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Items: 1 to 50 of 244

1.

Mutational analysis of a Drosophila neuroblast enhancer governing nubbin expression during CNS development.

Ross J, Kuzin A, Brody T, Odenwald WF.

Genesis. 2018 Jul 13. doi: 10.1002/dvg.23237. [Epub ahead of print]

PMID:
30005136
2.

Structure and cis-regulatory analysis of a Drosophila grainyhead neuroblast enhancer.

Kuzin A, Smith S, Brody T, Odenwald WF.

Genesis. 2018 Mar;56(3):e23094. doi: 10.1002/dvg.23094.

PMID:
29417712
3.

Flavivirus and Filovirus EvoPrinters: New alignment tools for the comparative analysis of viral evolution.

Brody T, Yavatkar AS, Park DS, Kuzin A, Ross J, Odenwald WF.

PLoS Negl Trop Dis. 2017 Jun 16;11(6):e0005673. doi: 10.1371/journal.pntd.0005673. eCollection 2017 Jun.

4.

cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers.

Ross J, Kuzin A, Brody T, Odenwald WF.

BMC Genomics. 2015 Sep 16;16:700. doi: 10.1186/s12864-015-1897-2.

5.

Making Drosophila lineage-restricted drivers via patterned recombination in neuroblasts.

Awasaki T, Kao CF, Lee YJ, Yang CP, Huang Y, Pfeiffer BD, Luan H, Jing X, Huang YF, He Y, Schroeder MD, Kuzin A, Brody T, Zugates CT, Odenwald WF, Lee T.

Nat Neurosci. 2014 Apr;17(4):631-7. doi: 10.1038/nn.3654. Epub 2014 Feb 23.

PMID:
24561995
6.

Drosophila intermediate neural progenitors produce lineage-dependent related series of diverse neurons.

Wang YC, Yang JS, Johnston R, Ren Q, Lee YJ, Luan H, Brody T, Odenwald WF, Lee T.

Development. 2014 Jan;141(2):253-8. doi: 10.1242/dev.103069. Epub 2013 Dec 4. Erratum in: Development. 2014 Jan;141(2):488.

7.

Cis-regulatory complexity within a large non-coding region in the Drosophila genome.

Kundu M, Kuzin A, Lin TY, Lee CH, Brody T, Odenwald WF.

PLoS One. 2013 Apr 22;8(4):e60137. doi: 10.1371/journal.pone.0060137. Print 2013.

8.

Isolation and characterization of Staphylococcus aureus strains from a Paso del Norte dairy.

Matyi SA, Dupre JM, Johnson WL, Hoyt PR, White DG, Brody T, Odenwald WF, Gustafson JE.

J Dairy Sci. 2013 Jun;96(6):3535-42. doi: 10.3168/jds.2013-6590. Epub 2013 Apr 19.

9.

The cis-regulatory dynamics of the Drosophila CNS determinant castor are controlled by multiple sub-pattern enhancers.

Kuzin A, Kundu M, Ross J, Koizumi K, Brody T, Odenwald WF.

Gene Expr Patterns. 2012 Aug-Sep;12(7-8):261-72. doi: 10.1016/j.gep.2012.05.004. Epub 2012 Jun 9.

10.

Analysis of inland crude oil spill threats, vulnerabilities, and emergency response in the midwest United States.

Brody TM, Di Bianca P, Krysa J.

Risk Anal. 2012 Oct;32(10):1741-9. doi: 10.1111/j.1539-6924.2012.01813.x. Epub 2012 May 16.

PMID:
22591382
11.

Identification of cis-Regulatory Elements in the dmyc Gene of Drosophila Melanogaster.

Kharazmi J, Moshfegh C, Brody T.

Gene Regul Syst Bio. 2012;6:15-42. doi: 10.4137/GRSB.S8044. Epub 2011 Dec 21.

12.

Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers.

Brody T, Yavatkar AS, Kuzin A, Kundu M, Tyson LJ, Ross J, Lin TY, Lee CH, Awasaki T, Lee T, Odenwald WF.

Dev Dyn. 2012 Jan;241(1):169-89. doi: 10.1002/dvdy.22728. Epub 2011 Aug 30.

13.

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis.

Kumar S, Konikoff C, Van Emden B, Busick C, Davis KT, Ji S, Wu LW, Ramos H, Brody T, Panchanathan S, Ye J, Karr TL, Gerold K, McCutchan M, Newfeld SJ.

Bioinformatics. 2011 Dec 1;27(23):3319-20. doi: 10.1093/bioinformatics/btr567. Epub 2011 Oct 12.

14.

Functional analysis of conserved sequences within a temporally restricted neural precursor cell enhancer.

Kuzin A, Kundu M, Brody T, Odenwald WF.

Mech Dev. 2011 Mar-Apr;128(3-4):165-77. doi: 10.1016/j.mod.2011.02.001. Epub 2011 Feb 16.

15.

Self-selected or mandated, open access increases citation impact for higher quality research.

Gargouri Y, Hajjem C, Larivière V, Gingras Y, Carr L, Brody T, Harnad S.

PLoS One. 2010 Oct 18;5(10):e13636. doi: 10.1371/journal.pone.0013636.

16.

Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development.

Kuzin A, Kundu M, Ekatomatis A, Brody T, Odenwald WF.

Gene Expr Patterns. 2009 Feb;9(2):65-72. doi: 10.1016/j.gep.2008.10.005. Epub 2008 Nov 24.

17.

Horizontal gene transfers link a human MRSA pathogen to contagious bovine mastitis bacteria.

Brody T, Yavatkar AS, Lin Y, Ross J, Kuzin A, Kundu M, Fann Y, Odenwald WF.

PLoS One. 2008 Aug 27;3(8):e3074. doi: 10.1371/journal.pone.0003074.

18.

Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers.

Brody T, Rasband W, Baler K, Kuzin A, Kundu M, Odenwald WF.

BMC Genomics. 2008 Aug 1;9:371. doi: 10.1186/1471-2164-9-371.

19.

Databases and Web sites for neurogenetics.

Brody T, Odenwald W.

Curr Protoc Neurosci. 2004 Sep;Appendix 5:Appendix 5B. doi: 10.1002/0471142301.nsa05bs28.

PMID:
18428593
20.

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

BMC Genomics. 2008 Feb 28;9:106. doi: 10.1186/1471-2164-9-106.

21.
22.

Homeostatic mechanisms for iron storage revealed by genetic manipulations and live imaging of Drosophila ferritin.

Missirlis F, Kosmidis S, Brody T, Mavrakis M, Holmberg S, Odenwald WF, Skoulakis EM, Rouault TA.

Genetics. 2007 Sep;177(1):89-100. Epub 2007 Jul 1.

23.

cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.

Brody T, Rasband W, Baler K, Kuzin A, Kundu M, Odenwald WF.

Genome Biol. 2007;8(5):R75.

24.

Regulation of temporal identities during Drosophila neuroblast lineage development.

Brody T, Odenwald WF.

Curr Opin Cell Biol. 2005 Dec;17(6):672-5. Epub 2005 Oct 21. Review.

PMID:
16243502
25.

EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA.

Odenwald WF, Rasband W, Kuzin A, Brody T.

Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14700-5. Epub 2005 Oct 3.

26.

Nerfin-1 is required for early axon guidance decisions in the developing Drosophila CNS.

Kuzin A, Brody T, Moore AW, Odenwald WF.

Dev Biol. 2005 Jan 15;277(2):347-65.

27.

Cellular diversity in the developing nervous system: a temporal view from Drosophila.

Brody T, Odenwald WF.

Development. 2002 Aug;129(16):3763-70. Review.

28.
29.

A search for Drosophila neural precursor genes identifies ran.

Koizumi K, Stivers C, Brody T, Zangeneh S, Mozer B, Odenwald WF.

Dev Genes Evol. 2001 Feb;211(2):67-75.

PMID:
11455416
30.
31.
32.

Drosophila melanogaster G protein-coupled receptors.

Brody T, Cravchik A.

J Cell Biol. 2000 Jul 24;150(2):F83-8. Review. No abstract available.

33.

Comparative genomics of the eukaryotes.

Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH, Lewis S.

Science. 2000 Mar 24;287(5461):2204-15.

34.

The Interactive Fly: gene networks, development and the Internet.

Brody T.

Trends Genet. 1999 Aug;15(8):333-4. No abstract available.

PMID:
10431196
35.

Characterization of Alu repeats that are associated with trinucleotide and tetranucleotide repeat microsatellites.

Yandava CN, Gastier JM, Pulido JC, Brody T, Sheffield V, Murray J, Buetow K, Duyk GM.

Genome Res. 1997 Jul;7(7):716-24.

36.
37.

Identification of the murine beige gene by YAC complementation and positional cloning.

Perou CM, Moore KJ, Nagle DL, Misumi DJ, Woolf EA, McGrail SH, Holmgren L, Brody TH, Dussault BJ Jr, Monroe CA, Duyk GM, Pryor RJ, Li L, Justice MJ, Kaplan J.

Nat Genet. 1996 Jul;13(3):303-8.

PMID:
8673129
38.

Identification and characterization of the mouse obesity gene tubby: a member of a novel gene family.

Kleyn PW, Fan W, Kovats SG, Lee JJ, Pulido JC, Wu Y, Berkemeier LR, Misumi DJ, Holmgren L, Charlat O, Woolf EA, Tayber O, Brody T, Shu P, Hawkins F, Kennedy B, Baldini L, Ebeling C, Alperin GD, Deeds J, Lakey ND, Culpepper J, Chen H, Glücksmann-Kuis MA, Carlson GA, Duyk GM, Moore KJ.

Cell. 1996 Apr 19;85(2):281-90.

39.

Development of a screening set for new (CAG/CTG)n dynamic mutations.

Gastier JM, Brody T, Pulido JC, Businga T, Sunden S, Hu X, Maitra S, Buetow KH, Murray JC, Sheffield VC, Boguski M, Duyk GM, Hudson TJ.

Genomics. 1996 Feb 15;32(1):75-85.

PMID:
8786123
40.

Chromosomal assignment of 2900 tri- and tetranucleotide repeat markers using NIGMS somatic cell hybrid panel 2.

Sunden SL, Businga T, Beck J, McClain A, Gastier JM, Pulido JC, Yandava CN, Brody T, Ghazizadeh J, Weber JL, Duyk GM, Murray JC, Buetow KH, Sheffield VC.

Genomics. 1996 Feb 15;32(1):15-20.

PMID:
8786107
41.

Survey of trinucleotide repeats in the human genome: assessment of their utility as genetic markers.

Gastier JM, Pulido JC, Sunden S, Brody T, Buetow KH, Murray JC, Weber JL, Hudson TJ, Sheffield VC, Duyk GM.

Hum Mol Genet. 1995 Oct;4(10):1829-36.

PMID:
8595403
42.
43.

Correction of the DNA repair defect in xeroderma pigmentosum group E by injection of a DNA damage-binding protein.

Keeney S, Eker AP, Brody T, Vermeulen W, Bootsma D, Hoeijmakers JH, Linn S.

Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):4053-6.

44.

The fluoroquinolones.

Brody T, Pensak ML.

Am J Otol. 1991 Nov;12(6):477-9.

PMID:
1805646
45.

A committee report on vacant chairs of pharmacology.

Vesell ES, Mandel HG, Brody TM, Greenbaum LM, Roberts J, Standaert FG.

Acad Med. 1991 Feb;66(2):93. No abstract available.

PMID:
1993110
46.

Association of folic acid with rat liver microsomes.

Brody T, Stokstad EL.

Mol Cell Biochem. 1990 Sep 3;97(1):67-73.

PMID:
2174100
47.

Depressant effects of chloroquine on the isolated guinea-pig heart.

Tona L, Ng YC, Akera T, Brody TM.

Eur J Pharmacol. 1990 Mar 27;178(3):293-301.

PMID:
2340863
48.

Nitrous oxide provokes changes in folylpenta- and hexaglutamates.

Brody T, Stokstad EL.

J Nutr. 1990 Jan;120(1):71-80.

PMID:
2303913
49.

Isolation and enrichment of Ca2+-tolerant myocytes for biochemical experiments from guinea-pig heart.

Stemmer P, Akera T, Brody TM, Rardon DP, Watanabe AM.

Life Sci. 1989;44(17):1231-7.

PMID:
2541290

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