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Items: 1 to 50 of 183

1.

Molecular characterization of tumors meeting diagnostic criteria for the non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP).

Pool C, Walter V, Bann D, Goldenberg D, Broach J, Hennessy M, Cottrill E, Washburn E, Williams N, Crist H, Imamura Y, Warrick JI.

Virchows Arch. 2019 Mar;474(3):341-351. doi: 10.1007/s00428-018-02512-6. Epub 2019 Jan 15.

PMID:
30645670
2.

Genetically Modified Labeling Policies: Moving Forward or Backward?

Borges BJP, Arantes OMN, Fernandes AAR, Broach JR, Fernandes PMB.

Front Bioeng Biotechnol. 2018 Nov 27;6:181. doi: 10.3389/fbioe.2018.00181. eCollection 2018. Review.

3.

CD4 T cells control development and maintenance of brain-resident CD8 T cells during polyomavirus infection.

Mockus TE, Shwetank, Lauver MD, Ren HM, Netherby CS, Salameh T, Kawasawa YI, Yue F, Broach JR, Lukacher AE.

PLoS Pathog. 2018 Oct 29;14(10):e1007365. doi: 10.1371/journal.ppat.1007365. eCollection 2018 Oct.

4.

Integrative detection and analysis of structural variation in cancer genomes.

Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F.

Nat Genet. 2018 Oct;50(10):1388-1398. doi: 10.1038/s41588-018-0195-8. Epub 2018 Sep 10.

5.

Intuitive versus Algorithmic Triage.

Hart A, Nammour E, Mangolds V, Broach J.

Prehosp Disaster Med. 2018 Aug;33(4):355-361. doi: 10.1017/S1049023X18000626.

PMID:
30129913
6.

Unexpected similarities between C9ORF72 and sporadic forms of ALS/FTD suggest a common disease mechanism.

Conlon EG, Fagegaltier D, Agius P, Davis-Porada J, Gregory J, Hubbard I, Kang K, Kim D; New York Genome Center ALS Consortium, Phatnani H, Kwan J, Sareen D, Broach JR, Simmons Z, Arcila-Londono X, Lee EB, Van Deerlin VM, Shneider NA, Fraenkel E, Ostrow LW, Baas F, Zaitlen N, Berry JD, Malaspina A, Fratta P, Cox GA, Thompson LM, Finkbeiner S, Dardiotis E, Miller TM, Chandran S, Pal S, Hornstein E, MacGowan DJ, Heiman-Patterson T, Hammell MG, Patsopoulos NA, Dubnau J, Nath A, Phatnani H, Shneider NA, Manley JL.

Elife. 2018 Jul 13;7. pii: e37754. doi: 10.7554/eLife.37754.

7.

Code Help: Can This Unique State Regulatory Intervention Improve Emergency Department Crowding?

Michael SS, Broach JP, Kotkowski KA, Brush DE, Volturo GA, Reznek MA.

West J Emerg Med. 2018 May;19(3):501-509. doi: 10.5811/westjem.2018.1.36641. Epub 2018 Mar 8.

8.

Identification and drawing of early concepts in children with autism spectrum disorder and children without disability.

McCarthy JW, Benigno JP, Broach J, Boster JB, Wright BM.

Augment Altern Commun. 2018 Jun;34(2):155-165. doi: 10.1080/07434618.2018.1457716. Epub 2018 Apr 16.

PMID:
29661042
9.

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.

Nicolas A, Kenna KP, Renton AE, Ticozzi N, Faghri F, Chia R, Dominov JA, Kenna BJ, Nalls MA, Keagle P, Rivera AM, van Rheenen W, Murphy NA, van Vugt JJFA, Geiger JT, Van der Spek RA, Pliner HA, Shankaracharya, Smith BN, Marangi G, Topp SD, Abramzon Y, Gkazi AS, Eicher JD, Kenna A; ITALSGEN Consortium, Mora G, Calvo A, Mazzini L, Riva N, Mandrioli J, Caponnetto C, Battistini S, Volanti P, La Bella V, Conforti FL, Borghero G, Messina S, Simone IL, Trojsi F, Salvi F, Logullo FO, D'Alfonso S, Corrado L, Capasso M, Ferrucci L; Genomic Translation for ALS Care (GTAC) Consortium, Moreno CAM, Kamalakaran S, Goldstein DB; ALS Sequencing Consortium, Gitler AD, Harris T, Myers RM; NYGC ALS Consortium, Phatnani H, Musunuri RL, Evani US, Abhyankar A, Zody MC; Answer ALS Foundation, Kaye J, Finkbeiner S, Wyman SK, LeNail A, Lima L, Fraenkel E, Svendsen CN, Thompson LM, Van Eyk JE, Berry JD, Miller TM, Kolb SJ, Cudkowicz M, Baxi E; Clinical Research in ALS and Related Disorders for Therapeutic Development (CReATe) Consortium, Benatar M, Taylor JP, Rampersaud E, Wu G, Wuu J; SLAGEN Consortium, Lauria G, Verde F, Fogh I, Tiloca C, Comi GP, Sorarù G, Cereda C; French ALS Consortium, Corcia P, Laaksovirta H, Myllykangas L, Jansson L, Valori M, Ealing J, Hamdalla H, Rollinson S, Pickering-Brown S, Orrell RW, Sidle KC, Malaspina A, Hardy J, Singleton AB, Johnson JO, Arepalli S, Sapp PC, McKenna-Yasek D, Polak M, Asress S, Al-Sarraj S, King A, Troakes C, Vance C, de Belleroche J, Baas F, Ten Asbroek ALMA, Muñoz-Blanco JL, Hernandez DG, Ding J, Gibbs JR, Scholz SW, Floeter MK, Campbell RH, Landi F, Bowser R, Pulst SM, Ravits JM, MacGowan DJL, Kirby J, Pioro EP, Pamphlett R, Broach J, Gerhard G, Dunckley TL, Brady CB, Kowall NW, Troncoso JC, Le Ber I, Mouzat K, Lumbroso S, Heiman-Patterson TD, Kamel F, Van Den Bosch L, Baloh RH, Strom TM, Meitinger T, Shatunov A, Van Eijk KR, de Carvalho M, Kooyman M, Middelkoop B, Moisse M, McLaughlin RL, Van Es MA, Weber M, Boylan KB, Van Blitterswijk M, Rademakers R, Morrison KE, Basak AN, Mora JS, Drory VE, Shaw PJ, Turner MR, Talbot K, Hardiman O, Williams KL, Fifita JA, Nicholson GA, Blair IP, Rouleau GA, Esteban-Pérez J, García-Redondo A, Al-Chalabi A; Project MinE ALS Sequencing Consortium, Rogaeva E, Zinman L, Ostrow LW, Maragakis NJ, Rothstein JD, Simmons Z, Cooper-Knock J, Brice A, Goutman SA, Feldman EL, Gibson SB, Taroni F, Ratti A, Gellera C, Van Damme P, Robberecht W, Fratta P, Sabatelli M, Lunetta C, Ludolph AC, Andersen PM, Weishaupt JH, Camu W, Trojanowski JQ, Van Deerlin VM, Brown RH Jr, van den Berg LH, Veldink JH, Harms MB, Glass JD, Stone DJ, Tienari P, Silani V, Chiò A, Shaw CE, Traynor BJ, Landers JE.

Neuron. 2018 Mar 21;97(6):1268-1283.e6. doi: 10.1016/j.neuron.2018.02.027.

10.

A Possible Role for Platelet-Activating Factor Receptor in Amyotrophic Lateral Sclerosis Treatment.

Briones MRS, Snyder AM, Ferreira RC, Neely EB, Connor JR, Broach JR.

Front Neurol. 2018 Feb 6;9:39. doi: 10.3389/fneur.2018.00039. eCollection 2018.

11.

Acceptability and perceived utility of drone technology among emergency medical service responders and incident commanders for mass casualty incident management.

Hart A, Chai PR, Griswold MK, Lai JT, Boyer EW, Broach J.

Am J Disaster Med. 2017 Fall;12(4):261-265. doi: 10.5055/ajdm.2017.0279.

PMID:
29468628
12.

Usability and Reliability of Smart Glasses for Secondary Triage During Mass Casualty Incidents.

Broach J, Hart A, Griswold M, Lai J, Boyer EW, Skolnik AB, Chai PR.

Proc Annu Hawaii Int Conf Syst Sci. 2018 Jan 3;2018:1416-1422.

13.
14.

Pitfalls of exome sequencing: a case study of the attribution of HABP2 rs7080536 in familial non-medullary thyroid cancer.

Gerhard GS, Bann DV, Broach J, Goldenberg D.

NPJ Genom Med. 2017;2. pii: 8. doi: 10.1038/s41525-017-0011-x. Epub 2017 Mar 28.

15.

Phosphorylation and nuclear transit modulate the balance between normal function and terminal aggregation of the yeast RNA-binding protein Ssd1.

Kurischko C, Broach JR.

Mol Biol Cell. 2017 Nov 1;28(22):3057-3069. doi: 10.1091/mbc.E17-02-0100. Epub 2017 Sep 6.

16.

Expansion of C9ORF72 in amyotrophic lateral sclerosis correlates with brain-computer interface performance.

Geronimo A, Sheldon KE, Broach JR, Simmons Z, Schiff SJ.

Sci Rep. 2017 Aug 21;7(1):8875. doi: 10.1038/s41598-017-08857-3.

17.

Protracted volitional spawning of pinfish Lagodon rhomboides and changes in egg quality and fatty-acid composition throughout the spawning season.

Broach JS, Ohs CL, Breen NE.

J Fish Biol. 2017 Sep;91(3):806-817. doi: 10.1111/jfb.13381. Epub 2017 Jul 26.

PMID:
28744874
18.

Clonal evolution in paired endometrial intraepithelial neoplasia/atypical hyperplasia and endometrioid adenocarcinoma.

Russo M, Broach J, Sheldon K, Houser KR, Liu DJ, Kesterson J, Phaeton R, Hossler C, Hempel N, Baker M, Newell JM, Zaino R, Warrick JI.

Hum Pathol. 2017 Sep;67:69-77. doi: 10.1016/j.humpath.2017.07.003. Epub 2017 Jul 14.

PMID:
28712776
19.

Identification of a rare LAMB4 variant associated with familial diverticulitis through exome sequencing.

Coble JL, Sheldon KE, Yue F, Salameh TJ, Harris LR III, Deiling S, Ruggiero FM, Eshelman MA, Yochum GS, Koltun WA, Gerhard GS, Broach JR.

Hum Mol Genet. 2017 Aug 15;26(16):3212-3220. doi: 10.1093/hmg/ddx204.

20.

Mediator binds to boundaries of chromosomal interaction domains and to proteins involved in DNA looping, RNA metabolism, chromatin remodeling, and actin assembly.

Chereji RV, Bharatula V, Elfving N, Blomberg J, Larsson M, Morozov AV, Broach JR, Björklund S.

Nucleic Acids Res. 2017 Sep 6;45(15):8806-8821. doi: 10.1093/nar/gkx491.

21.

Altered molecular profile in thyroid cancers from patients affected by the Three Mile Island nuclear accident.

Goldenberg D, Russo M, Houser K, Crist H, Derr JB, Walter V, Warrick JI, Sheldon KE, Broach J, Bann DV.

Laryngoscope. 2017 Jul;127 Suppl 3:S1-S9. doi: 10.1002/lary.26687. Epub 2017 May 29.

PMID:
28555940
22.

Use of Facial Recognition Software to Identify Disaster Victims With Facial Injuries.

Broach J, Yong R, Manuell ME, Nichols C.

Disaster Med Public Health Prep. 2017 Oct;11(5):568-572. doi: 10.1017/dmp.2016.207. Epub 2017 Apr 10.

PMID:
28393744
23.

High-Amplitude Atlantic Hurricanes Produce Disparate Mortality in Small, Low-Income Countries.

Dresser C, Allison J, Broach J, Smith ME, Milsten A.

Disaster Med Public Health Prep. 2016 Dec;10(6):832-837. doi: 10.1017/dmp.2016.62. Epub 2016 Aug 30.

PMID:
27572097
24.

Separating Putative Pathogens from Background Contamination with Principal Orthogonal Decomposition: Evidence for Leptospira in the Ugandan Neonatal Septisome.

Schiff SJ, Kiwanuka J, Riggio G, Nguyen L, Mu K, Sproul E, Bazira J, Mwanga-Amumpaire J, Tumusiime D, Nyesigire E, Lwanga N, Bogale KT, Kapur V, Broach JR, Morton SU, Warf BC, Poss M.

Front Med (Lausanne). 2016 Jun 13;3:22. doi: 10.3389/fmed.2016.00022. eCollection 2016.

25.

What is This Rash?

Gleeson TP, Griswold MK, Broach J, Babu KM.

J Med Toxicol. 2016 Jun;12(2):199-200. doi: 10.1007/s13181-015-0526-4. No abstract available.

26.

The yeast genome undergoes significant topological reorganization in quiescence.

Rutledge MT, Russo M, Belton JM, Dekker J, Broach JR.

Nucleic Acids Res. 2015 Sep 30;43(17):8299-313. doi: 10.1093/nar/gkv723. Epub 2015 Jul 21.

27.

Regional preparedness for mass acetylcholinesterase inhibitor poisoning through plans for stockpiling and interhospital sharing of pralidoxime.

Broach J, Krupa R, Bird SB, Manuell ME.

Am J Disaster Med. 2014 Fall;9(4):237-45. doi: 10.5055/ajdm.2014.0176.

PMID:
25672327
28.

Bicycle boulevards and changes in physical activity and active transportation: findings from a natural experiment.

Dill J, McNeil N, Broach J, Ma L.

Prev Med. 2014 Dec;69 Suppl 1:S74-8. doi: 10.1016/j.ypmed.2014.10.006. Epub 2014 Oct 16.

PMID:
25456802
29.

A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress.

Elfving N, Chereji RV, Bharatula V, Björklund S, Morozov AV, Broach JR.

Nucleic Acids Res. 2014 May;42(9):5468-82. doi: 10.1093/nar/gku176. Epub 2014 Mar 5.

30.

Genetic heterogeneity of amyotrophic lateral sclerosis: implications for clinical practice and research.

Su XW, Broach JR, Connor JR, Gerhard GS, Simmons Z.

Muscle Nerve. 2014 Jun;49(6):786-803. doi: 10.1002/mus.24198. Epub 2014 Apr 8. Review.

PMID:
24488689
31.

The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress.

Shor E, Fox CA, Broach JR.

PLoS Genet. 2013;9(8):e1003680. doi: 10.1371/journal.pgen.1003680. Epub 2013 Aug 1.

32.

Nucleotide degradation and ribose salvage in yeast.

Xu YF, Létisse F, Absalan F, Lu W, Kuznetsova E, Brown G, Caudy AA, Yakunin AF, Broach JR, Rabinowitz JD.

Mol Syst Biol. 2013 May 14;9:665. doi: 10.1038/msb.2013.21.

33.

Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses.

Petrenko N, Chereji RV, McClean MN, Morozov AV, Broach JR.

Mol Biol Cell. 2013 Jun;24(12):2045-57. doi: 10.1091/mbc.E12-12-0870. Epub 2013 Apr 24.

34.

High hydrostatic pressure activates transcription factors involved in Saccharomyces cerevisiae stress tolerance.

Bravim F, da Silva LF, Souza DT, Lippman SI, Broach JR, Fernandes AA, Fernandes PM.

Curr Pharm Biotechnol. 2012 Dec;13(15):2712-20.

35.

Nutritional control of growth and development in yeast.

Broach JR.

Genetics. 2012 Sep;192(1):73-105. doi: 10.1534/genetics.111.135731. Review.

36.

High hydrostatic pressure activates gene expression that leads to ethanol production enhancement in a Saccharomyces cerevisiae distillery strain.

Bravim F, Lippman SI, da Silva LF, Souza DT, Fernandes AA, Masuda CA, Broach JR, Fernandes PM.

Appl Microbiol Biotechnol. 2013 Mar;97(5):2093-107. doi: 10.1007/s00253-012-4356-x. Epub 2012 Aug 23.

37.

Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation.

Xu YF, Zhao X, Glass DS, Absalan F, Perlman DH, Broach JR, Rabinowitz JD.

Mol Cell. 2012 Oct 12;48(1):52-62. doi: 10.1016/j.molcel.2012.07.013. Epub 2012 Aug 16.

38.

Decoding complex chemical mixtures with a physical model of a sensor array.

Tsitron J, Ault AD, Broach JR, Morozov AV.

PLoS Comput Biol. 2011 Oct;7(10):e1002224. doi: 10.1371/journal.pcbi.1002224. Epub 2011 Oct 20.

39.

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.

Tolkunov D, Zawadzki KA, Singer C, Elfving N, Morozov AV, Broach JR.

Mol Biol Cell. 2011 Jun 15;22(12):2106-18. doi: 10.1091/mbc.E10-10-0826. Epub 2011 Apr 20.

40.

Yeast cells can access distinct quiescent states.

Klosinska MM, Crutchfield CA, Bradley PH, Rabinowitz JD, Broach JR.

Genes Dev. 2011 Feb 15;25(4):336-49. doi: 10.1101/gad.2011311. Epub 2011 Feb 2.

41.

Ambulatory care by disaster responders in the tent camps of Port-au-Prince, Haiti, January 2010.

Broach JP, McNamara M, Harrison K.

Disaster Med Public Health Prep. 2010 Jun;4(2):116-21.

PMID:
20526133
42.

Initiation of the TORC1-regulated G0 program requires Igo1/2, which license specific mRNAs to evade degradation via the 5'-3' mRNA decay pathway.

Talarek N, Cameroni E, Jaquenoud M, Luo X, Bontron S, Lippman S, Devgan G, Snyder M, Broach JR, De Virgilio C.

Mol Cell. 2010 May 14;38(3):345-55. doi: 10.1016/j.molcel.2010.02.039.

43.

Disaster medicine and emergency preparedness training for health care institutions.

Broach J, Manuell ME, Milsten A.

Virtual Mentor. 2010 Sep 1;12(9):714-6. doi: 10.1001/virtualmentor.2010.12.9.medu1-1009. No abstract available.

44.

The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication.

Shor E, Warren CL, Tietjen J, Hou Z, Müller U, Alborelli I, Gohard FH, Yemm AI, Borisov L, Broach JR, Weinreich M, Nieduszynski CA, Ansari AZ, Fox CA.

PLoS Genet. 2009 Dec;5(12):e1000755. doi: 10.1371/journal.pgen.1000755. Epub 2009 Dec 4.

45.

Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6.

Lippman SI, Broach JR.

Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19928-33. doi: 10.1073/pnas.0907027106. Epub 2009 Nov 9.

46.
47.

Expression of CXCR4, a G-protein-coupled receptor for CXCL12 in yeast identification of new-generation inverse agonists.

Evans BJ, Wang Z, Broach JR, Oishi S, Fujii N, Peiper SC.

Methods Enzymol. 2009;460:399-412. doi: 10.1016/S0076-6879(09)05220-3.

PMID:
19446737
48.

Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions.

Freckleton G, Lippman SI, Broach JR, Tavazoie S.

PLoS Genet. 2009 Apr;5(4):e1000449. doi: 10.1371/journal.pgen.1000449. Epub 2009 Apr 10.

49.

Glucose regulates transcription in yeast through a network of signaling pathways.

Zaman S, Lippman SI, Schneper L, Slonim N, Broach JR.

Mol Syst Biol. 2009;5:245. doi: 10.1038/msb.2009.2. Epub 2009 Feb 17. Erratum in: Mol Syst Biol. 2009;5:257.

50.

Predicting cellular growth from gene expression signatures.

Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, Troyanskaya OG.

PLoS Comput Biol. 2009 Jan;5(1):e1000257. doi: 10.1371/journal.pcbi.1000257. Epub 2009 Jan 2.

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