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Items: 1 to 50 of 93

1.

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions.

Zhou P, Li Z, Magnusson E, Cano FAG, Crisp PA, Noshay J, Grotewold E, Hirsch C, Briggs SP, Springer NM.

Plant Cell. 2020 Mar 17. pii: tpc.00080.2020. doi: 10.1105/tpc.20.00080. [Epub ahead of print]

2.

Wnt5a induces ROR1 to recruit cortactin to promote breast-cancer migration and metastasis.

Hasan MK, Widhopf GF 2nd, Zhang S, Lam SM, Shen Z, Briggs SP, Parker BA, Kipps TJ.

NPJ Breast Cancer. 2019 Oct 25;5:35. doi: 10.1038/s41523-019-0131-9. eCollection 2019.

3.

Multiple genes recruited from hormone pathways partition maize diterpenoid defences.

Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA.

Nat Plants. 2019 Oct;5(10):1043-1056. doi: 10.1038/s41477-019-0509-6. Epub 2019 Sep 16.

PMID:
31527844
4.

Identification of the expressome by machine learning on omics data.

Sartor RC, Noshay J, Springer NM, Briggs SP.

Proc Natl Acad Sci U S A. 2019 Sep 3;116(36):18119-18125. doi: 10.1073/pnas.1813645116. Epub 2019 Aug 16.

5.

Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings.

Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR.

Proteomics. 2019 Sep;19(17):e1900199. doi: 10.1002/pmic.201900199. Epub 2019 Aug 16.

PMID:
31381813
6.

LIKE SEX4 1 Acts as a β-Amylase-Binding Scaffold on Starch Granules during Starch Degradation.

Schreier TB, Umhang M, Lee SK, Lue WL, Shen Z, Silver D, Graf A, Müller A, Eicke S, Stadler-Waibel M, Seung D, Bischof S, Briggs SP, Kötting O, Moorhead GBG, Chen J, Zeeman SC.

Plant Cell. 2019 Sep;31(9):2169-2186. doi: 10.1105/tpc.19.00089. Epub 2019 Jul 2.

7.

Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance.

Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR.

Mol Cell Proteomics. 2019 Jun;18(6):1157-1170. doi: 10.1074/mcp.RA119.001378. Epub 2019 Mar 27.

8.

Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival.

Lee DD, Galera-Laporta L, Bialecka-Fornal M, Moon EC, Shen Z, Briggs SP, Garcia-Ojalvo J, Süel GM.

Cell. 2019 Apr 4;177(2):352-360.e13. doi: 10.1016/j.cell.2019.01.042. Epub 2019 Mar 7.

9.

Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development.

Zhou P, Hirsch CN, Briggs SP, Springer NM.

Mol Plant. 2019 Mar 4;12(3):410-425. doi: 10.1016/j.molp.2018.12.015. Epub 2018 Dec 27.

10.

Wnt5a induces ROR1 to recruit DOCK2 to activate Rac1/2 in chronic lymphocytic leukemia.

Hasan MK, Yu J, Widhopf GF 2nd, Rassenti LZ, Chen L, Shen Z, Briggs SP, Neuberg DS, Kipps TJ.

Blood. 2018 Jul 12;132(2):170-178. doi: 10.1182/blood-2017-12-819383. Epub 2018 Apr 20.

11.

Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize.

Mafu S, Ding Y, Murphy KM, Yaacoobi O, Addison JB, Wang Q, Shen Z, Briggs SP, Bohlmann J, Castro-Falcon G, Hughes CC, Betsiashvili M, Huffaker A, Schmelz EA, Zerbe P.

Plant Physiol. 2018 Apr;176(4):2677-2690. doi: 10.1104/pp.17.01351. Epub 2018 Feb 23.

12.

The Dictyostelium GSK3 kinase GlkA coordinates signal relay and chemotaxis in response to growth conditions.

Lacal Romero J, Shen Z, Baumgardner K, Wei J, Briggs SP, Firtel RA.

Dev Biol. 2018 Mar 1;435(1):56-72. doi: 10.1016/j.ydbio.2018.01.007. Epub 2018 Jan 20.

13.

Fungal-induced protein hyperacetylation in maize identified by acetylome profiling.

Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):210-215. doi: 10.1073/pnas.1717519115. Epub 2017 Dec 19.

14.

Initiation of ER Body Formation and Indole Glucosinolate Metabolism by the Plastidial Retrograde Signaling Metabolite, MEcPP.

Wang JZ, Li B, Xiao Y, Ni Y, Ke H, Yang P, de Souza A, Bjornson M, He X, Shen Z, Balcke GU, Briggs SP, Tissier A, Kliebenstein DJ, Dehesh K.

Mol Plant. 2017 Nov 6;10(11):1400-1416. doi: 10.1016/j.molp.2017.09.012. Epub 2017 Sep 28.

15.

Wnt5a induces ROR1 to complex with HS1 to enhance migration of chronic lymphocytic leukemia cells.

Hasan MK, Yu J, Chen L, Cui B, Widhopf Ii GF, Rassenti L, Shen Z, Briggs SP, Kipps TJ.

Leukemia. 2017 Dec;31(12):2615-2622. doi: 10.1038/leu.2017.133. Epub 2017 May 3.

16.

Wnt5a induces ROR1 to associate with 14-3-3ζ for enhanced chemotaxis and proliferation of chronic lymphocytic leukemia cells.

Yu J, Chen L, Chen Y, Hasan MK, Ghia EM, Zhang L, Wu R, Rassenti LZ, Widhopf GF, Shen Z, Briggs SP, Kipps TJ.

Leukemia. 2017 Dec;31(12):2608-2614. doi: 10.1038/leu.2017.132. Epub 2017 May 3.

17.

Integration of omic networks in a developmental atlas of maize.

Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP.

Science. 2016 Aug 19;353(6301):814-8. doi: 10.1126/science.aag1125.

18.

The small GTPases Ras and Rap1 bind to and control TORC2 activity.

Khanna A, Lotfi P, Chavan AJ, Montaño NM, Bolourani P, Weeks G, Shen Z, Briggs SP, Pots H, Van Haastert PJ, Kortholt A, Charest PG.

Sci Rep. 2016 May 13;6:25823. doi: 10.1038/srep25823.

19.

Dual use of peptide mass spectra: Protein atlas and genome annotation.

Walley JW, Briggs SP.

Curr Plant Biol. 2015 May 1;2:21-24. Epub 2015 Apr 13.

20.

Wnt5a induces ROR1/ROR2 heterooligomerization to enhance leukemia chemotaxis and proliferation.

Yu J, Chen L, Cui B, Widhopf GF 2nd, Shen Z, Wu R, Zhang L, Zhang S, Briggs SP, Kipps TJ.

J Clin Invest. 2016 Feb;126(2):585-98.

21.

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.

Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA.

Mol Cell Proteomics. 2016 Jan;15(1):201-17. doi: 10.1074/mcp.M115.054064. Epub 2015 Nov 6.

22.

Experimental drought and heat can delay phenological development and reduce foliar and shoot growth in semiarid trees.

Adams HD, Collins AD, Briggs SP, Vennetier M, Dickman LT, Sevanto SA, Garcia-Forner N, Powers HH, McDowell NG.

Glob Chang Biol. 2015 Nov;21(11):4210-20. doi: 10.1111/gcb.13030. Epub 2015 Sep 22.

PMID:
26149972
23.

Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum.

Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs SP, Dehesh K.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):6212-7. doi: 10.1073/pnas.1504828112. Epub 2015 Apr 28.

24.

A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes.

Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F.

Plant Physiol. 2015 May;168(1):233-46. doi: 10.1104/pp.15.00138. Epub 2015 Mar 16.

25.

Stemness factor Sall4 is required for DNA damage response in embryonic stem cells.

Xiong J, Todorova D, Su NY, Kim J, Lee PJ, Shen Z, Briggs SP, Xu Y.

J Cell Biol. 2015 Mar 2;208(5):513-20. doi: 10.1083/jcb.201408106.

26.

Potato aphid salivary proteome: enhanced salivation using resorcinol and identification of aphid phosphoproteins.

Chaudhary R, Atamian HS, Shen Z, Briggs SP, Kaloshian I.

J Proteome Res. 2015 Apr 3;14(4):1762-78. doi: 10.1021/pr501128k. Epub 2015 Mar 6.

27.

Response and adaptation of Escherichia coli to suppression of the amber stop codon.

Wang Q, Sun T, Xu J, Shen Z, Briggs SP, Zhou D, Wang L.

Chembiochem. 2014 Aug 18;15(12):1744-9. doi: 10.1002/cbic.201402235. Epub 2014 Jul 8.

28.

GroEL from the endosymbiont Buchnera aphidicola betrays the aphid by triggering plant defense.

Chaudhary R, Atamian HS, Shen Z, Briggs SP, Kaloshian I.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8919-24. doi: 10.1073/pnas.1407687111. Epub 2014 Jun 3.

29.

UV irradiation accelerates amyloid precursor protein (APP) processing and disrupts APP axonal transport.

Almenar-Queralt A, Falzone TL, Shen Z, Lillo C, Killian RL, Arreola AS, Niederst ED, Ng KS, Kim SN, Briggs SP, Williams DS, Goldstein LS.

J Neurosci. 2014 Feb 26;34(9):3320-39. doi: 10.1523/JNEUROSCI.1503-13.2014.

30.

ROR1 can interact with TCL1 and enhance leukemogenesis in Eμ-TCL1 transgenic mice.

Widhopf GF 2nd, Cui B, Ghia EM, Chen L, Messer K, Shen Z, Briggs SP, Croce CM, Kipps TJ.

Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):793-8. doi: 10.1073/pnas.1308374111. Epub 2013 Dec 30.

31.

Reconstruction of protein networks from an atlas of maize seed proteotypes.

Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):E4808-17. doi: 10.1073/pnas.1319113110. Epub 2013 Nov 18.

32.

An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.

Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V.

Mol Cell Proteomics. 2014 Jan;13(1):157-67. doi: 10.1074/mcp.M113.031260. Epub 2013 Oct 18.

33.

Quantitative proteomic and functional analysis of liver mitochondria from high fat diet (HFD) diabetic mice.

Guo Y, Darshi M, Ma Y, Perkins GA, Shen Z, Haushalter KJ, Saito R, Chen A, Lee YS, Patel HH, Briggs SP, Ellisman MH, Olefsky JM, Taylor SS.

Mol Cell Proteomics. 2013 Dec;12(12):3744-58. doi: 10.1074/mcp.M113.027441. Epub 2013 Sep 12.

34.

Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development.

Facette MR, Shen Z, Björnsdóttir FR, Briggs SP, Smith LG.

Plant Cell. 2013 Aug;25(8):2798-812. doi: 10.1105/tpc.113.112227. Epub 2013 Aug 9.

35.

Response to perspective: "separation anxiety: an analysis of ethylene-induced cleavage of EIN2".

Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR.

Plant Signal Behav. 2013 Aug;8(8). pii: e25037. doi: 10.4161/psb.25037. Epub 2013 May 31.

36.

The need for agriculture phenotyping: "moving from genotype to phenotype".

Boggess MV, Lippolis JD, Hurkman WJ, Fagerquist CK, Briggs SP, Gomes AV, Righetti PG, Bala K.

J Proteomics. 2013 Nov 20;93:20-39. doi: 10.1016/j.jprot.2013.03.021. Epub 2013 Apr 2. Review.

PMID:
23563084
37.

Plant elicitor peptides are conserved signals regulating direct and indirect antiherbivore defense.

Huffaker A, Pearce G, Veyrat N, Erb M, Turlings TC, Sartor R, Shen Z, Briggs SP, Vaughan MM, Alborn HT, Teal PE, Schmelz EA.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5707-12. doi: 10.1073/pnas.1214668110. Epub 2013 Mar 18.

38.

Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize.

Zhang X, Facette M, Humphries JA, Shen Z, Park Y, Sutimantanapi D, Sylvester AW, Briggs SP, Smith LG.

Plant Cell. 2012 Nov;24(11):4577-89. doi: 10.1105/tpc.112.104125. Epub 2012 Nov 21.

39.

Daydreamer, a Ras effector and GSK-3 substrate, is important for directional sensing and cell motility.

Kölsch V, Shen Z, Lee S, Plak K, Lotfi P, Chang J, Charest PG, Romero JL, Jeon TJ, Kortholt A, Briggs SP, Firtel RA.

Mol Biol Cell. 2013 Jan;24(2):100-14. doi: 10.1091/mbc.E12-04-0271. Epub 2012 Nov 7.

40.

Robust expression and secretion of Xylanase1 in Chlamydomonas reinhardtii by fusion to a selection gene and processing with the FMDV 2A peptide.

Rasala BA, Lee PA, Shen Z, Briggs SP, Mendez M, Mayfield SP.

PLoS One. 2012;7(8):e43349. doi: 10.1371/journal.pone.0043349. Epub 2012 Aug 24.

41.

Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas.

Qiao H, Shen Z, Huang SS, Schmitz RJ, Urich MA, Briggs SP, Ecker JR.

Science. 2012 Oct 19;338(6105):390-3. doi: 10.1126/science.1225974. Epub 2012 Aug 30.

42.

Heterologous expression of the C-terminal antigenic domain of the malaria vaccine candidate Pfs48/45 in the green algae Chlamydomonas reinhardtii.

Jones CS, Luong T, Hannon M, Tran M, Gregory JA, Shen Z, Briggs SP, Mayfield SP.

Appl Microbiol Biotechnol. 2013 Mar;97(5):1987-95. doi: 10.1007/s00253-012-4071-7. Epub 2012 May 18.

PMID:
22592550
43.

Expanding the genetic code of Caenorhabditis elegans using bacterial aminoacyl-tRNA synthetase/tRNA pairs.

Parrish AR, She X, Xiang Z, Coin I, Shen Z, Briggs SP, Dillin A, Wang L.

ACS Chem Biol. 2012 Jul 20;7(7):1292-302. doi: 10.1021/cb200542j. Epub 2012 May 11.

44.

Accurate mass spectrometry based protein quantification via shared peptides.

Dost B, Bandeira N, Li X, Shen Z, Briggs SP, Bafna V.

J Comput Biol. 2012 Apr;19(4):337-48. doi: 10.1089/cmb.2009.0267. Epub 2012 Mar 13.

45.

Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47.

Teachenor R, Beck K, Wright LY, Shen Z, Briggs SP, Murre C.

Mol Cell Biol. 2012 May;32(9):1671-82. doi: 10.1128/MCB.06452-11. Epub 2012 Feb 21.

46.

Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors.

Ng DW, Zhang C, Miller M, Shen Z, Briggs SP, Chen ZJ.

Heredity (Edinb). 2012 Apr;108(4):419-30. doi: 10.1038/hdy.2011.92. Epub 2011 Oct 19.

47.

RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Johnson DB, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L.

Nat Chem Biol. 2011 Sep 18;7(11):779-86. doi: 10.1038/nchembio.657.

48.

A fluorescent reporter of the phosphorylation status of the substrate protein STAT3.

Lacey VK, Parrish AR, Han S, Shen Z, Briggs SP, Ma Y, Wang L.

Angew Chem Int Ed Engl. 2011 Sep 5;50(37):8692-6. doi: 10.1002/anie.201102923. Epub 2011 Jul 29. No abstract available.

49.

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.

50.

Regulation of STIM1 and SOCE by the ubiquitin-proteasome system (UPS).

Keil JM, Shen Z, Briggs SP, Patrick GN.

PLoS One. 2010 Oct 18;5(10):e13465. doi: 10.1371/journal.pone.0013465.

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