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Items: 32

1.

RbpA relaxes promoter selectivity of M. tuberculosis RNA polymerase.

Sudalaiyadum Perumal A, Vishwakarma RK, Hu Y, Morichaud Z, Brodolin K.

Nucleic Acids Res. 2018 Nov 2;46(19):10106-10118. doi: 10.1093/nar/gky714.

2.

Single-molecule analysis reveals the mechanism of transcription activation in M. tuberculosis.

Vishwakarma RK, Cao AM, Morichaud Z, Perumal AS, Margeat E, Brodolin K.

Sci Adv. 2018 May 23;4(5):eaao5498. doi: 10.1126/sciadv.aao5498. eCollection 2018 May.

3.

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria.

Dulin D, Bauer DLV, Malinen AM, Bakermans JJW, Kaller M, Morichaud Z, Petushkov I, Depken M, Brodolin K, Kulbachinskiy A, Kapanidis AN.

Nat Commun. 2018 Apr 16;9(1):1478. doi: 10.1038/s41467-018-03902-9.

4.

Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.

Duchi D, Gryte K, Robb NC, Morichaud Z, Sheppard C, Brodolin K, Wigneshweraraj S, Kapanidis AN.

Nucleic Acids Res. 2018 Jan 25;46(2):677-688. doi: 10.1093/nar/gkx1146.

5.

SOLEIL shining on the solution-state structure of biomacromolecules by synchrotron X-ray footprinting at the Metrology beamline.

Baud A, Aymé L, Gonnet F, Salard I, Gohon Y, Jolivet P, Brodolin K, Da Silva P, Giuliani A, Sclavi B, Chardot T, Mercère P, Roblin P, Daniel R.

J Synchrotron Radiat. 2017 May 1;24(Pt 3):576-585. doi: 10.1107/S1600577517002478. Epub 2017 Mar 24.

PMID:
28452748
6.

RNA Polymerase Pausing during Initial Transcription.

Duchi D, Bauer DL, Fernandez L, Evans G, Robb N, Hwang LC, Gryte K, Tomescu A, Zawadzki P, Morichaud Z, Brodolin K, Kapanidis AN.

Mol Cell. 2016 Sep 15;63(6):939-50. doi: 10.1016/j.molcel.2016.08.011. Epub 2016 Sep 8.

7.

Regions 1.2 and 3.2 of the RNA Polymerase σ Subunit Promote DNA Melting and Attenuate Action of the Antibiotic Lipiarmycin.

Morichaud Z, Chaloin L, Brodolin K.

J Mol Biol. 2016 Jan 29;428(2 Pt B):463-76. doi: 10.1016/j.jmb.2015.12.017. Epub 2015 Dec 24.

PMID:
26724534
8.

Mycobacterium RbpA cooperates with the stress-response σB subunit of RNA polymerase in promoter DNA unwinding.

Hu Y, Morichaud Z, Perumal AS, Roquet-Baneres F, Brodolin K.

Nucleic Acids Res. 2014;42(16):10399-408. doi: 10.1093/nar/gku742. Epub 2014 Aug 13.

9.

An innovative biologic recycling process of leukoreduction filters to produce active human antimicrobial peptides.

Vossier L, Leon F, Bachelier C, Marchandin H, Lehmann S, Leonetti JP, Brodolin K, Coste J, Fournier-Wirth C.

Transfusion. 2014 May;54(5):1332-9. doi: 10.1111/trf.12444. Epub 2013 Oct 10.

PMID:
24117506
10.

Mycobacterium tuberculosis RbpA protein is a new type of transcriptional activator that stabilizes the σ A-containing RNA polymerase holoenzyme.

Hu Y, Morichaud Z, Chen S, Leonetti JP, Brodolin K.

Nucleic Acids Res. 2012 Aug;40(14):6547-57. doi: 10.1093/nar/gks346. Epub 2012 May 8.

11.

Structural transitions in the transcription elongation complexes of bacterial RNA polymerase during σ-dependent pausing.

Zhilina E, Esyunina D, Brodolin K, Kulbachinskiy A.

Nucleic Acids Res. 2012 Apr;40(7):3078-91. doi: 10.1093/nar/gkr1158. Epub 2011 Dec 2.

12.

Characteristics of σ-dependent pausing by RNA polymerases from Escherichia coli and Thermus aquaticus.

Zhilina EV, Miropolskaya NA, Bass IA, Brodolin KL, Kulbachinskiy AV.

Biochemistry (Mosc). 2011 Oct;76(10):1098-106. doi: 10.1134/S0006297911100038.

13.
14.

The transcription inhibitor lipiarmycin blocks DNA fitting into the RNA polymerase catalytic site.

Tupin A, Gualtieri M, Leonetti JP, Brodolin K.

EMBO J. 2010 Aug 4;29(15):2527-37. doi: 10.1038/emboj.2010.135. Epub 2010 Jun 18.

15.

Resistance to rifampicin: at the crossroads between ecological, genomic and medical concerns.

Tupin A, Gualtieri M, Roquet-Banères F, Morichaud Z, Brodolin K, Leonetti JP.

Int J Antimicrob Agents. 2010 Jun;35(6):519-23. doi: 10.1016/j.ijantimicag.2009.12.017. Epub 2010 Feb 24. Review.

PMID:
20185278
16.

Frequency and characterisation of spontaneous lipiarmycin-resistant Enterococcus faecalis mutants selected in vitro.

Gualtieri M, Tupin A, Brodolin K, Leonetti JP.

Int J Antimicrob Agents. 2009 Dec;34(6):605-6. doi: 10.1016/j.ijantimicag.2009.07.003. Epub 2009 Aug 15. No abstract available.

PMID:
19683897
17.

Myxopyronin: a punch in the jaws of bacterial RNA polymerase.

Tupin A, Gualtieri M, Brodolin K, Leonetti JP.

Future Microbiol. 2009 Mar;4(2):145-9. doi: 10.2217/17460913.4.2.145.

PMID:
19257840
18.

In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences.

Stanojcic S, Lemaitre JM, Brodolin K, Danis E, Mechali M.

Mol Cell Biol. 2008 Sep;28(17):5265-74. doi: 10.1128/MCB.00181-08. Epub 2008 Jun 23.

19.

Region 1.2 of the RNA polymerase sigma subunit controls recognition of the -10 promoter element.

Zenkin N, Kulbachinskiy A, Yuzenkova Y, Mustaev A, Bass I, Severinov K, Brodolin K.

EMBO J. 2007 Feb 21;26(4):955-64. Epub 2007 Feb 1.

20.

HoxB domain induction silences DNA replication origins in the locus and specifies a single origin at its boundary.

Grégoire D, Brodolin K, Méchali M.

EMBO Rep. 2006 Aug;7(8):812-6. Epub 2006 Jul 14.

21.
22.
23.

Specification of a DNA replication origin by a transcription complex.

Danis E, Brodolin K, Menut S, Maiorano D, Girard-Reydet C, Méchali M.

Nat Cell Biol. 2004 Aug;6(8):721-30. Epub 2004 Jul 11.

PMID:
15247921
24.

The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription.

Brodolin K, Zenkin N, Mustaev A, Mamaeva D, Heumann H.

Nat Struct Mol Biol. 2004 Jun;11(6):551-7. Epub 2004 May 2.

PMID:
15122346
25.

[Mutations in beta'-subunit of the Escherichia coli RNA-polymerase influence interaction with downstream duplex DNA in the elongation complex].

Kul'bachinskiĭ AV, Ershova GV, Korzheva NV, Brodolin KL, Nikiforov VG.

Genetika. 2002 Oct;38(10):1422-7. Russian.

PMID:
12449654
27.

Topography of lacUV5 initiation complexes.

Studitsky V, Brodolin K, Liu Y, Mirzabekov A.

Nucleic Acids Res. 2001 Feb 1;29(3):854-61.

28.

Identification of RNA polymerase beta' subunit segment contacting the melted region of the lacUV5 promoter.

Brodolin K, Mustaev A, Severinov K, Nikiforov V.

J Biol Chem. 2000 Feb 4;275(5):3661-6.

29.

Conformational changes in E. coli RNA polymerase during promoter recognition.

Brodolin KL, Studitsky VM, Mirzabekov AD.

Nucleic Acids Res. 1993 Dec 11;21(24):5748-53.

30.
31.

Distribution of high mobility group proteins 1/2, E and 14/17 and linker histones H1 and H5 on transcribed and non-transcribed regions of chicken erythrocyte chromatin.

Postnikov YV, Shick VV, Belyavsky AV, Khrapko KR, Brodolin KL, Nikolskaya TA, Mirzabekov AD.

Nucleic Acids Res. 1991 Feb 25;19(4):717-25.

32.

[Chromosomal proteins in chick embryo erythrocytes on transcriptionally active and inactive genes].

Postnikov IuV, Shik VV, Beliavskiĭ AV, Brodolin KL, Khrapko KR, Nikol'skaia TA, Mirzabekov AD.

Mol Biol (Mosk). 1989 Nov-Dec;23(6):1682-91. Russian.

PMID:
2633039

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