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Items: 1 to 50 of 154

1.

The Pentatricopeptide Repeat Protein MEF31 is Required for Editing at Site 581 of the Mitochondrial tatC Transcript and Indirectly Influences Editing at Site 586 of the Same Transcript.

Arenas-M A, González-Durán E, Gómez I, Burger M, Brennicke A, Takenaka M, Jordana X.

Plant Cell Physiol. 2018 Feb 1;59(2):355-365. doi: 10.1093/pcp/pcx190.

PMID:
29216369
2.

The conserved domain in MORF proteins has distinct affinities to the PPR and E elements in PPR RNA editing factors.

Bayer-Császár E, Haag S, Jörg A, Glass F, Härtel B, Obata T, Meyer EH, Brennicke A, Takenaka M.

Biochim Biophys Acta Gene Regul Mech. 2017 Aug;1860(8):813-828. doi: 10.1016/j.bbagrm.2017.05.004. Epub 2017 May 23.

PMID:
28549935
3.

Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9.

Haag S, Schindler M, Berndt L, Brennicke A, Takenaka M, Weber G.

Nucleic Acids Res. 2017 May 5;45(8):4915-4928. doi: 10.1093/nar/gkx099.

4.

Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.

Zehrmann A, Härtel B, Glass F, Bayer-Császár E, Obata T, Meyer E, Brennicke A, Takenaka M.

J Biol Chem. 2015 Mar 6;290(10):6445-56. doi: 10.1074/jbc.M114.602086. Epub 2015 Jan 12.

5.

RNA editing in plant mitochondria—connecting RNA target sequences and acting proteins.

Takenaka M, Verbitskiy D, Zehrmann A, Härtel B, Bayer-Császár E, Glass F, Brennicke A.

Mitochondrion. 2014 Nov;19 Pt B:191-7. doi: 10.1016/j.mito.2014.04.005. Epub 2014 Apr 13. Review.

PMID:
24732437
6.

The life of plant mitochondrial complex I.

Braun HP, Binder S, Brennicke A, Eubel H, Fernie AR, Finkemeier I, Klodmann J, König AC, Kühn K, Meyer E, Obata T, Schwarzländer M, Takenaka M, Zehrmann A.

Mitochondrion. 2014 Nov;19 Pt B:295-313. doi: 10.1016/j.mito.2014.02.006. Epub 2014 Feb 21.

PMID:
24561573
7.

RNA editing in plants and its evolution.

Takenaka M, Zehrmann A, Verbitskiy D, Härtel B, Brennicke A.

Annu Rev Genet. 2013;47:335-52. doi: 10.1146/annurev-genet-111212-133519. Review.

PMID:
24274753
8.

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.

Takenaka M, Zehrmann A, Brennicke A, Graichen K.

PLoS One. 2013 Jun 6;8(6):e65343. doi: 10.1371/journal.pone.0065343. Print 2013.

9.

MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.

Härtel B, Zehrmann A, Verbitskiy D, van der Merwe JA, Brennicke A, Takenaka M.

Plant Mol Biol. 2013 Mar;81(4-5):337-46. doi: 10.1007/s11103-012-0003-2. Epub 2013 Jan 4.

PMID:
23288601
10.

Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Takenaka M, Brennicke A.

Nat Protoc. 2012 Nov;7(11):1931-45. doi: 10.1038/nprot.2012.117. Epub 2012 Oct 4.

PMID:
23037308
11.

Two related RNA-editing proteins target the same sites in mitochondria of Arabidopsis thaliana.

Verbitskiy D, Zehrmann A, Härtel B, Brennicke A, Takenaka M.

J Biol Chem. 2012 Nov 2;287(45):38064-72. doi: 10.1074/jbc.M112.397992. Epub 2012 Sep 13.

12.

SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism.

Zhu Q, Dugardeyn J, Zhang C, Takenaka M, Kühn K, Craddock C, Smalle J, Karampelias M, Denecke J, Peters J, Gerats T, Brennicke A, Eastmond P, Meyer EH, Van Der Straeten D.

Plant J. 2012 Sep;71(5):836-49. doi: 10.1111/j.1365-313X.2012.05036.x. Epub 2012 Jun 25.

13.

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants.

Takenaka M, Zehrmann A, Verbitskiy D, Kugelmann M, Härtel B, Brennicke A.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):5104-9. doi: 10.1073/pnas.1202452109. Epub 2012 Mar 12. Erratum in: Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10606.

14.

The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana.

Zehrmann A, van der Merwe J, Verbitskiy D, Härtel B, Brennicke A, Takenaka M.

RNA Biol. 2012 Feb;9(2):155-61. doi: 10.4161/rna.18644. Epub 2012 Feb 1.

PMID:
22258224
15.

The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria.

Hammani K, des Francs-Small CC, Takenaka M, Tanz SK, Okuda K, Shikanai T, Brennicke A, Small I.

J Biol Chem. 2011 Jun 17;286(24):21361-71. doi: 10.1074/jbc.M111.230516. Epub 2011 Apr 19.

16.

PPR proteins network as site-specific RNA editing factors in plant organelles.

Zehrmann A, Verbitskiy D, Härtel B, Brennicke A, Takenaka M.

RNA Biol. 2011 Jan-Feb;8(1):67-70. Epub 2011 Jan 1.

PMID:
21289490
17.

The DYW-E-PPR protein MEF14 is required for RNA editing at site matR-1895 in mitochondria of Arabidopsis thaliana.

Verbitskiy D, Härtel B, Zehrmann A, Brennicke A, Takenaka M.

FEBS Lett. 2011 Feb 18;585(4):700-4. doi: 10.1016/j.febslet.2011.01.037. Epub 2011 Feb 1.

18.

REDIdb: an upgraded bioinformatics resource for organellar RNA editing sites.

Picardi E, Regina TM, Verbitskiy D, Brennicke A, Quagliariello C.

Mitochondrion. 2011 Mar;11(2):360-5. doi: 10.1016/j.mito.2010.10.005. Epub 2010 Nov 6.

PMID:
21059409
19.

RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain.

Zehrmann A, Verbitskiy D, Härtel B, Brennicke A, Takenaka M.

FEBS Lett. 2010 Oct 8;584(19):4181-6. doi: 10.1016/j.febslet.2010.08.049. Epub 2010 Sep 7.

20.

Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Takenaka M, Verbitskiy D, Zehrmann A, Brennicke A.

J Biol Chem. 2010 Aug 27;285(35):27122-9. doi: 10.1074/jbc.M110.128611. Epub 2010 Jun 21.

21.

A truncated MEF11 protein shows site-specific effects on mitochondrial RNA editing.

Verbitskiy D, Zehrmann A, Brennicke A, Takenaka M.

Plant Signal Behav. 2010 May;5(5):558-60. doi: 10.4161/psb.11095. Epub 2010 May 1.

PMID:
20436293
22.

The long and winding road to RNA editing in plant mitochondria: the Tübingen-Berlin chapter.

Brennicke A.

IUBMB Life. 2009 Dec;61(12):1105-9. doi: 10.1002/iub.269. Review.

23.

A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis.

Richter U, Kühn K, Okada S, Brennicke A, Weihe A, Börner T.

Plant J. 2010 Feb;61(4):558-69. doi: 10.1111/j.1365-313X.2009.04079.x. Epub 2009 Nov 19.

24.

The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana.

Verbitskiy D, Zehrmann A, van der Merwe JA, Brennicke A, Takenaka M.

Plant J. 2010 Feb 1;61(3):446-55. doi: 10.1111/j.1365-313X.2009.04076.x. Epub 2009 Nov 16.

25.

A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana.

Zehrmann A, Verbitskiy D, van der Merwe JA, Brennicke A, Takenaka M.

Plant Cell. 2009 Feb;21(2):558-67. doi: 10.1105/tpc.108.064535. Epub 2009 Feb 27.

26.

Multiplex single-base extension typing to identify nuclear genes required for RNA editing in plant organelles.

Takenaka M, Brennicke A.

Nucleic Acids Res. 2009 Feb;37(2):e13. doi: 10.1093/nar/gkn975. Epub 2008 Dec 5.

27.

Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana.

Zehrmann A, van der Merwe JA, Verbitskiy D, Brennicke A, Takenaka M.

Mitochondrion. 2008 Sep;8(4):319-27. doi: 10.1016/j.mito.2008.07.003. Epub 2008 Jul 17.

PMID:
18678284
28.

Multiple specificity recognition motifs enhance plant mitochondrial RNA editing in vitro.

Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A, Takenaka M.

J Biol Chem. 2008 Sep 5;283(36):24374-81. doi: 10.1074/jbc.M803292200. Epub 2008 Jul 1.

29.

The process of RNA editing in plant mitochondria.

Takenaka M, Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A.

Mitochondrion. 2008 Jan;8(1):35-46. Review.

PMID:
18326075
30.

RNA editing in plant mitochondria: assays and biochemical approaches.

Takenaka M, Brennicke A.

Methods Enzymol. 2007;424:439-58.

PMID:
17662853
31.

In vitro RNA editing in plant mitochondria does not require added energy.

Takenaka M, Verbitskiy D, van der Merwe JA, Zehrmann A, Plessmann U, Urlaub H, Brennicke A.

FEBS Lett. 2007 Jun 12;581(14):2743-7. Epub 2007 May 21.

32.

Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system.

Yamato KT, Ishizaki K, Fujisawa M, Okada S, Nakayama S, Fujishita M, Bando H, Yodoya K, Hayashi K, Bando T, Hasumi A, Nishio T, Sakata R, Yamamoto M, Yamaki A, Kajikawa M, Yamano T, Nishide T, Choi SH, Shimizu-Ueda Y, Hanajiri T, Sakaida M, Kono K, Takenaka M, Yamaoka S, Kuriyama C, Kohzu Y, Nishida H, Brennicke A, Shin-i T, Kohara Y, Kohchi T, Fukuzawa H, Ohyama K.

Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6472-7. Epub 2007 Mar 29.

33.

REDIdb: the RNA editing database.

Picardi E, Regina TM, Brennicke A, Quagliariello C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D173-7. Epub 2006 Dec 14.

34.

Partially edited RNAs are intermediates of RNA editing in plant mitochondria.

Verbitskiy D, Takenaka M, Neuwirt J, van der Merwe JA, Brennicke A.

Plant J. 2006 Aug;47(3):408-16. Epub 2006 Jun 15.

35.

Transcript levels in plant mitochondria show a tight homeostasis during day and night.

Okada S, Brennicke A.

Mol Genet Genomics. 2006 Jul;276(1):71-8. Epub 2006 Apr 14.

PMID:
16614813
36.

RNA editing sites in plant mitochondria can share cis-elements.

van der Merwe JA, Takenaka M, Neuwirt J, Verbitskiy D, Brennicke A.

FEBS Lett. 2006 Jan 9;580(1):268-72. Epub 2005 Dec 13.

37.

[Analysis of RNA editing mechanism in plant mitochondria].

Takenaka M, Brennicke A.

Tanpakushitsu Kakusan Koso. 2005 Nov;50(14 Suppl):1792-4. Review. Japanese. No abstract available.

PMID:
16318318
38.

An in vitro RNA editing system from cauliflower mitochondria: editing site recognition parameters can vary in different plant species.

Neuwirt J, Takenaka M, van der Merwe JA, Brennicke A.

RNA. 2005 Oct;11(10):1563-70. Epub 2005 Aug 30.

39.

Gamma carbonic anhydrases in plant mitochondria.

Parisi G, Perales M, Fornasari MS, Colaneri A, González-Schain N, Gómez-Casati D, Zimmermann S, Brennicke A, Araya A, Ferry JG, Echave J, Zabaleta E.

Plant Mol Biol. 2004 May;55(2):193-207.

PMID:
15604675
40.

Complex cis-elements determine an RNA editing site in pea mitochondria.

Takenaka M, Neuwirt J, Brennicke A.

Nucleic Acids Res. 2004 Aug 4;32(14):4137-44. Print 2004.

41.

Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light.

Michalecka AM, Svensson AS, Johansson FI, Agius SC, Johanson U, Brennicke A, Binder S, Rasmusson AG.

Plant Physiol. 2003 Oct;133(2):642-52. Epub 2003 Aug 14.

42.

In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helicase.

Takenaka M, Brennicke A.

J Biol Chem. 2003 Nov 28;278(48):47526-33. Epub 2003 Sep 10.

43.

Gene expression in plant mitochondria: transcriptional and post-transcriptional control.

Binder S, Brennicke A.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):181-8; discussion 188-9. Review.

44.

The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene.

Okada S, Sone T, Fujisawa M, Nakayama S, Takenaka M, Ishizaki K, Kono K, Shimizu-Ueda Y, Hanajiri T, Yamato KT, Fukuzawa H, Brennicke A, Ohyama K.

Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9454-9.

45.

The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis.

Lohrmann J, Sweere U, Zabaleta E, Bäurle I, Keitel C, Kozma-Bognar L, Brennicke A, Schäfer E, Kudla J, Harter K.

Mol Genet Genomics. 2001 Mar;265(1):2-13.

PMID:
11370868
46.

From gene to protein in higher plant mitochondria.

Giegé P, Brennicke A.

C R Acad Sci III. 2001 Mar;324(3):209-17. Review.

PMID:
11291307
47.

RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria.

Giegé P, Hoffmann M, Binder S, Brennicke A.

EMBO Rep. 2000 Aug;1(2):164-70.

48.
49.

Construction of male and female PAC genomic libraries suitable for identification of Y-chromosome-specific clones from the liverwort, Marchantia polymorpha.

Okada S, Fujisawa M, Sone T, Nakayama S, Nishiyama R, Takenaka M, Yamaoka S, Sakaida M, Kono K, Takahama M, Yamato KT, Fukuzawa H, Brennicke A, Ohyama K.

Plant J. 2000 Nov;24(3):421-8.

50.

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Giegé P, Brennicke A.

Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):15324-9.

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