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Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria.

Chase AB, Arevalo P, Brodie EL, Polz MF, Karaoz U, Martiny JBH.

MBio. 2019 Oct 29;10(5). pii: e02361-19. doi: 10.1128/mBio.02361-19.


Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change.

Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD.

ISME J. 2019 Sep 25. doi: 10.1038/s41396-019-0510-0. [Epub ahead of print] Review. No abstract available.


Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer.

Mailloux BJ, Kim C, Kichuk T, Nguyen K, Precht C, Wang S, Jewell TNM, Karaoz U, Brodie EL, Williams KH, Beller HR, Buchholz BA.

Sci Rep. 2019 Jul 17;9(1):10370. doi: 10.1038/s41598-019-46663-1.


BAFF, IL-4 and IL-21 separably program germinal center-like phenotype acquisition, BCL6 expression, proliferation and survival of CD40L-activated B cells in vitro.

Robinson MJ, Pitt C, Brodie EJ, Valk AM, O'Donnell K, Nitschke L, Jones S, Tarlinton DM.

Immunol Cell Biol. 2019 Oct;97(9):826-839. doi: 10.1111/imcb.12283. Epub 2019 Jul 29.


Evaluation of the mechanical compatibility of additively manufactured porous Ti-25Ta alloy for load-bearing implant applications.

Soro N, Attar H, Brodie E, Veidt M, Molotnikov A, Dargusch MS.

J Mech Behav Biomed Mater. 2019 Sep;97:149-158. doi: 10.1016/j.jmbbm.2019.05.019. Epub 2019 May 14.


Sex-Specific Selection and the Evolution of Between-Sex Genetic Covariance.

McGlothlin JW, Cox RM, Brodie ED.

J Hered. 2019 Jul 1;110(4):422-432. doi: 10.1093/jhered/esz031.


Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle.

Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA 3rd, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, Adkins JN, Pett-Ridge J, Brodie EL.

Nat Microbiol. 2019 May;4(5):864-875. doi: 10.1038/s41564-019-0384-y. Epub 2019 Mar 11.


Systematics of the frogs allocated to Sarcohyla bistincta sensu lato (Cope, 1877), with description of a new species from Western Mexico.

Campbell JA, Brodie EDJ, Caviedes-Solis IW, De Oca AN, Luja VH, Flores-Villela O, GarcÍa-vÁzquez UO, Sarker GC, Wostl E, Smith EN.

Zootaxa. 2018 May 24;4422(3):366-384. doi: 10.11646/zootaxa.4422.3.3.


Large-effect mutations generate trade-off between predatory and locomotor ability during arms race coevolution with deadly prey.

Hague MTJ, Toledo G, Geffeney SL, Hanifin CT, Brodie ED Jr, Brodie ED 3rd.

Evol Lett. 2018 Jul 31;2(4):406-416. doi: 10.1002/evl3.76. eCollection 2018 Aug.


Adaptive radiation along a deeply conserved genetic line of least resistance in Anolis lizards.

McGlothlin JW, Kobiela ME, Wright HV, Mahler DL, Kolbe JJ, Losos JB, Brodie ED 3rd.

Evol Lett. 2018 Jul 17;2(4):310-322. doi: 10.1002/evl3.72. eCollection 2018 Aug.


An Investigation into Tetrodotoxin (TTX) Levels Associated with the Red Dorsal Spots in Eastern Newt (Notophthalmus viridescens) Efts and Adults.

Spicer MM, Stokes AN, Chapman TL, Brodie ED Jr, Brodie ED 3rd, Gall BG.

J Toxicol. 2018 Sep 2;2018:9196865. doi: 10.1155/2018/9196865. eCollection 2018.


Perrault syndrome type 3 caused by diverse molecular defects in CLPP.

Brodie EJ, Zhan H, Saiyed T, Truscott KN, Dougan DA.

Sci Rep. 2018 Aug 27;8(1):12862. doi: 10.1038/s41598-018-30311-1.


Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome.

Perry BW, Card DC, McGlothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Hoffmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, Whiteley G, Reyes-Velasco J, Mackessy SP, Gamble T, Storey KB, Biggar KK, Passow CN, Kuo CH, McGaugh SE, Bronikowski AM, de Koning APJ, Edwards SV, Pfrender ME, Minx P, Brodie ED 3rd, Brodie ED Jr, Warren WC, Castoe TA.

Genome Biol Evol. 2018 Aug 1;10(8):2110-2129. doi: 10.1093/gbe/evy157.


The indestructible insect: Velvet ants from across the United States avoid predation by representatives from all major tetrapod clades.

Gall BG, Spivey KL, Chapman TL, Delph RJ, Brodie ED Jr, Wilson JS.

Ecol Evol. 2018 May 18;8(11):5852-5862. doi: 10.1002/ece3.4123. eCollection 2018 Jun.


Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants.

Wood LF, Brown BP, Lennard K, Karaoz U, Havyarimana E, Passmore JS, Hesseling AC, Edlefsen PT, Kuhn L, Mulder N, Brodie EL, Sodora DL, Jaspan HB.

Clin Infect Dis. 2018 Sep 28;67(8):1237-1246. doi: 10.1093/cid/ciy265.


Constraints Imposed by a Natural Landscape Override Offspring Fitness Effects to Shape Oviposition Decisions in Wild Forked Fungus Beetles.

Wood CW, Wice EW, Del Sol J, Paul S, Sanderson BJ, Brodie ED 3rd.

Am Nat. 2018 Apr;191(4):524-538. doi: 10.1086/696218. Epub 2018 Feb 7.


Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL.

Nat Microbiol. 2018 Apr;3(4):470-480. doi: 10.1038/s41564-018-0129-3. Epub 2018 Mar 19.


Lyn, Lupus, and (B) Lymphocytes, a Lesson on the Critical Balance of Kinase Signaling in Immunity.

Brodie EJ, Infantino S, Low MSY, Tarlinton DM.

Front Immunol. 2018 Mar 1;9:401. doi: 10.3389/fimmu.2018.00401. eCollection 2018. Review.


Large Blooms of Bacillales (Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity.

Karaoz U, Couradeau E, da Rocha UN, Lim HC, Northen T, Garcia-Pichel F, Brodie EL.

MBio. 2018 Mar 6;9(2). pii: e01366-16. doi: 10.1128/mBio.01366-16.


Skin gland concentrations adapted to different evolutionary pressures in the head and posterior regions of the caecilian Siphonops annulatus.

Jared C, Mailho-Fontana PL, Marques-Porto R, Sciani JM, Pimenta DC, Brodie ED Jr, Antoniazzi MM.

Sci Rep. 2018 Feb 23;8(1):3576. doi: 10.1038/s41598-018-22005-5.


Facultative pupal mating in Heliconius erato: Implications for mate choice, female preference, and speciation.

Thurman TJ, Brodie E, Evans E, McMillan WO.

Ecol Evol. 2018 Jan 13;8(3):1882-1889. doi: 10.1002/ece3.3624. eCollection 2018 Feb.


Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J.

Stand Genomic Sci. 2017 Nov 15;12:67. doi: 10.1186/s40793-017-0279-6. eCollection 2017.


Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits.

Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny JBH.

MBio. 2017 Nov 14;8(6). pii: e01809-17. doi: 10.1128/mBio.01809-17.


Is there more than one way to skin a newt? Convergent toxin resistance in snakes is not due to a common genetic mechanism.

Feldman CR, Durso AM, Hanifin CT, Pfrender ME, Ducey PK, Stokes AN, Barnett KE, Brodie ED 3rd, Brodie ED Jr.

Heredity (Edinb). 2017 Dec;119(6):468. doi: 10.1038/hdy.2017.39. Epub 2017 Aug 9.


Structural cutaneous adaptations for defense in toad (Rhinella icterica) parotoid macroglands.

Regis-Alves E, Jared SGS, Maurício B, Mailho-Fontana PL, Antoniazzi MM, Fleury-Curado MC, Brodie ED Jr, Jared C.

Toxicon. 2017 Oct;137:128-134. doi: 10.1016/j.toxicon.2017.07.022. Epub 2017 Jul 29.


Interacting stressors and the potential for adaptation in a changing world: responses of populations and individuals.

Hopkins GR, French SS, Brodie ED Jr.

R Soc Open Sci. 2017 Jun 21;4(6):161057. doi: 10.1098/rsos.161057. eCollection 2017 Jun.


Probabilistic Invasion Underlies Natural Gut Microbiome Stability.

Obadia B, Güvener ZT, Zhang V, Ceja-Navarro JA, Brodie EL, Ja WW, Ludington WB.

Curr Biol. 2017 Jul 10;27(13):1999-2006.e8. doi: 10.1016/j.cub.2017.05.034. Epub 2017 Jun 15.


To stress or not to stress: Physiological responses to tetrodotoxin in resistant gartersnakes vary by sex.

Neuman-Lee LA, Brodie ED Jr, Hansen T, Brodie ED 3rd, French SS.

Comp Biochem Physiol A Mol Integr Physiol. 2017 Jul;209:34-40. doi: 10.1016/j.cbpa.2015.11.017. Epub 2017 Apr 2.


Convergent adaptation to dangerous prey proceeds through the same first-step mutation in the garter snake Thamnophis sirtalis.

Hague MTJ, Feldman CR, Brodie ED Jr, Brodie ED 3rd.

Evolution. 2017 Jun;71(6):1504-1518. doi: 10.1111/evo.13244. Epub 2017 Apr 21.


Reoxidation of Chromium(III) Products Formed under Different Biogeochemical Regimes.

Varadharajan C, Beller HR, Bill M, Brodie EL, Conrad ME, Han R, Irwin C, Larsen JT, Lim HC, Molins S, Steefel CI, van Hise A, Yang L, Nico PS.

Environ Sci Technol. 2017 May 2;51(9):4918-4927. doi: 10.1021/acs.est.6b06044. Epub 2017 Apr 18.


Corticosteroid responses of snakes to toxins from toads (bufadienolides) and plants (cardenolides) reflect differences in dietary specializations.

Mohammadi S, French SS, Neuman-Lee LA, Durham SL, Kojima Y, Mori A, Brodie ED Jr, Savitzky AH.

Gen Comp Endocrinol. 2017 Jun 1;247:16-25. doi: 10.1016/j.ygcen.2017.03.015. Epub 2017 Mar 24.


Parotoid, radial, and tibial macroglands of the frog Odontophrynus cultripes: Differences and similarities with toads.

Mailho-Fontana PL, Antoniazzi MM, Rodrigues I, Sciani JM, Pimenta DC, Brodie ED Jr, Rodrigues MT, Jared C.

Toxicon. 2017 Apr;129:123-133. doi: 10.1016/j.toxicon.2017.02.022. Epub 2017 Feb 21.


Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain.

Yabusaki SB, Wilkins MJ, Fang Y, Williams KH, Arora B, Bargar J, Beller HR, Bouskill NJ, Brodie EL, Christensen JN, Conrad ME, Danczak RE, King E, Soltanian MR, Spycher NF, Steefel CI, Tokunaga TK, Versteeg R, Waichler SR, Wainwright HM.

Environ Sci Technol. 2017 Mar 21;51(6):3307-3317. doi: 10.1021/acs.est.6b04873. Epub 2017 Mar 7.


Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer.

Jewell TN, Karaoz U, Bill M, Chakraborty R, Brodie EL, Williams KH, Beller HR.

Front Microbiol. 2017 Jan 25;8:40. doi: 10.3389/fmicb.2017.00040. eCollection 2017.


Effect of Different Lignocellulosic Diets on Bacterial Microbiota and Hydrolytic Enzyme Activities in the Gut of the Cotton Boll Weevil (Anthonomus grandis).

Ben Guerrero E, Soria M, Salvador R, Ceja-Navarro JA, Campos E, Brodie EL, Talia P.

Front Microbiol. 2016 Dec 27;7:2093. doi: 10.3389/fmicb.2016.02093. eCollection 2016.


Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.


Microbial legacies alter decomposition in response to simulated global change.

Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD.

ISME J. 2017 Feb;11(2):490-499. doi: 10.1038/ismej.2016.122. Epub 2016 Oct 14.


Convergent Evolution of Tetrodotoxin-Resistant Sodium Channels in Predators and Prey.

Toledo G, Hanifin C, Geffeney S, Brodie ED 3rd.

Curr Top Membr. 2016;78:87-113. doi: 10.1016/bs.ctm.2016.07.006. Epub 2016 Aug 9. Review.


Evolutionary response when selection and genetic variation covary across environments.

Wood CW, Brodie ED 3rd.

Ecol Lett. 2016 Oct;19(10):1189-200. doi: 10.1111/ele.12662. Epub 2016 Aug 17.


Detrimental Effects of Zinc Oxide Nanoparticles on Amphibian Life Stages.

Spence AR, Hopkins GR, Neuman-Lee LA, Smith GD, Brodie ED Jr, French SS.

J Exp Zool A Ecol Genet Physiol. 2016 Aug;325(7):415-24. doi: 10.1002/jez.2026. Epub 2016 Jul 25.


Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass.

Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK.

Ecology. 2016 May;97(5):1307-18.


Physiological Responses to Salinity Vary with Proximity to the Ocean in a Coastal Amphibian.

Hopkins GR, Brodie ED Jr, Neuman-Lee LA, Mohammadi S, Brusch GA 4th, Hopkins ZM, French SS.

Physiol Biochem Zool. 2016 Jul-Aug;89(4):322-30. doi: 10.1086/687292. Epub 2016 Jun 2.


Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance.

McGlothlin JW, Kobiela ME, Feldman CR, Castoe TA, Geffeney SL, Hanifin CT, Toledo G, Vonk FJ, Richardson MK, Brodie ED Jr, Pfrender ME, Brodie ED 3rd.

Curr Biol. 2016 Jun 20;26(12):1616-1621. doi: 10.1016/j.cub.2016.04.056. Epub 2016 Jun 9.


Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.

Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie EL.

MBio. 2016 May 13;7(3). pii: e00714-16. doi: 10.1128/mBio.00714-16.


Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism.

Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL.

Front Microbiol. 2016 Apr 20;7:525. doi: 10.3389/fmicb.2016.00525. eCollection 2016.


Comparing the Natural and Anthropogenic Sodium Channel Blockers Tetrodotoxin and Indoxacarb in Garter Snakes.

Neuman-Lee LA, Brodie ED Jr, Hansen T, Brodie ED 3rd, French SS.

J Exp Zool A Ecol Genet Physiol. 2016 Apr;325(4):255-64. doi: 10.1002/jez.2012. Epub 2016 Apr 14.


Toxicity and population structure of the Rough-Skinned Newt (Taricha granulosa) outside the range of an arms race with resistant predators.

Hague MT, Avila LA, Hanifin CT, Snedden WA, Stokes AN, Brodie ED Jr, Brodie ED 3rd.

Ecol Evol. 2016 Mar 17;6(9):2714-24. doi: 10.1002/ece3.2068. eCollection 2016 May.


Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition.

Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie EL.

Front Microbiol. 2016 Mar 15;7:323. doi: 10.3389/fmicb.2016.00323. eCollection 2016.


Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer.

Jewell TN, Karaoz U, Brodie EL, Williams KH, Beller HR.

ISME J. 2016 Sep;10(9):2106-17. doi: 10.1038/ismej.2016.25. Epub 2016 Mar 4.


Mutations to the cardiotonic steroid binding site of Na(+)/K(+)-ATPase are associated with high level of resistance to gamabufotalin in a natricine snake.

Mohammadi S, Brodie ED Jr, Neuman-Lee LA, Savitzky AH.

Toxicon. 2016 May;114:13-5. doi: 10.1016/j.toxicon.2016.02.019. Epub 2016 Feb 21.


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