Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 19

1.

Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica.

Paape T, Briskine RV, Halstead-Nussloch G, Lischer HEL, Shimizu-Inatsugi R, Hatakeyama M, Tanaka K, Nishiyama T, Sabirov R, Sese J, Shimizu KK.

Nat Commun. 2018 Sep 25;9(1):3909. doi: 10.1038/s41467-018-06108-1.

2.

Positional bias in variant calls against draft reference assemblies.

Briskine RV, Shimizu KK.

BMC Genomics. 2017 Mar 28;18(1):263. doi: 10.1186/s12864-017-3637-2.

3.

Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, X Mayer KF, Mott R, Tsiantis M.

Nat Plants. 2016 Nov 7;2:16189. doi: 10.1038/nplants.2016.189. No abstract available.

PMID:
27819656
4.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ.

BMC Genomics. 2016 Nov 4;17(1):875.

5.

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, Mayer KF, Mott R, Tsiantis M.

Nat Plants. 2016 Oct 31;2(11):16167. doi: 10.1038/nplants.2016.167. Erratum in: Nat Plants. 2016 Nov 07;2:16189.

PMID:
27797353
6.

Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology.

Briskine RV, Paape T, Shimizu-Inatsugi R, Nishiyama T, Akama S, Sese J, Shimizu KK.

Mol Ecol Resour. 2017 Sep;17(5):1025-1036. doi: 10.1111/1755-0998.12604. Epub 2016 Oct 26.

PMID:
27671113
7.

Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser.

Schaefer RJ, Briskine R, Springer NM, Myers CL.

PLoS One. 2014 Jun 12;9(6):e99193. doi: 10.1371/journal.pone.0099193. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0120222.

8.

Genomic signature of adaptation to climate in Medicago truncatula.

Yoder JB, Stanton-Geddes J, Zhou P, Briskine R, Young ND, Tiffin P.

Genetics. 2014 Apr;196(4):1263-75. doi: 10.1534/genetics.113.159319. Epub 2014 Jan 17.

9.

High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches.

Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C.

New Phytol. 2014 Mar;201(4):1328-42. doi: 10.1111/nph.12611. Epub 2013 Nov 28.

10.

Epigenetic and genetic influences on DNA methylation variation in maize populations.

Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM.

Plant Cell. 2013 Aug;25(8):2783-97. doi: 10.1105/tpc.113.114793. Epub 2013 Aug 6.

11.

Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula.

Paape T, Bataillon T, Zhou P, J Y Kono T, Briskine R, Young ND, Tiffin P.

Mol Ecol. 2013 Jul;22(13):3525-38. doi: 10.1111/mec.12329. Epub 2013 Jun 15.

PMID:
23773281
12.

Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula.

Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Yakub M, Sugawara M, Sadowsky MJ, Young ND, Tiffin P.

PLoS One. 2013 May 31;8(5):e65688. doi: 10.1371/journal.pone.0065688. Print 2013.

13.

Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays.

Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM.

PLoS One. 2013 Apr 23;8(4):e61005. doi: 10.1371/journal.pone.0061005. Print 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/0444d495-9231-4097-abe0-4750b9045971.

14.

Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27.

Makarevitch I, Eichten SR, Briskine R, Waters AJ, Danilevskaya ON, Meeley RB, Myers CL, Vaughn MW, Springer NM.

Plant Cell. 2013 Mar;25(3):780-93. doi: 10.1105/tpc.112.106427. Epub 2013 Mar 5.

15.

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

Yoder JB, Briskine R, Mudge J, Farmer A, Paape T, Steele K, Weiblen GD, Bharti AK, Zhou P, May GD, Young ND, Tiffin P.

Syst Biol. 2013 May 1;62(3):424-38. doi: 10.1093/sysbio/syt009. Epub 2013 Feb 15.

PMID:
23417680
16.

Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae.

Epstein B, Branca A, Mudge J, Bharti AK, Briskine R, Farmer AD, Sugawara M, Young ND, Sadowsky MJ, Tiffin P.

PLoS Genet. 2012;8(8):e1002868. doi: 10.1371/journal.pgen.1002868. Epub 2012 Aug 2.

17.

Reshaping of the maize transcriptome by domestication.

Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11878-83. doi: 10.1073/pnas.1201961109. Epub 2012 Jul 2.

18.

Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome.

Paape T, Zhou P, Branca A, Briskine R, Young N, Tiffin P.

Genome Biol Evol. 2012;4(5):726-37. doi: 10.1093/gbe/evs046. Epub 2012 May 3.

19.

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula.

Branca A, Paape TD, Zhou P, Briskine R, Farmer AD, Mudge J, Bharti AK, Woodward JE, May GD, Gentzbittel L, Ben C, Denny R, Sadowsky MJ, Ronfort J, Bataillon T, Young ND, Tiffin P.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E864-70. doi: 10.1073/pnas.1104032108. Epub 2011 Sep 26.

Supplemental Content

Loading ...
Support Center