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Items: 23

1.

NMR-assisted protein structure prediction with MELDxMD.

Robertson JC, Nassar R, Liu C, Brini E, Dill KA, Perez A.

Proteins. 2019 Jul 26. doi: 10.1002/prot.25788. [Epub ahead of print]

PMID:
31350773
2.

Predicting Protein Dimer Structures Using MELD × MD.

Brini E, Kozakov D, Dill KA.

J Chem Theory Comput. 2019 May 14;15(5):3381-3389. doi: 10.1021/acs.jctc.8b01208. Epub 2019 Apr 5.

PMID:
30908034
3.

Author Correction: Transcriptional dysregulation of Interferome in experimental and human Multiple Sclerosis.

Srinivasan S, Severa M, Rizzo F, Menon R, Brini E, Mechelli R, Martinelli V, Hertzog P, Salvetti M, Furlan R, Martino G, Comi G, Coccia EM, Farina C.

Sci Rep. 2018 May 11;8(1):7615. doi: 10.1038/s41598-018-24987-8.

4.

How Water's Properties Are Encoded in Its Molecular Structure and Energies.

Brini E, Fennell CJ, Fernandez-Serra M, Hribar-Lee B, Lukšič M, Dill KA.

Chem Rev. 2017 Oct 11;117(19):12385-12414. doi: 10.1021/acs.chemrev.7b00259. Epub 2017 Sep 26.

5.

Transcriptional dysregulation of Interferome in experimental and human Multiple Sclerosis.

Srinivasan S, Severa M, Rizzo F, Menon R, Brini E, Mechelli R, Martinelli V, Hertzog P, Salvetti M, Furlan R, Martino G, Comi G, Coccia EM, Farina C.

Sci Rep. 2017 Aug 21;7(1):8981. doi: 10.1038/s41598-017-09286-y. Erratum in: Sci Rep. 2018 May 11;8(1):7615.

6.

Dysregulation of MS risk genes and pathways at distinct stages of disease.

Srinivasan S, Di Dario M, Russo A, Menon R, Brini E, Romeo M, Sangalli F, Costa GD, Rodegher M, Radaelli M, Moiola L, Cantarella D, Medico E, Martino G, Furlan R, Martinelli V, Comi G, Farina C.

Neurol Neuroimmunol Neuroinflamm. 2017 Mar 16;4(3):e337. doi: 10.1212/NXI.0000000000000337. eCollection 2017 May.

7.

Blind protein structure prediction using accelerated free-energy simulations.

Perez A, Morrone JA, Brini E, MacCallum JL, Dill KA.

Sci Adv. 2016 Nov 11;2(11):e1601274. eCollection 2016 Nov.

8.

Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the SAMPL5 molecules.

Brini E, Paranahewage SS, Fennell CJ, Dill KA.

J Comput Aided Mol Des. 2016 Nov;30(11):1067-1077. doi: 10.1007/s10822-016-9961-9. Epub 2016 Sep 8.

9.

Grid-based backbone correction to the ff12SB protein force field for implicit-solvent simulations.

Perez A, MacCallum JL, Brini E, Simmerling C, Dill KA.

J Chem Theory Comput. 2015 Oct 13;11(10):4770-9. doi: 10.1021/acs.jctc.5b00662. Epub 2015 Sep 17.

10.

In-depth characterization of breast cancer tumor-promoting cell transcriptome by RNA sequencing and microarrays.

Callari M, Guffanti A, Soldà G, Merlino G, Fina E, Brini E, Moles A, Cappelletti V, Daidone MG.

Oncotarget. 2016 Jan 5;7(1):976-94. doi: 10.18632/oncotarget.5810.

11.

Impact of different ChIP-Seq protocols on DNA integrity and quality of bioinformatics analysis results.

Felsani A, Gudmundsson B, Nanni S, Brini E, Moles A, Thormar HG, Estibeiro P, Gaetano C, Capogrossi M, Farsetti A, Jonsson JJ, Guffanti A.

Brief Funct Genomics. 2015 Mar;14(2):156-62. doi: 10.1093/bfgp/elu001. Epub 2014 Feb 21.

PMID:
24562761
12.

Characterization of the genome of the dairy Lactobacillus helveticus bacteriophage {Phi}AQ113.

Zago M, Scaltriti E, Rossetti L, Guffanti A, Armiento A, Fornasari ME, Grolli S, Carminati D, Brini E, Pavan P, Felsani A, D'Urzo A, Moles A, Claude JB, Grandori R, Ramoni R, Giraffa G.

Appl Environ Microbiol. 2013 Aug;79(15):4712-8. doi: 10.1128/AEM.00620-13. Epub 2013 May 31.

13.

Chemically transferable coarse-grained potentials from conditional reversible work calculations.

Brini E, van der Vegt NF.

J Chem Phys. 2012 Oct 21;137(15):154113. doi: 10.1063/1.4758936.

PMID:
23083154
14.

Thermodynamic transferability of coarse-grained potentials for polymer-additive systems.

Brini E, Herbers CR, Deichmann G, van der Vegt NF.

Phys Chem Chem Phys. 2012 Sep 14;14(34):11896-903. doi: 10.1039/c2cp40735c. Epub 2012 Jun 22.

PMID:
22722404
15.

Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs.

Voellenkle C, Rooij Jv, Guffanti A, Brini E, Fasanaro P, Isaia E, Croft L, David M, Capogrossi MC, Moles A, Felsani A, Martelli F.

RNA. 2012 Mar;18(3):472-84. doi: 10.1261/rna.027615.111. Epub 2012 Jan 26.

16.

Conditional reversible work method for molecular coarse graining applications.

Brini E, Marcon V, van der Vegt NF.

Phys Chem Chem Phys. 2011 Jun 14;13(22):10468-74. doi: 10.1039/c0cp02888f. Epub 2011 May 3.

PMID:
21541381
17.

Regeneration and repair in multiple sclerosis: the role of cell transplantation.

Pluchino S, Zanotti L, Brini E, Ferrari S, Martino G.

Neurosci Lett. 2009 Jun 12;456(3):101-6. doi: 10.1016/j.neulet.2008.03.097. Epub 2009 Jan 17. Review.

PMID:
19429143
18.

Administration of a monomeric CCL2 variant to EAE mice inhibits inflammatory cell recruitment and protects from demyelination and axonal loss.

Brini E, Ruffini F, Bergami A, Brambilla E, Dati G, Greco B, Cirillo R, Proudfoot AE, Comi G, Furlan R, Zaratin P, Martino G.

J Neuroimmunol. 2009 Apr 30;209(1-2):33-9. doi: 10.1016/j.jneuroim.2009.01.022. Epub 2009 Feb 15.

PMID:
19232440
19.

Motor evoked potentials in a mouse model of chronic multiple sclerosis.

Amadio S, Pluchino S, Brini E, Morana P, Guerriero R, Martinelli Boneschi F, Comi G, Zaratin P, Muzio V, del Carro U.

Muscle Nerve. 2006 Feb;33(2):265-73.

PMID:
16307439
20.

Use of the galactose-based contrast agent SHU 508A (Levovist) in renal ultrasonography of the dog.

Pietra M, Brini E, Fracassi F, Diana A, Cipone M.

Vet Res Commun. 2005 Aug;29 Suppl 2:305-7. No abstract available.

PMID:
16244981
21.

Cerebellar cortical degeneration in three English bulldogs: clinical and neuropathological findings.

Gandini G, Botteron C, Brini E, Fatzer R, Diana A, Jaggy A.

J Small Anim Pract. 2005 Jun;46(6):291-4.

PMID:
15971900
22.

Necrosis of hippocampus and piriform lobe: clinical and neuropathological findings in two Italian cats.

Brini E, Gandini G, Crescio I, Fatzer R, Casalone C.

J Feline Med Surg. 2004 Dec;6(6):377-81.

PMID:
15546770
23.

Clinical and clinicopathologic findings in three dogs with steroid-responsive meningitis-arteritis (SRMA).

Gandini G, Brini E, Bellotti D, Cipone M.

Vet Res Commun. 2003 Sep;27 Suppl 1:763-5. No abstract available.

PMID:
14535516

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