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Items: 1 to 50 of 72

1.

Methylotrophs and Methylotroph Populations for Chloromethane Degradation.

Bringel F, Besaury L, Amato P, Kröber E, Kolb S, Keppler F, Vuilleumier S, Nadalig T.

Curr Issues Mol Biol. 2019 Jun 5;33:149-172. doi: 10.21775/cimb.033.149. [Epub ahead of print]

PMID:
31166190
2.

Methanol consumption drives the bacterial chloromethane sink in a forest soil.

Chaignaud P, Morawe M, Besaury L, Kröber E, Vuilleumier S, Bringel F, Kolb S.

ISME J. 2018 Nov;12(11):2681-2693. doi: 10.1038/s41396-018-0228-4. Epub 2018 Jul 10.

3.

Chloromethane formation and degradation in the fern phyllosphere.

Jaeger N, Besaury L, Röhling AN, Koch F, Delort AM, Gasc C, Greule M, Kolb S, Nadalig T, Peyret P, Vuilleumier S, Amato P, Bringel F, Keppler F.

Sci Total Environ. 2018 Sep 1;634:1278-1287. doi: 10.1016/j.scitotenv.2018.03.316. Epub 2018 Apr 18.

PMID:
29660879
4.

Chloromethane Degradation in Soils: A Combined Microbial and Two-Dimensional Stable Isotope Approach.

Jaeger N, Besaury L, Kröber E, Delort AM, Greule M, Lenhart K, Nadalig T, Vuilleumier S, Amato P, Kolb S, Bringel F, Keppler F.

J Environ Qual. 2018 Mar;47(2):254-262. doi: 10.2134/jeq2017.09.0358.

PMID:
29634809
5.

N-terminome and proteogenomic analysis of the Methylobacterium extorquens DM4 reference strain for dichloromethane utilization.

Bibi-Triki S, Husson G, Maucourt B, Vuilleumier S, Carapito C, Bringel F.

J Proteomics. 2018 May 15;179:131-139. doi: 10.1016/j.jprot.2018.03.012. Epub 2018 Mar 19.

PMID:
29567292
6.

Plant-Pesticide Interactions and the Global Chloromethane Budget.

Bringel F, Couée I.

Trends Plant Sci. 2018 Feb;23(2):95-99. doi: 10.1016/j.tplants.2017.12.001. Epub 2017 Dec 26.

PMID:
29287770
7.

Correlated production and consumption of chloromethane in the Arabidopsis thaliana phyllosphere.

Farhan Ul Haque M, Besaury L, Nadalig T, Bringel F, Mutterer J, Schaller H, Vuilleumier S.

Sci Rep. 2017 Dec 14;7(1):17589. doi: 10.1038/s41598-017-17421-y.

8.

Metabolic Regulation: A Master Role for Ribulose-1,5-Bisphosphate in One-Carbon Assimilation.

Bringel F, Vuilleumier S.

Curr Biol. 2017 Oct 23;27(20):R1127-R1129. doi: 10.1016/j.cub.2017.09.003.

9.

Genomic and Transcriptomic Analysis of Growth-Supporting Dehalogenation of Chlorinated Methanes in Methylobacterium.

Chaignaud P, Maucourt B, Weiman M, Alberti A, Kolb S, Cruveiller S, Vuilleumier S, Bringel F.

Front Microbiol. 2017 Sep 1;8:1600. doi: 10.3389/fmicb.2017.01600. eCollection 2017.

10.

Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Frindte K, Kalyuzhnaya MG, Bringel F, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Svenning MM, Trotsenko YA, Vuilleumier S, Woyke T, Knief C.

Genome Announc. 2017 Aug 17;5(33). pii: e00526-17. doi: 10.1128/genomeA.00526-17.

11.

Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21.

Bringel F, Postema CP, Mangenot S, Bibi-Triki S, Chaignaud P, Farhan Ul Haque M, Gruffaz C, Hermon L, Louhichi Y, Maucourt B, Muller EEL, Nadalig T, Lajus A, Rouy Z, Médigue C, Barbe V, Janssen DB, Vuilleumier S.

Genome Announc. 2017 Jul 27;5(30). pii: e00622-17. doi: 10.1128/genomeA.00622-17.

12.

Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment.

Bradley AS, Swanson PK, Muller EE, Bringel F, Caroll SM, Pearson A, Vuilleumier S, Marx CJ.

PLoS One. 2017 Mar 20;12(3):e0173323. doi: 10.1371/journal.pone.0173323. eCollection 2017.

13.

Diversity of Vaginal Lactic Acid Bacterial Microbiota in 15 Algerian Pregnant Women with and without Bacterial Vaginosis by using Culture Independent Method.

Alioua S, Abdi A, Fhoula I, Bringel F, Boudabous A, Ouzari IH.

J Clin Diagn Res. 2016 Sep;10(9):DC23-DC27. Epub 2016 Sep 1.

14.

Transfer of a Catabolic Pathway for Chloromethane in Methylobacterium Strains Highlights Different Limitations for Growth with Chloromethane or with Dichloromethane.

Michener JK, Vuilleumier S, Bringel F, Marx CJ.

Front Microbiol. 2016 Jul 19;7:1116. doi: 10.3389/fmicb.2016.01116. eCollection 2016.

15.

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Svenning MM, Stein LY, Kyrpides N, Shapiro N, Woyke T, Bringel F, Vuilleumier S, DiSpirito AA, Kalyuzhnaya MG.

Genome Announc. 2016 Jan 21;4(1). pii: e01629-15. doi: 10.1128/genomeA.01629-15.

16.

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF.

Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.

17.

Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics.

Bringel F, Couée I.

Front Microbiol. 2015 May 22;6:486. doi: 10.3389/fmicb.2015.00486. eCollection 2015. Review.

18.

Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.

19.

Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer.

Penny C, Gruffaz C, Nadalig T, Cauchie HM, Vuilleumier S, Bringel F.

Microorganisms. 2015 Jul 2;3(3):327-43. doi: 10.3390/microorganisms3030327.

20.

Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement.

Michener JK, Camargo Neves AA, Vuilleumier S, Bringel F, Marx CJ.

Elife. 2014 Nov 24;3. doi: 10.7554/eLife.04279.

21.

Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation.

Nadalig T, Greule M, Bringel F, Keppler F, Vuilleumier S.

Front Microbiol. 2014 Oct 15;5:523. doi: 10.3389/fmicb.2014.00523. eCollection 2014.

22.

Screening of lactic acid bacteria for their potential as microbial cell factories for bioconversion of lignocellulosic feedstocks.

Boguta AM, Bringel F, Martinussen J, Jensen PR.

Microb Cell Fact. 2014 Jul 5;13(1):97. doi: 10.1186/s12934-014-0097-0.

23.

Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains.

Michener JK, Vuilleumier S, Bringel F, Marx CJ.

J Bacteriol. 2014 Jun;196(11):2101-7. doi: 10.1128/JB.00034-14. Epub 2014 Mar 28.

24.

Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine.

Gruffaz C, Muller EE, Louhichi-Jelail Y, Nelli YR, Guichard G, Bringel F.

Appl Environ Microbiol. 2014 Jun;80(11):3541-50. doi: 10.1128/AEM.04160-13. Epub 2014 Mar 28.

25.

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium.

Kalyuzhnaya MG, Yang S, Rozova ON, Smalley NE, Clubb J, Lamb A, Gowda GA, Raftery D, Fu Y, Bringel F, Vuilleumier S, Beck DA, Trotsenko YA, Khmelenina VN, Lidstrom ME.

Nat Commun. 2013;4:2785. doi: 10.1038/ncomms3785.

PMID:
24302011
26.

Hydrogen and carbon isotope fractionation during degradation of chloromethane by methylotrophic bacteria.

Nadalig T, Greule M, Bringel F, Vuilleumier S, Keppler F.

Microbiologyopen. 2013 Dec;2(6):893-900. doi: 10.1002/mbo3.124. Epub 2013 Sep 8.

27.

Fluorescence-based bacterial bioreporter for specific detection of methyl halide emissions in the environment.

Farhan Ul Haque M, Nadalig T, Bringel F, Schaller H, Vuilleumier S.

Appl Environ Microbiol. 2013 Nov;79(21):6561-7. doi: 10.1128/AEM.01738-13. Epub 2013 Aug 16.

28.

Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.

Khmelenina VN, Beck DA, Munk C, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Scholz M, Teshima H, Xu Y, Chain P, Bringel F, Vuilleumier S, Dispirito A, Dunfield P, Jetten MS, Klotz MG, Knief C, Murrell JC, Op den Camp HJ, Sakai Y, Semrau J, Svenning M, Stein LY, Trotsenko YA, Kalyuzhnaya MG.

Genome Announc. 2013 Jun 27;1(4). pii: e00053-13. doi: 10.1128/genomeA.00053-13.

30.

Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.

Kits KD, Kalyuzhnaya MG, Klotz MG, Jetten MS, Op den Camp HJ, Vuilleumier S, Bringel F, Dispirito AA, Murrell JC, Bruce D, Cheng JF, Copeland A, Goodwin L, Hauser L, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T, Zeytun A, Stein LY.

Genome Announc. 2013 Apr 11;1(2):e0017013. doi: 10.1128/genomeA.00170-13.

31.

Complete genome sequences of six strains of the genus Methylobacterium.

Marx CJ, Bringel F, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman DE, Gruffaz C, Jourand P, Knief C, Lee MC, Muller EE, Nadalig T, Peyraud R, Roselli S, Russ L, Goodwin LA, Ivanova N, Kyrpides N, Lajus A, Land ML, Médigue C, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt JA, Vuilleumier S.

J Bacteriol. 2012 Sep;194(17):4746-8. doi: 10.1128/JB.01009-12.

32.

Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.

Vuilleumier S, Khmelenina VN, Bringel F, Reshetnikov AS, Lajus A, Mangenot S, Rouy Z, Op den Camp HJ, Jetten MS, Dispirito AA, Dunfield P, Klotz MG, Semrau JD, Stein LY, Barbe V, Médigue C, Trotsenko YA, Kalyuzhnaya MG.

J Bacteriol. 2012 Jan;194(2):551-2. doi: 10.1128/JB.06392-11.

33.

Investigation of biomarkers of bile tolerance in Lactobacillus casei using comparative proteomics.

Hamon E, Horvatovich P, Bisch M, Bringel F, Marchioni E, Aoudé-Werner D, Ennahar S.

J Proteome Res. 2012 Jan 1;11(1):109-18. doi: 10.1021/pr200828t. Epub 2011 Nov 17.

PMID:
22040141
34.

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.

Vuilleumier S, Nadalig T, Ul Haque MF, Magdelenat G, Lajus A, Roselli S, Muller EE, Gruffaz C, Barbe V, Médigue C, Bringel F.

J Bacteriol. 2011 Sep;193(18):5035-6. doi: 10.1128/JB.05627-11.

35.

Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4.

Muller EE, Hourcade E, Louhichi-Jelail Y, Hammann P, Vuilleumier S, Bringel F.

Environ Microbiol. 2011 Sep;13(9):2518-35. doi: 10.1111/j.1462-2920.2011.02524.x. Epub 2011 Aug 19.

PMID:
21854516
36.

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.

Svenning MM, Hestnes AG, Wartiainen I, Stein LY, Klotz MG, Kalyuzhnaya MG, Spang A, Bringel F, Vuilleumier S, Lajus A, Médigue C, Bruce DC, Cheng JF, Goodwin L, Ivanova N, Han J, Han CS, Hauser L, Held B, Land ML, Lapidus A, Lucas S, Nolan M, Pitluck S, Woyke T.

J Bacteriol. 2011 Nov;193(22):6418-9. doi: 10.1128/JB.05380-11. Epub 2011 Jul 1.

37.

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.

Kittichotirat W, Good NM, Hall R, Bringel F, Lajus A, Médigue C, Smalley NE, Beck D, Bumgarner R, Vuilleumier S, Kalyuzhnaya MG.

J Bacteriol. 2011 Sep;193(17):4541-2. doi: 10.1128/JB.05331-11. Epub 2011 Jul 1.

38.

Detection and isolation of chloromethane-degrading bacteria from the Arabidopsis thaliana phyllosphere, and characterization of chloromethane utilization genes.

Nadalig T, Farhan Ul Haque M, Roselli S, Schaller H, Bringel F, Vuilleumier S.

FEMS Microbiol Ecol. 2011 Aug;77(2):438-48. doi: 10.1111/j.1574-6941.2011.01125.x. Epub 2011 Jun 8.

39.

Comparative proteomic analysis of Lactobacillus plantarum for the identification of key proteins in bile tolerance.

Hamon E, Horvatovich P, Izquierdo E, Bringel F, Marchioni E, Aoudé-Werner D, Ennahar S.

BMC Microbiol. 2011 Mar 29;11:63. doi: 10.1186/1471-2180-11-63.

40.

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

Stein LY, Bringel F, DiSpirito AA, Han S, Jetten MS, Kalyuzhnaya MG, Kits KD, Klotz MG, Op den Camp HJ, Semrau JD, Vuilleumier S, Bruce DC, Cheng JF, Davenport KW, Goodwin L, Han S, Hauser L, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T.

J Bacteriol. 2011 May;193(10):2668-9. doi: 10.1128/JB.00278-11. Epub 2011 Mar 25.

41.

Dichloromethane-degrading bacteria in the genomic age.

Muller EE, Bringel F, Vuilleumier S.

Res Microbiol. 2011 Nov;162(9):869-76. doi: 10.1016/j.resmic.2011.01.008. Epub 2011 Feb 1.

PMID:
21288483
42.

Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b.

Stein LY, Yoon S, Semrau JD, Dispirito AA, Crombie A, Murrell JC, Vuilleumier S, Kalyuzhnaya MG, Op den Camp HJ, Bringel F, Bruce D, Cheng JF, Copeland A, Goodwin L, Han S, Hauser L, Jetten MS, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T, Zeytun A, Klotz MG.

J Bacteriol. 2010 Dec;192(24):6497-8. doi: 10.1128/JB.01144-10. Epub 2010 Oct 15.

43.

Microbial degradation of tetrachloromethane: mechanisms and perspectives for bioremediation.

Penny C, Vuilleumier S, Bringel F.

FEMS Microbiol Ecol. 2010 Nov;74(2):257-75. doi: 10.1111/j.1574-6941.2010.00935.x. Epub 2010 Aug 2. Review.

44.

Expanding importance of mRNA expression in understanding stress and stress responses.

Couée I, Bringel F.

J Theor Biol. 2010 Oct 7;266(3):479-82. doi: 10.1016/j.jtbi.2010.07.011. Epub 2010 Jul 17. No abstract available.

PMID:
20643149
45.

Coupling of denaturing high-performance liquid chromatography and terminal restriction fragment length polymorphism with precise fragment sizing for microbial community profiling and characterization.

Penny C, Nadalig T, Alioua M, Gruffaz C, Vuilleumier S, Bringel F.

Appl Environ Microbiol. 2010 Feb;76(3):648-51. doi: 10.1128/AEM.01556-09. Epub 2009 Nov 30.

46.

Uracil salvage is necessary for early Arabidopsis development.

Mainguet SE, Gakière B, Majira A, Pelletier S, Bringel F, Guérard F, Caboche M, Berthomé R, Renou JP.

Plant J. 2009 Oct;60(2):280-91. doi: 10.1111/j.1365-313X.2009.03963.x. Epub 2009 Jul 23.

47.

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.

Vuilleumier S, Chistoserdova L, Lee MC, Bringel F, Lajus A, Zhou Y, Gourion B, Barbe V, Chang J, Cruveiller S, Dossat C, Gillett W, Gruffaz C, Haugen E, Hourcade E, Levy R, Mangenot S, Muller E, Nadalig T, Pagni M, Penny C, Peyraud R, Robinson DG, Roche D, Rouy Z, Saenampechek C, Salvignol G, Vallenet D, Wu Z, Marx CJ, Vorholt JA, Olson MV, Kaul R, Weissenbach J, Médigue C, Lidstrom ME.

PLoS One. 2009;4(5):e5584. doi: 10.1371/journal.pone.0005584. Epub 2009 May 18.

48.

Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism.

Bringel F, Hammann P, Kugler V, Arsène-Ploetze F.

Microbiology. 2008 Sep;154(Pt 9):2629-40. doi: 10.1099/mic.0.2008/018184-0.

PMID:
18757797
49.

Low carbamoyl phosphate pools may drive Lactobacillus plantarum CO2-dependent growth phenotype.

Bringel F, Vuilleumier S, Arsène-Ploetze F.

J Mol Microbiol Biotechnol. 2008;14(1-3):22-30. Review.

PMID:
17957107

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