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Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Merla C, Rodrigues C, Passet V, Corbella M, Thorpe HA, Kallonen TVS, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil EJ, Brisse S.

Front Microbiol. 2019 Oct 25;10:2360. doi: 10.3389/fmicb.2019.02360. eCollection 2019.


Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae.

Comandatore F, Sassera D, Bayliss SC, Scaltriti E, Gaiarsa S, Cao X, Gales AC, Saito R, Pongolini S, Brisse S, Feil EJ, Bandi C.

Genome Biol Evol. 2019 Nov 1;11(11):3240-3251. doi: 10.1093/gbe/evz236.


Erratum to "Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov." [Res Microbiol 170 (3) (2019) 165-170].

Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S.

Res Microbiol. 2019 Sep - Oct;170(6-7):300. doi: 10.1016/j.resmic.2019.09.001. Epub 2019 Oct 5. No abstract available.


Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization.

Savin C, Criscuolo A, Guglielmini J, Le Guern AS, Carniel E, Pizarro-Cerdá J, Brisse S.

Microb Genom. 2019 Oct;5(10). doi: 10.1099/mgen.0.000301. Epub 2019 Sep 30.


Improved quadruplex real-time PCR assay for the diagnosis of diphtheria.

Badell E, Guillot S, Tulliez M, Pascal M, Panunzi LG, Rose S, Litt D, Fry NK, Brisse S.

J Med Microbiol. 2019 Oct;68(10):1455-1465. doi: 10.1099/jmm.0.001070. Epub 2019 Sep 3.


Author Correction: Hypervirulent Listeria monocytogenes clones' adaptation to mammalian gut accounts for their association with dairy products.

Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M.

Nat Commun. 2019 Aug 6;10(1):3619. doi: 10.1038/s41467-019-11625-8.


The speciation and hybridization history of the genus Salmonella.

Criscuolo A, Issenhuth-Jeanjean S, Didelot X, Thorell K, Hale J, Parkhill J, Thomson NR, Weill FX, Falush D, Brisse S.

Microb Genom. 2019 Aug;5(8). doi: 10.1099/mgen.0.000284. Epub 2019 Jul 26.


Genome characteristics of Bordetella pertussis isolates from Tunisia.

Ben Fraj I, Bouchez V, Smaoui H, Kechrid A, Brisse S.

J Med Microbiol. 2019 Sep;68(9):1320-1323. doi: 10.1099/jmm.0.001042.


Detection of OXA-48-like-producing Enterobacterales in Irish recreational water.

Mahon BM, Brehony C, Cahill N, McGrath E, O'Connor L, Varley A, Cormican M, Ryan S, Hickey P, Keane S, Mulligan M, Ruane B, Jolley KA, Maiden MC, Brisse S, Morris D.

Sci Total Environ. 2019 Nov 10;690:1-6. doi: 10.1016/j.scitotenv.2019.06.480. Epub 2019 Jun 30.


An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase.

Brehony C, McGrath E, Brennan W, Tuohy A, Whyte T, Brisse S, Maiden M, Jolley K, Morris D, Cormican M.

J Antimicrob Chemother. 2019 Jul 1;74(7):1856-1862. doi: 10.1093/jac/dkz136.


Hypervirulent Listeria monocytogenes clones' adaption to mammalian gut accounts for their association with dairy products.

Maury MM, Bracq-Dieye H, Huang L, Vales G, Lavina M, Thouvenot P, Disson O, Leclercq A, Brisse S, Lecuit M.

Nat Commun. 2019 Jun 6;10(1):2488. doi: 10.1038/s41467-019-10380-0. Erratum in: Nat Commun. 2019 Aug 6;10(1):3619.


Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes.

Gaiarsa S, Batisti Biffignandi G, Esposito EP, Castelli M, Jolley KA, Brisse S, Sassera D, Zarrilli R.

Front Microbiol. 2019 May 3;10:930. doi: 10.3389/fmicb.2019.00930. eCollection 2019.


New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae.

Thiry D, Passet V, Danis-Wlodarczyk K, Lood C, Wagemans J, De Sordi L, van Noort V, Dufour N, Debarbieux L, Mainil JG, Brisse S, Lavigne R.

Viruses. 2019 May 3;11(5). pii: E411. doi: 10.3390/v11050411.


Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance.

Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M.

PLoS Negl Trop Dis. 2019 Apr 26;13(4):e0007374. doi: 10.1371/journal.pntd.0007374. eCollection 2019 Apr.


Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics.

Toubiana J, Azarnoush S, Bouchez V, Landier A, Guillot S, Matczak S, Bonacorsi S, Brisse S.

Open Forum Infect Dis. 2019 Mar 7;6(4):ofz122. doi: 10.1093/ofid/ofz122. eCollection 2019 Apr.


Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales?

Cahill N, O'Connor L, Mahon B, Varley Á, McGrath E, Ryan P, Cormican M, Brehony C, Jolley KA, Maiden MC, Brisse S, Morris D.

Sci Total Environ. 2019 Jul 1;672:618-624. doi: 10.1016/j.scitotenv.2019.03.428. Epub 2019 Apr 3.


Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Rodrigues C, Passet V, Rakotondrasoa A, Diallo TA, Criscuolo A, Brisse S.

Res Microbiol. 2019 Apr - May;170(3):165-170. doi: 10.1016/j.resmic.2019.02.003. Epub 2019 Feb 25. Erratum in: Res Microbiol. 2019 Sep - Oct;170(6-7):300.


Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis.

Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S.

J Clin Microbiol. 2019 Apr 26;57(5). pii: e00042-19. doi: 10.1128/JCM.00042-19. Print 2019 May.


LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.

Painset A, Björkman JT, Kiil K, Guillier L, Mariet JF, Félix B, Amar C, Rotariu O, Roussel S, Perez-Reche F, Brisse S, Moura A, Lecuit M, Forbes K, Strachan N, Grant K, Møller-Nielsen E, Dallman TJ.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000257. Epub 2019 Feb 18.


Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.

Lepuschitz S, Schill S, Stoeger A, Pekard-Amenitsch S, Huhulescu S, Inreiter N, Hartl R, Kerschner H, Sorschag S, Springer B, Brisse S, Allerberger F, Mach RL, Ruppitsch W.

Sci Total Environ. 2019 Apr 20;662:227-235. doi: 10.1016/j.scitotenv.2019.01.179. Epub 2019 Jan 20.


Re-emergence of Corynebacterium diphtheriae.

Scheifer C, Rolland-Debord C, Badell E, Reibel F, Aubry A, Perignon A, Patey O, Brisse S, Caumes E.

Med Mal Infect. 2019 Sep;49(6):463-466. doi: 10.1016/j.medmal.2018.12.001. Epub 2018 Dec 21.


Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry.

Rodrigues C, Passet V, Rakotondrasoa A, Brisse S.

Front Microbiol. 2018 Dec 7;9:3000. doi: 10.3389/fmicb.2018.03000. eCollection 2018.


Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing.

Bouchez V, Baines SL, Guillot S, Brisse S.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01207-18. doi: 10.1128/MRA.01207-18. eCollection 2018 Nov.


Pertussis epidemiology in Tunisian infants and children and characterization of Bordetella pertussis isolates: results of a 9-year surveillance study, 2007 to 2016.

Ben Fraj I, Kechrid A, Guillot S, Bouchez V, Brisse S, Guiso N, Smaoui H.

J Med Microbiol. 2019 Feb;68(2):241-247. doi: 10.1099/jmm.0.000892. Epub 2018 Dec 10.


Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.

Lam MMC, Wyres KL, Judd LM, Wick RR, Jenney A, Brisse S, Holt KE.

Genome Med. 2018 Oct 29;10(1):77. doi: 10.1186/s13073-018-0587-5.


Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov.

Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S.

Int J Syst Evol Microbiol. 2018 Dec;68(12):3826-3831. doi: 10.1099/ijsem.0.003069. Epub 2018 Oct 24.


Rare Elizabethkingia anophelis meningitis case in a Danish male.

Nielsen HL, Tarpgaard IH, Fuglsang-Damgaard D, Thomsen PK, Brisse S, Dalager-Pedersen M.

JMM Case Rep. 2018 Aug 9;5(8):e005163. doi: 10.1099/jmmcr.0.005163. eCollection 2018 Aug.


Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.

Lam MMC, Wyres KL, Duchêne S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE.

Nat Commun. 2018 Jul 13;9(1):2703. doi: 10.1038/s41467-018-05114-7.


Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations.

Lam MMC, Wick RR, Wyres KL, Gorrie CL, Judd LM, Jenney AWJ, Brisse S, Holt KE.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000196. Epub 2018 Jul 9.


Genomic Sequencing of Bordetella pertussis for Epidemiology and Global Surveillance of Whooping Cough.

Bouchez V, Guglielmini J, Dazas M, Landier A, Toubiana J, Guillot S, Criscuolo A, Brisse S.

Emerg Infect Dis. 2018 Jun;24(6):988-994. doi: 10.3201/eid2406.171464.


Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.

Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A.

mBio. 2018 Apr 24;9(2). pii: e00573-18. doi: 10.1128/mBio.00573-18.


Rhinoscleroma pathogenesis: The type K3 capsule of Klebsiella rhinoscleromatis is a virulence factor not involved in Mikulicz cells formation.

Corelli B, Almeida AS, Sonego F, Castiglia V, Fevre C, Brisse S, Sansonetti PJ, Tournebize R.

PLoS Negl Trop Dis. 2018 Jan 30;12(1):e0006201. doi: 10.1371/journal.pntd.0006201. eCollection 2018 Jan.


Description of Klebsiella grimontii sp. nov.

Passet V, Brisse S.

Int J Syst Evol Microbiol. 2018 Jan;68(1):377-381. doi: 10.1099/ijsem.0.002517. Epub 2017 Dec 5.


Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014.

Samuelsen Ø, Overballe-Petersen S, Bjørnholt JV, Brisse S, Doumith M, Woodford N, Hopkins KL, Aasnæs B, Haldorsen B, Sundsfjord A; Norwegian Study Group on CPE.

PLoS One. 2017 Nov 15;12(11):e0187832. doi: 10.1371/journal.pone.0187832. eCollection 2017.


Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s.

Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V.

BMC Genomics. 2017 Nov 13;18(1):873. doi: 10.1186/s12864-017-4276-3.


Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter.

Garcia-Garcera M, Touchon M, Brisse S, Rocha EPC.

Environ Microbiol. 2017 Dec;19(12):5010-5024. doi: 10.1111/1462-2920.13949. Epub 2017 Dec 1.


Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR.

Antonie Van Leeuwenhoek. 2018 Jan;111(1):55-72. doi: 10.1007/s10482-017-0926-3. Epub 2017 Aug 30.


Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.

Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3192-3197. doi: 10.1099/ijsem.0.002065. Epub 2017 Aug 25.


Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone.

Villa L, Feudi C, Fortini D, Brisse S, Passet V, Bonura C, Endimiani A, Mammina C, Ocampo AM, Jimenez JN, Doumith M, Woodford N, Hopkins K, Carattoli A.

Microb Genom. 2017 Apr 26;3(4):e000110. doi: 10.1099/mgen.0.000110. eCollection 2017 Apr.


In-vivo loss of carbapenem resistance by extensively drug-resistant Klebsiella pneumoniae during treatment via porin expression modification.

Bialek-Davenet S, Mayer N, Vergalli J, Duprilot M, Brisse S, Pagès JM, Nicolas-Chanoine MH.

Sci Rep. 2017 Jul 27;7(1):6722. doi: 10.1038/s41598-017-06503-6.


Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts.

Saffarian A, Touchon M, Mulet C, Tournebize R, Passet V, Brisse S, Rocha EPC, Sansonetti PJ, Pédron T.

BMC Genomics. 2017 Jul 11;18(1):525. doi: 10.1186/s12864-017-3925-x.


Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France.

Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M.

Emerg Infect Dis. 2017 Sep;23(9):1462-1470. doi: 10.3201/eid2309.170336. Epub 2017 Sep 17. Erratum in: Emerg Infect Dis. 2017 Nov;23(11):1937.


Erratum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.

Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EPC, Brisse S, Lecuit M.

Nat Genet. 2017 May 26;49(6):970. doi: 10.1038/ng0617-970d. No abstract available.


Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S.

Nat Commun. 2017 May 24;8:15483. doi: 10.1038/ncomms15483.


Diagnosis in France of a Non-Toxigenic tox Gene-Bearing Strain of Corynebacterium diphtheriae in a Young Male Back From Senegal.

Billard-Pomares T, Rouyer C, Walewski V, Badell-Ocando E, Dumas M, Zumelzu C, Jaureguy F, Brisse S, Caux F, Bouchaud O, Carbonnelle E.

Open Forum Infect Dis. 2017 Jan 9;4(1):ofw271. doi: 10.1093/ofid/ofw271. eCollection 2017 Winter.


Corrigendum: Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity.

Maury MM, Tsai YH, Charlier C, Touchon M, Chenal-Francisque V, Leclercq A, Criscuolo A, Gaultier C, Roussel S, Brisabois A, Disson O, Rocha EP, Brisse S, Lecuit M.

Nat Genet. 2017 Mar 30;49(4):651. doi: 10.1038/ng0417-651b. No abstract available.


Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae.

Blin C, Passet V, Touchon M, Rocha EPC, Brisse S.

Environ Microbiol. 2017 May;19(5):1881-1898. doi: 10.1111/1462-2920.13689. Epub 2017 Mar 3.


Community-acquired meningitis caused by a CG86 hypervirulent Klebsiella pneumoniae strain: first case report in the Caribbean.

Melot B, Brisse S, Breurec S, Passet V, Malpote E, Lamaury I, Thiery G, Hoen B.

BMC Infect Dis. 2016 Dec 7;16(1):736.


Citrobacter europaeus sp. nov., isolated from water and human faecal samples.

Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S.

Int J Syst Evol Microbiol. 2017 Jan;67(1):170-173. doi: 10.1099/ijsem.0.001606. Epub 2017 Feb 20.


1926-2016: 90 Years of listeriology.

Lebreton A, Stavru F, Brisse S, Cossart P.

Microbes Infect. 2016 Dec;18(12):711-723. doi: 10.1016/j.micinf.2016.10.009. Epub 2016 Nov 19.

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