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Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context.

Barone M, Turroni S, Rampelli S, Soverini M, D'Amico F, Biagi E, Brigidi P, Troiani E, Candela M.

PLoS One. 2019 Aug 8;14(8):e0220619. doi: 10.1371/journal.pone.0220619. eCollection 2019.


HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples.

Soverini M, Turroni S, Biagi E, Brigidi P, Candela M, Rampelli S.

BMC Genomics. 2019 Jun 15;20(1):496. doi: 10.1186/s12864-019-5883-y.


A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans.

Benítez-Páez A, Kjølbæk L, Gómez Del Pulgar EM, Brahe LK, Astrup A, Matysik S, Schött HF, Krautbauer S, Liebisch G, Boberska J, Claus S, Rampelli S, Brigidi P, Larsen LH, Sanz Y.

mSystems. 2019 May 28;4(4). pii: e00209-19. doi: 10.1128/mSystems.00209-19.


Mechanisms underlying the cardiometabolic protective effect of walnut consumption in obese people: A cross-over, randomized, double-blind, controlled inpatient physiology study.

Tuccinardi D, Farr OM, Upadhyay J, Oussaada SM, Klapa MI, Candela M, Rampelli S, Lehoux S, Lázaro I, Sala-Vila A, Brigidi P, Cummings RD, Mantzoros CS.

Diabetes Obes Metab. 2019 Sep;21(9):2086-2095. doi: 10.1111/dom.13773. Epub 2019 Jul 2.


Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation.

D'Amico F, Soverini M, Zama D, Consolandi C, Severgnini M, Prete A, Pession A, Barone M, Turroni S, Biagi E, Brigidi P, Masetti R, Rampelli S, Candela M.

Sci Rep. 2019 Apr 4;9(1):5649. doi: 10.1038/s41598-019-42222-w.


A Mediterranean Diet Mix Has Chemopreventive Effects in a Murine Model of Colorectal Cancer Modulating Apoptosis and the Gut Microbiota.

Piazzi G, Prossomariti A, Baldassarre M, Montagna C, Vitaglione P, Fogliano V, Biagi E, Candela M, Brigidi P, Balbi T, Munarini A, Belluzzi A, Pariali M, Bazzoli F, Ricciardiello L.

Front Oncol. 2019 Mar 12;9:140. doi: 10.3389/fonc.2019.00140. eCollection 2019.


Early gut microbiota signature of aGvHD in children given allogeneic hematopoietic cell transplantation for hematological disorders.

Biagi E, Zama D, Rampelli S, Turroni S, Brigidi P, Consolandi C, Severgnini M, Picotti E, Gasperini P, Merli P, Decembrino N, Zecca M, Cesaro S, Faraci M, Prete A, Locatelli F, Pession A, Candela M, Masetti R.

BMC Med Genomics. 2019 Mar 7;12(1):49. doi: 10.1186/s12920-019-0494-7.


Arabinoxylan oligosaccharides and polyunsaturated fatty acid effects on gut microbiota and metabolic markers in overweight individuals with signs of metabolic syndrome: A randomized cross-over trial.

Kjølbæk L, Benítez-Páez A, Gómez Del Pulgar EM, Brahe LK, Liebisch G, Matysik S, Rampelli S, Vermeiren J, Brigidi P, Larsen LH, Astrup A, Sanz Y.

Clin Nutr. 2019 Feb 19. pii: S0261-5614(19)30030-5. doi: 10.1016/j.clnu.2019.01.012. [Epub ahead of print]


In Vivo Effects of Einkorn Wheat (Triticum monococcum) Bread on the Intestinal Microbiota, Metabolome, and on the Glycemic and Insulinemic Response in the Pig Model.

Barone F, Laghi L, Gianotti A, Ventrella D, Saa DLT, Bordoni A, Forni M, Brigidi P, Bacci ML, Turroni S.

Nutrients. 2018 Dec 20;11(1). pii: E16. doi: 10.3390/nu11010016.


Pre-obese children's dysbiotic gut microbiome and unhealthy diets may predict the development of obesity.

Rampelli S, Guenther K, Turroni S, Wolters M, Veidebaum T, Kourides Y, Molnár D, Lissner L, Benitez-Paez A, Sanz Y, Fraterman A, Michels N, Brigidi P, Candela M, Ahrens W.

Commun Biol. 2018 Dec 7;1:222. doi: 10.1038/s42003-018-0221-5. eCollection 2018.


Microbial Community Dynamics in Mother's Milk and Infant's Mouth and Gut in Moderately Preterm Infants.

Biagi E, Aceti A, Quercia S, Beghetti I, Rampelli S, Turroni S, Soverini M, Zambrini AV, Faldella G, Candela M, Corvaglia L, Brigidi P.

Front Microbiol. 2018 Oct 22;9:2512. doi: 10.3389/fmicb.2018.02512. eCollection 2018.


The Rootstock Regulates Microbiome Diversity in Root and Rhizosphere Compartments of Vitis vinifera Cultivar Lambrusco.

D'Amico F, Candela M, Turroni S, Biagi E, Brigidi P, Bega A, Vancini D, Rampelli S.

Front Microbiol. 2018 Sep 26;9:2240. doi: 10.3389/fmicb.2018.02240. eCollection 2018.


High-protein diets for weight management: Interactions with the intestinal microbiota and consequences for gut health. A position paper by the my new gut study group.

Blachier F, Beaumont M, Portune KJ, Steuer N, Lan A, Audebert M, Khodorova N, Andriamihaja M, Airinei G, Benamouzig R, Davila AM, Armand L, Rampelli S, Brigidi P, Tomé D, Claus SP, Sanz Y.

Clin Nutr. 2019 Jun;38(3):1012-1022. doi: 10.1016/j.clnu.2018.09.016. Epub 2018 Sep 20. Review.


Simultaneous HS-SPME GC-MS determination of short chain fatty acids, trimethylamine and trimethylamine N-oxide for gut microbiota metabolic profile.

Fiori J, Turroni S, Candela M, Brigidi P, Gotti R.

Talanta. 2018 Nov 1;189:573-578. doi: 10.1016/j.talanta.2018.07.051. Epub 2018 Jul 17.


Faecal bacterial communities from Mediterranean loggerhead sea turtles (Caretta caretta).

Biagi E, D'Amico F, Soverini M, Angelini V, Barone M, Turroni S, Rampelli S, Pari S, Brigidi P, Candela M.

Environ Microbiol Rep. 2019 Jun;11(3):361-371. doi: 10.1111/1758-2229.12683. Epub 2018 Sep 9.


Towards microbiome-informed dietary recommendations for promoting metabolic and mental health: Opinion papers of the MyNewGut project.

Sanz Y, Romaní-Perez M, Benítez-Páez A, Portune KJ, Brigidi P, Rampelli S, Dinan T, Stanton C, Delzenne N, Blachier F, Neyrinck AM, Beaumont M, Olivares M, Holzer P, Günther K, Wolters M, Ahrens W, Claus SP, Campoy C, Murphy R, Sadler C, Fernández L, Kamp JV.

Clin Nutr. 2018 Dec;37(6 Pt A):2191-2197. doi: 10.1016/j.clnu.2018.07.007. Epub 2018 Jul 9.


Early colonisation and temporal dynamics of the gut microbial ecosystem in Standardbred foals.

Quercia S, Freccero F, Castagnetti C, Soverini M, Turroni S, Biagi E, Rampelli S, Lanci A, Mariella J, Chinellato E, Brigidi P, Candela M.

Equine Vet J. 2019 Mar;51(2):231-237. doi: 10.1111/evj.12983. Epub 2018 Jul 25.


Infant and Adult Gut Microbiome and Metabolome in Rural Bassa and Urban Settlers from Nigeria.

Ayeni FA, Biagi E, Rampelli S, Fiori J, Soverini M, Audu HJ, Cristino S, Caporali L, Schnorr SL, Carelli V, Brigidi P, Candela M, Turroni S.

Cell Rep. 2018 Jun 5;23(10):3056-3067. doi: 10.1016/j.celrep.2018.05.018.


A Versatile New Model of Chemically Induced Chronic Colitis Using an Outbred Murine Strain.

Barone M, Chain F, Sokol H, Brigidi P, Bermúdez-Humarán LG, Langella P, Martín R.

Front Microbiol. 2018 Mar 27;9:565. doi: 10.3389/fmicb.2018.00565. eCollection 2018.


An in vivo assessment of the cholesterol-lowering efficacy of Lactobacillus plantarum ECGC 13110402 in normal to mildly hypercholesterolaemic adults.

Costabile A, Buttarazzi I, Kolida S, Quercia S, Baldini J, Swann JR, Brigidi P, Gibson GR.

PLoS One. 2017 Dec 11;12(12):e0187964. doi: 10.1371/journal.pone.0187964. eCollection 2017.


Variation of Carbohydrate-Active Enzyme Patterns in the Gut Microbiota of Italian Healthy Subjects and Type 2 Diabetes Patients.

Soverini M, Turroni S, Biagi E, Quercia S, Brigidi P, Candela M, Rampelli S.

Front Microbiol. 2017 Oct 24;8:2079. doi: 10.3389/fmicb.2017.02079. eCollection 2017.


Gut microbiota changes in the extreme decades of human life: a focus on centenarians.

Santoro A, Ostan R, Candela M, Biagi E, Brigidi P, Capri M, Franceschi C.

Cell Mol Life Sci. 2018 Jan;75(1):129-148. doi: 10.1007/s00018-017-2674-y. Epub 2017 Oct 14. Review.


Characterization of the human DNA gut virome across populations with different subsistence strategies and geographical origin.

Rampelli S, Turroni S, Schnorr SL, Soverini M, Quercia S, Barone M, Castagnetti A, Biagi E, Gallinella G, Brigidi P, Candela M.

Environ Microbiol. 2017 Nov;19(11):4728-4735. doi: 10.1111/1462-2920.13938. Epub 2017 Oct 27.


Unraveling the gut microbiome of the long-lived naked mole-rat.

Debebe T, Biagi E, Soverini M, Holtze S, Hildebrandt TB, Birkemeyer C, Wyohannis D, Lemma A, Brigidi P, Savkovic V, König B, Candela M, Birkenmeier G.

Sci Rep. 2017 Aug 29;7(1):9590. doi: 10.1038/s41598-017-10287-0.


Gut microbiome response to short-term dietary interventions in reactive hypoglycemia subjects.

Quercia S, Turroni S, Fiori J, Soverini M, Rampelli S, Biagi E, Castagnetti A, Consolandi C, Severgnini M, Pianesi M, Fallucca F, Pozzilli P, Brigidi P, Candela M.

Diabetes Metab Res Rev. 2017 Nov;33(8). doi: 10.1002/dmrr.2927. Epub 2017 Sep 15.


Short-term treatment with eicosapentaenoic acid improves inflammation and affects colonic differentiation markers and microbiota in patients with ulcerative colitis.

Prossomariti A, Scaioli E, Piazzi G, Fazio C, Bellanova M, Biagi E, Candela M, Brigidi P, Consolandi C, Balbi T, Chieco P, Munarini A, Pariali M, Minguzzi M, Bazzoli F, Belluzzi A, Ricciardiello L.

Sci Rep. 2017 Aug 7;7(1):7458. doi: 10.1038/s41598-017-07992-1.


Microbiota-Host Transgenomic Metabolism, Bioactive Molecules from the Inside.

Turroni S, Brigidi P, Cavalli A, Candela M.

J Med Chem. 2018 Jan 11;61(1):47-61. doi: 10.1021/acs.jmedchem.7b00244. Epub 2017 Aug 3. Review.


The Bacterial Ecosystem of Mother's Milk and Infant's Mouth and Gut.

Biagi E, Quercia S, Aceti A, Beghetti I, Rampelli S, Turroni S, Faldella G, Candela M, Brigidi P, Corvaglia L.

Front Microbiol. 2017 Jun 30;8:1214. doi: 10.3389/fmicb.2017.01214. eCollection 2017.


Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500.

Turroni S, Rampelli S, Biagi E, Consolandi C, Severgnini M, Peano C, Quercia S, Soverini M, Carbonero FG, Bianconi G, Rettberg P, Canganella F, Brigidi P, Candela M.

Microbiome. 2017 Mar 24;5(1):39. doi: 10.1186/s40168-017-0256-8.


Potential role of the gut microbiota in synthetic torpor and therapeutic hypothermia.

Sisa C, Turroni S, Amici R, Brigidi P, Candela M, Cerri M.

World J Gastroenterol. 2017 Jan 21;23(3):406-413. doi: 10.3748/wjg.v23.i3.406. Review.


The gut microbiota of centenarians: Signatures of longevity in the gut microbiota profile.

Biagi E, Rampelli S, Turroni S, Quercia S, Candela M, Brigidi P.

Mech Ageing Dev. 2017 Jul;165(Pt B):180-184. doi: 10.1016/j.mad.2016.12.013. Epub 2016 Dec 31. Review.


Fecal metabolome of the Hadza hunter-gatherers: a host-microbiome integrative view.

Turroni S, Fiori J, Rampelli S, Schnorr SL, Consolandi C, Barone M, Biagi E, Fanelli F, Mezzullo M, Crittenden AN, Henry AG, Brigidi P, Candela M.

Sci Rep. 2016 Sep 14;6:32826. doi: 10.1038/srep32826.


Gut microbiota, metabolome and immune signatures in patients with uncomplicated diverticular disease.

Barbara G, Scaioli E, Barbaro MR, Biagi E, Laghi L, Cremon C, Marasco G, Colecchia A, Picone G, Salfi N, Capozzi F, Brigidi P, Festi D.

Gut. 2017 Jul;66(7):1252-1261. doi: 10.1136/gutjnl-2016-312377. Epub 2016 Sep 12.


Variations in the Post-weaning Human Gut Metagenome Profile As Result of Bifidobacterium Acquisition in the Western Microbiome.

Soverini M, Rampelli S, Turroni S, Schnorr SL, Quercia S, Castagnetti A, Biagi E, Brigidi P, Candela M.

Front Microbiol. 2016 Jul 12;7:1058. doi: 10.3389/fmicb.2016.01058. eCollection 2016.


Enterocyte-Associated Microbiome of the Hadza Hunter-Gatherers.

Turroni S, Rampelli S, Centanni M, Schnorr SL, Consolandi C, Severgnini M, Peano C, Soverini M, Falconi M, Crittenden AN, Henry AG, Brigidi P, Candela M.

Front Microbiol. 2016 Jun 6;7:865. doi: 10.3389/fmicb.2016.00865. eCollection 2016.


Gut microbiota and hematopoietic stem cell transplantation: where do we stand?

Zama D, Biagi E, Masetti R, Gasperini P, Prete A, Candela M, Brigidi P, Pession A.

Bone Marrow Transplant. 2017 Jan;52(1):7-14. doi: 10.1038/bmt.2016.173. Epub 2016 Jun 27. Review.


Gut Microbiota and Extreme Longevity.

Biagi E, Franceschi C, Rampelli S, Severgnini M, Ostan R, Turroni S, Consolandi C, Quercia S, Scurti M, Monti D, Capri M, Brigidi P, Candela M.

Curr Biol. 2016 Jun 6;26(11):1480-5. doi: 10.1016/j.cub.2016.04.016. Epub 2016 May 12.


Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet.

Candela M, Biagi E, Soverini M, Consolandi C, Quercia S, Severgnini M, Peano C, Turroni S, Rampelli S, Pozzilli P, Pianesi M, Fallucca F, Brigidi P.

Br J Nutr. 2016 Jul;116(1):80-93. doi: 10.1017/S0007114516001045. Epub 2016 May 6.


The bottlenose dolphin (Tursiops truncatus) faecal microbiota.

Soverini M, Quercia S, Biancani B, Furlati S, Turroni S, Biagi E, Consolandi C, Peano C, Severgnini M, Rampelli S, Brigidi P, Candela M.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw055. doi: 10.1093/femsec/fiw055. Epub 2016 Mar 8.


ViromeScan: a new tool for metagenomic viral community profiling.

Rampelli S, Soverini M, Turroni S, Quercia S, Biagi E, Brigidi P, Candela M.

BMC Genomics. 2016 Mar 1;17:165. doi: 10.1186/s12864-016-2446-3.


Ex-vivoand in-vitro assessment of mucoadhesive patches containing the gel-forming polysaccharide psyllium for buccal delivery of chlorhexidine base.

Cavallari C, Brigidi P, Fini A.

Int J Pharm. 2015 Dec 30;496(2):593-600. doi: 10.1016/j.ijpharm.2015.10.077. Epub 2015 Nov 2.


The effect of short-chain fatty acids on human monocyte-derived dendritic cells.

Nastasi C, Candela M, Bonefeld CM, Geisler C, Hansen M, Krejsgaard T, Biagi E, Andersen MH, Brigidi P, Ødum N, Litman T, Woetmann A.

Sci Rep. 2015 Nov 6;5:16148. doi: 10.1038/srep16148.


High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome.

De Filippis F, Pellegrini N, Vannini L, Jeffery IB, La Storia A, Laghi L, Serrazanetti DI, Di Cagno R, Ferrocino I, Lazzi C, Turroni S, Cocolin L, Brigidi P, Neviani E, Gobbetti M, O'Toole PW, Ercolini D.

Gut. 2016 Nov;65(11):1812-1821. doi: 10.1136/gutjnl-2015-309957. Epub 2015 Sep 28.


Impact of diet and nutraceutical supplementation on inflammation in elderly people. Results from the RISTOMED study, an open-label randomized control trial.

Ostan R, Béné MC, Spazzafumo L, Pinto A, Donini LM, Pryen F, Charrouf Z, Valentini L, Lochs H, Bourdel-Marchasson I, Blanc-Bisson C, Buccolini F, Brigidi P, Franceschi C, d'Alessio PA.

Clin Nutr. 2016 Aug;35(4):812-8. doi: 10.1016/j.clnu.2015.06.010. Epub 2015 Jul 15.


Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota.

Rampelli S, Schnorr SL, Consolandi C, Turroni S, Severgnini M, Peano C, Brigidi P, Crittenden AN, Henry AG, Candela M.

Curr Biol. 2015 Jun 29;25(13):1682-93. doi: 10.1016/j.cub.2015.04.055. Epub 2015 May 14.


Gut microbiota trajectory in pediatric patients undergoing hematopoietic SCT.

Biagi E, Zama D, Nastasi C, Consolandi C, Fiori J, Rampelli S, Turroni S, Centanni M, Severgnini M, Peano C, de Bellis G, Basaglia G, Gotti R, Masetti R, Pession A, Brigidi P, Candela M.

Bone Marrow Transplant. 2015 Jul;50(7):992-8. doi: 10.1038/bmt.2015.16. Epub 2015 Apr 20.


Development of a microarray-based tool to characterize vaginal bacterial fluctuations and application to a novel antibiotic treatment for bacterial vaginosis.

Cruciani F, Biagi E, Severgnini M, Consolandi C, Calanni F, Donders G, Brigidi P, Vitali B.

Antimicrob Agents Chemother. 2015 May;59(5):2825-34. doi: 10.1128/AAC.00225-15. Epub 2015 Mar 2.


Impact of personalized diet and probiotic supplementation on inflammation, nutritional parameters and intestinal microbiota - The "RISTOMED project": Randomized controlled trial in healthy older people.

Valentini L, Pinto A, Bourdel-Marchasson I, Ostan R, Brigidi P, Turroni S, Hrelia S, Hrelia P, Bereswill S, Fischer A, Leoncini E, Malaguti M, Blanc-Bisson C, Durrieu J, Spazzafumo L, Buccolini F, Pryen F, Donini LM, Franceschi C, Lochs H.

Clin Nutr. 2015 Aug;34(4):593-602. doi: 10.1016/j.clnu.2014.09.023. Epub 2014 Oct 8.


Behçet's syndrome patients exhibit specific microbiome signature.

Consolandi C, Turroni S, Emmi G, Severgnini M, Fiori J, Peano C, Biagi E, Grassi A, Rampelli S, Silvestri E, Centanni M, Cianchi F, Gotti R, Emmi L, Brigidi P, Bizzaro N, De Bellis G, Prisco D, Candela M, D'Elios MM.

Autoimmun Rev. 2015 Apr;14(4):269-76. doi: 10.1016/j.autrev.2014.11.009. Epub 2014 Nov 27.


From lifetime to evolution: timescales of human gut microbiota adaptation.

Quercia S, Candela M, Giuliani C, Turroni S, Luiselli D, Rampelli S, Brigidi P, Franceschi C, Bacalini MG, Garagnani P, Pirazzini C.

Front Microbiol. 2014 Nov 4;5:587. doi: 10.3389/fmicb.2014.00587. eCollection 2014. Review.

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