS, Grewal R, Guyer M, Hanchard NA, Happi CT, Hazelhurst S, Hennig BJ, Hertz- C, Fowler, Hide W, Hilderbrandt F, Hugo-Hamman C, Ibrahim ME, James R, Jaufeerally-Fakim Y, Jenkins C, Jentsch U, Jiang PP, Joloba M, Jongeneel V, Joubert F, Kader M, Kahn K, Kaleebu P, Kapiga SH, Kassim SK, Kasvosve I, Kayondo J, Keavney B, Kekitiinwa A, Khan SH, Kimmel P, King MC, Kleta R, Koffi M, Kopp J, Kretzler M, Kumuthini J, Kyobe S, Kyobutungi C, Lackland DT, Lacourciere KA, Landouré G, Lawlor R, Lehner T, Lesosky M, Levitt N, Littler K, Lombard Z, Loring JF, Lyantagaye S, Macleod A, Madden EB, Mahomva CR, Makani J, Mamven M, Marape M, Mardon G, Marshall P, Martin DP, Masiga D, Mason R, Mate-Kole M, Matovu E, Mayige M, Mayosi BM, Mbanya JC, McCurdy SA, McCarthy MI, McIlleron H, Mc'Ligeyo SO, Merle C, Mocumbi AO, Mondo C, Moran JV, Motala A, Moxey-Mims M, Mpoloka WS, Msefula CL, Mthiyane T, Mulder N, Mulugeta Gh, Mumba D, Musuku J, Nagdee M, Nash O, Ndiaye D, Nguyen AQ, Nicol M, Nkomazana O, Norris S, Nsangi B, Nyarko A, Nyirenda M, Obe E, Obiakor R, Oduro A, Ofori-Acquah SF, Ogah O, Ogendo S, Ohene-Frempong K, Ojo A, Olanrewaju T, Oli J, Osafo C, Ouwe Missi Oukem-Boyer O, Ovbiagele B, Owen A, Owolabi MO, Owolabi L, Owusu-Dabo E, Pare G, Parekh R, Patterton HG, Penno MB, Peterson J, Pieper R, Plange-Rhule J, Pollak M, Puzak J, Ramesar RS, Ramsay M, Rasooly R, Reddy S, Sabeti PC, Sagoe K, Salako T, Samassékou O, Sandhu MS, Sankoh O, Sarfo FS, Sarr M, Shaboodien G, Sidibe I, Simo G, Simuunza M, Smeeth L, Sobngwi E, Soodyall H, Sorgho H, Sow Bah O, Srinivasan S, Stein DJ, Susser ES, Swanepoel C, Tangwa G, Tareila A, Tastan Bishop O, Tayo B, Tiffin N, Tinto H, Tobin E, Tollman SM, Traoré M, Treadwell MJ, Troyer J, Tsimako-Johnstone M, Tukei V, Ulasi I, Ulenga N, van Rooyen B, Wachinou AP, Waddy SP, Wade A, Wayengera M, Whitworth J, Wideroff L, Winkler CA, Winnicki S, Wonkam A, Yewondwos M, sen T, Yozwiak N, Zar H.

Science. 2014 Jun 20;344(6190):1346-8. doi: 10.1126/science.1251546. No abstract available.

9.

Heritability and genomics of gene expression in peripheral blood.

Wright FA, Sullivan PF, Brooks AI, Zou F, Sun W, Xia K, Madar V, Jansen R, Chung W, Zhou YH, Abdellaoui A, Batista S, Butler C, Chen G, Chen TH, D'Ambrosio D, Gallins P, Ha MJ, Hottenga JJ, Huang S, Kattenberg M, Kochar J, Middeldorp CM, Qu A, Shabalin A, Tischfield J, Todd L, Tzeng JY, van Grootheest G, Vink JM, Wang Q, Wang W, Wang W, Willemsen G, Smit JH, de Geus EJ, Yin Z, Penninx BW, Boomsma DI.

Nat Genet. 2014 May;46(5):430-7. doi: 10.1038/ng.2951. Epub 2014 Apr 13.

10.

Sex differences in the human peripheral blood transcriptome.

Jansen R, Batista S, Brooks AI, Tischfield JA, Willemsen G, van Grootheest G, Hottenga JJ, Milaneschi Y, Mbarek H, Madar V, Peyrot W, Vink JM, Verweij CL, de Geus EJ, Smit JH, Wright FA, Sullivan PF, Boomsma DI, Penninx BW.

BMC Genomics. 2014 Jan 17;15:33. doi: 10.1186/1471-2164-15-33.

11.

Multiple distinct CHRNB3-CHRNA6 variants are genetic risk factors for nicotine dependence in African Americans and European Americans.

Culverhouse RC, Johnson EO, Breslau N, Hatsukami DK, Sadler B, Brooks AI, Hesselbrock VM, Schuckit MA, Tischfield JA, Goate AM, Saccone NL, Bierut LJ.

Addiction. 2014 May;109(5):814-22. doi: 10.1111/add.12478. Epub 2014 Feb 18.

12.

A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.

Wang JC, Foroud T, Hinrichs AL, Le NX, Bertelsen S, Budde JP, Harari O, Koller DL, Wetherill L, Agrawal A, Almasy L, Brooks AI, Bucholz K, Dick D, Hesselbrock V, Johnson EO, Kang S, Kapoor M, Kramer J, Kuperman S, Madden PA, Manz N, Martin NG, McClintick JN, Montgomery GW, Nurnberger JI Jr, Rangaswamy M, Rice J, Schuckit M, Tischfield JA, Whitfield JB, Xuei X, Porjesz B, Heath AC, Edenberg HJ, Bierut LJ, Goate AM.

Mol Psychiatry. 2013 Nov;18(11):1218-24. doi: 10.1038/mp.2012.143. Epub 2012 Oct 23.

13.

Copy number variations in 6q14.1 and 5q13.2 are associated with alcohol dependence.

Lin P, Hartz SM, Wang JC, Agrawal A, Zhang TX, McKenna N, Bucholz K, Brooks AI, Tischfield JA, Edenberg HJ, Hesselbrock VM, Kramer JR, Kuperman S, Schuckit MA, Goate AM, Bierut LJ, Rice JP; COGA Collaborators; COGEND Collaborators, GENEVA.

Alcohol Clin Exp Res. 2012 Sep;36(9):1512-8. doi: 10.1111/j.1530-0277.2012.01758.x. Epub 2012 Jun 15.

14.

Significant effects of antiretroviral therapy on global gene expression in brain tissues of patients with HIV-1-associated neurocognitive disorders.

Borjabad A, Morgello S, Chao W, Kim SY, Brooks AI, Murray J, Potash MJ, Volsky DJ.

PLoS Pathog. 2011 Sep;7(9):e1002213. doi: 10.1371/journal.ppat.1002213. Epub 2011 Sep 1.

15.

Copy number variation accuracy in genome-wide association studies.

Lin P, Hartz SM, Wang JC, Krueger RF, Foroud TM, Edenberg HJ, Nurnberger JI Jr, Brooks AI, Tischfield JA, Almasy L, Webb BT, Hesselbrock VM, Porjesz B, Goate AM, Bierut LJ, Rice JP; COGA Collaborators; COGEND Collaborators; GENEVA Investigators.

Hum Hered. 2011;71(3):141-7. doi: 10.1159/000324683. Epub 2011 Jul 20.

16.

Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism.

Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D, Chu SH, Moreau MP, Gupta AR, Thomson SA, Mason CE, Bilguvar K, Celestino-Soper PB, Choi M, Crawford EL, Davis L, Wright NR, Dhodapkar RM, DiCola M, DiLullo NM, Fernandez TV, Fielding-Singh V, Fishman DO, Frahm S, Garagaloyan R, Goh GS, Kammela S, Klei L, Lowe JK, Lund SC, McGrew AD, Meyer KA, Moffat WJ, Murdoch JD, O'Roak BJ, Ober GT, Pottenger RS, Raubeson MJ, Song Y, Wang Q, Yaspan BL, Yu TW, Yurkiewicz IR, Beaudet AL, Cantor RM, Curland M, Grice DE, Günel M, Lifton RP, Mane SM, Martin DM, Shaw CA, Sheldon M, Tischfield JA, Walsh CA, Morrow EM, Ledbetter DH, Fombonne E, Lord C, Martin CL, Brooks AI, Sutcliffe JS, Cook EH Jr, Geschwind D, Roeder K, Devlin B, State MW.

Neuron. 2011 Jun 9;70(5):863-85. doi: 10.1016/j.neuron.2011.05.002.

17.

Xenomitochondrial mice: investigation into mitochondrial compensatory mechanisms.

Cannon MV, Dunn DA, Irwin MH, Brooks AI, Bartol FF, Trounce IA, Pinkert CA.

Mitochondrion. 2011 Jan;11(1):33-9. doi: 10.1016/j.mito.2010.07.003. Epub 2010 Jul 16.

18.

The Netherlands Twin Register biobank: a resource for genetic epidemiological studies.

Willemsen G, de Geus EJ, Bartels M, van Beijsterveldt CE, Brooks AI, Estourgie-van Burk GF, Fugman DA, Hoekstra C, Hottenga JJ, Kluft K, Meijer P, Montgomery GW, Rizzu P, Sondervan D, Smit AB, Spijker S, Suchiman HE, Tischfield JA, Lehner T, Slagboom PE, Boomsma DI.

Twin Res Hum Genet. 2010 Jun;13(3):231-45. doi: 10.1375/twin.13.3.231.

PMID:
20477721
19.

Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.

Borjabad A, Brooks AI, Volsky DJ.

J Neuroimmune Pharmacol. 2010 Mar;5(1):44-62. doi: 10.1007/s11481-009-9167-1. Epub 2009 Aug 21. Review.

20.

Effect of the methoxychlor metabolite HPTE on the rat ovarian granulosa cell transcriptome in vitro.

Harvey CN, Esmail M, Wang Q, Brooks AI, Zachow R, Uzumcu M.

Toxicol Sci. 2009 Jul;110(1):95-106. doi: 10.1093/toxsci/kfp089. Epub 2009 May 4.

21.

Inhibition of autoregulated TGFbeta signaling simultaneously enhances proliferation and differentiation of kidney epithelium and promotes repair following renal ischemia.

Geng H, Lan R, Wang G, Siddiqi AR, Naski MC, Brooks AI, Barnes JL, Saikumar P, Weinberg JM, Venkatachalam MA.

Am J Pathol. 2009 Apr;174(4):1291-308. doi: 10.2353/ajpath.2009.080295.

22.

Oligonucleotide microarrays reveal regulated genes related to inward arterial remodeling induced by urokinase plasminogen activator.

Plekhanova O, Berk BC, Bashtrykov P, Brooks AI, Tkachuk V, Parfyonova Y.

J Vasc Res. 2009;46(3):177-87. doi: 10.1159/000156703. Epub 2008 Sep 24.

23.

Big results from small samples: evaluation of amplification protocols for gene expression profiling.

Viale A, Li J, Tiesman J, Hester S, Massimi A, Griffin C, Grills G, Khitrov G, Lilley K, Knudtson K, Ward B, Kornacker K, Chu CY, Auer H, Brooks AI.

J Biomol Tech. 2007 Jul;18(3):150-61.

24.

Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine.

Grice DE, Reenilä I, Männistö PT, Brooks AI, Smith GG, Golden GT, Buxbaum JD, Berrettini WH.

BMC Genomics. 2007 Mar 16;8:76.

25.

Preparing DNA from Mammalian sources for genotyping.

Sahota A, Brooks AI, Tischfield JA.

CSH Protoc. 2007 Aug 1;2007:pdb.top19. doi: 10.1101/pdb.top19.

PMID:
21357154
26.

Preparing DNA from saliva for genotyping.

Sahota A, Brooks AI, Tischfield JA.

CSH Protoc. 2007 Aug 1;2007:pdb.prot4831. doi: 10.1101/pdb.prot4831.

PMID:
21357152
27.

Preparing DNA from blood for genotyping.

Sahota A, Brooks AI, Tischfield JA, King IB.

CSH Protoc. 2007 Aug 1;2007:pdb.prot4830. doi: 10.1101/pdb.prot4830.

PMID:
21357151
28.

Preparing DNA from cell pellets for genotyping.

Sahota A, Brooks AI, Tischfield JA.

CSH Protoc. 2007 Aug 1;2007:pdb.prot4829. doi: 10.1101/pdb.prot4829.

PMID:
21357150
29.

TCDD-induced alterations in gene expression profiles of the developing mouse paw do not influence morphological differentiation of this potential target tissue.

Bemis JC, Alejandro NF, Nazarenko DA, Brooks AI, Baggs RB, Gasiewicz TA.

Toxicol Sci. 2007 Jan;95(1):240-8. Epub 2006 Oct 11.

PMID:
17035482
30.

The ABRF MARG microarray survey 2005: taking the pulse of the microarray field.

Knudtson KL, Auer H, Brooks AI, Griffin C, Grills G, Hester S, Khitrov G, Lilley KS, Massimi A, Tiesman JP, Viale A.

J Biomol Tech. 2006 Apr;17(2):176-86.

31.

A novel role of circadian transcription factor DBP in hippocampal plasticity.

Klugmann M, Leichtlein CB, Symes CW, Klaussner BC, Brooks AI, Young D, During MJ.

Mol Cell Neurosci. 2006 Feb;31(2):303-14. Epub 2005 Oct 27.

PMID:
16257226
32.

Long term metabolic arrest and recovery of HEK293 spheroids involves NF-kappaB signaling and sustained JNK activation.

Jack GD, Garst JF, Cabrera MC, DeSantis AM, Slaughter SM, Jervis J, Brooks AI, Potts M, Helm RF.

J Cell Physiol. 2006 Feb;206(2):526-36. Erratum in: J Cell Physiol. 2006 Dec;209(3):1055. Mead, E Andrew [removed].

PMID:
16155929
33.

Role of the MEOX2 homeobox gene in neurovascular dysfunction in Alzheimer disease.

Wu Z, Guo H, Chow N, Sallstrom J, Bell RD, Deane R, Brooks AI, Kanagala S, Rubio A, Sagare A, Liu D, Li F, Armstrong D, Gasiewicz T, Zidovetzki R, Song X, Hofman F, Zlokovic BV.

Nat Med. 2005 Sep;11(9):959-65. Epub 2005 Aug 14.

35.

The effects of normalization on the correlation structure of microarray data.

Qiu X, Brooks AI, Klebanov L, Yakovlev N.

BMC Bioinformatics. 2005 May 16;6:120.

36.

Reelin signaling is impaired in autism.

Fatemi SH, Snow AV, Stary JM, Araghi-Niknam M, Reutiman TJ, Lee S, Brooks AI, Pearce DA.

Biol Psychiatry. 2005 Apr 1;57(7):777-87.

PMID:
15820235
37.

Developmental pesticide exposures and the Parkinson's disease phenotype.

Cory-Slechta DA, Thiruchelvam M, Richfield EK, Barlow BK, Brooks AI.

Birth Defects Res A Clin Mol Teratol. 2005 Mar;73(3):136-9.

PMID:
15751039
38.

A mouse model for study of systemic HIV-1 infection, antiviral immune responses, and neuroinvasiveness.

Potash MJ, Chao W, Bentsman G, Paris N, Saini M, Nitkiewicz J, Belem P, Sharer L, Brooks AI, Volsky DJ.

Proc Natl Acad Sci U S A. 2005 Mar 8;102(10):3760-5. Epub 2005 Feb 23.

39.
40.

Altered gene expression in the eye of a mouse model for batten disease.

Chattopadhyay S, Kingsley E, Serour A, Curran TM, Brooks AI, Pearce DA.

Invest Ophthalmol Vis Sci. 2004 Sep;45(9):2893-905.

PMID:
15326100
41.

Skeletal muscle gene expression profiles in 20-29 year old and 65-71 year old women.

Welle S, Brooks AI, Delehanty JM, Needler N, Bhatt K, Shah B, Thornton CA.

Exp Gerontol. 2004 Mar;39(3):369-77.

PMID:
15036396
42.

Inhibition of neuronal phenotype by PTEN in PC12 cells.

Musatov S, Roberts J, Brooks AI, Pena J, Betchen S, Pfaff DW, Kaplitt MG.

Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3627-31. Epub 2004 Feb 27.

43.

Effects of human immunodeficiency virus type 1 on astrocyte gene expression and function: potential role in neuropathogenesis.

Wang Z, Trillo-Pazos G, Kim SY, Canki M, Morgello S, Sharer LR, Gelbard HA, Su ZZ, Kang DC, Brooks AI, Fisher PB, Volsky DJ.

J Neurovirol. 2004;10 Suppl 1:25-32. Review.

PMID:
14982736
44.

Gene expression profile of aging in human muscle.

Welle S, Brooks AI, Delehanty JM, Needler N, Thornton CA.

Physiol Genomics. 2003 Jul 7;14(2):149-59.

PMID:
12783983
45.

Defects in expression of genes related to synaptic vesicle trafficking in frontal cortex of Alzheimer's disease.

Yao PJ, Zhu M, Pyun EI, Brooks AI, Therianos S, Meyers VE, Coleman PD.

Neurobiol Dis. 2003 Mar;12(2):97-109.

PMID:
12667465
46.

Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment.

Wagner VE, Bushnell D, Passador L, Brooks AI, Iglewski BH.

J Bacteriol. 2003 Apr;185(7):2080-95.

47.

Early changes in gene expression in two models of Batten disease.

Elshatory Y, Brooks AI, Chattopadhyay S, Curran TM, Gupta P, Ramalingam V, Hofmann SL, Pearce DA.

FEBS Lett. 2003 Mar 13;538(1-3):207-12.

48.

Functional categorization of gene expression changes in the cerebellum of a Cln3-knockout mouse model for Batten disease.

Brooks AI, Chattopadhyay S, Mitchison HM, Nussbaum RL, Pearce DA.

Mol Genet Metab. 2003 Jan;78(1):17-30.

PMID:
12559844
49.

Prediction of biologically significant components from microarray data: Independently Consistent Expression Discriminator (ICED).

Bijlani R, Cheng Y, Pearce DA, Brooks AI, Ogihara M.

Bioinformatics. 2003 Jan;19(1):62-70.

PMID:
12499294
50.

Computational method for reducing variance with Affymetrix microarrays.

Welle S, Brooks AI, Thornton CA.

BMC Bioinformatics. 2002 Aug 30;3:23.

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