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Items: 1 to 50 of 86

1.

Evaluating the Performance of Micro-Encapsulated CO2 Sorbents during CO2 Absorption and Regeneration Cycling.

Knipe JM, Chavez KP, Hornbostel KM, Worthington MA, Nguyen DT, Ye C, Bourcier WL, Baker SE, Brennecke JF, Stolaroff JK.

Environ Sci Technol. 2019 Mar 5;53(5):2926-2936. doi: 10.1021/acs.est.8b06442. Epub 2019 Feb 20.

PMID:
30758198
2.

Characterization of Aqueous 1-Ethyl-3-Methylimidazolium Ionic Liquids for Calculation of Ion Dissociation.

Nordness O, Simoni LD, Stadtherr MA, Brennecke JF.

J Phys Chem B. 2019 Feb 14;123(6):1348-1358. doi: 10.1021/acs.jpcb.8b11892. Epub 2019 Jan 30.

PMID:
30645124
3.

Quantifying Asymmetry of Multimeric Proteins.

Brennecke JT, de Groot BL.

J Phys Chem A. 2018 Oct 4;122(39):7924-7930. doi: 10.1021/acs.jpca.8b06843. Epub 2018 Sep 19.

PMID:
30189732
4.

Mechanism of Mechanosensitive Gating of the TREK-2 Potassium Channel.

Brennecke JT, de Groot BL.

Biophys J. 2018 Mar 27;114(6):1336-1343. doi: 10.1016/j.bpj.2018.01.030.

5.

Encapsulation of Ionic Liquids with an Aprotic Heterocyclic Anion (AHA-IL) for CO2 Capture: Preserving the Favorable Thermodynamics and Enhancing the Kinetics of Absorption.

Moya C, Alonso-Morales N, de Riva J, Morales-Collazo O, Brennecke JF, Palomar J.

J Phys Chem B. 2018 Mar 8;122(9):2616-2626. doi: 10.1021/acs.jpcb.7b12137. Epub 2018 Feb 28.

PMID:
29443524
6.

A heterochromatin-dependent transcription machinery drives piRNA expression.

Andersen PR, Tirian L, Vunjak M, Brennecke J.

Nature. 2017 Sep 7;549(7670):54-59. doi: 10.1038/nature23482. Epub 2017 Aug 23.

7.

High-yield extraction of Escherichia coli RNA from human whole blood.

Brennecke J, Kraut S, Zwadlo K, Gandi SK, Pritchard D, Templeton K, Bachmann T.

J Med Microbiol. 2017 Mar;66(3):301-311. doi: 10.1099/jmm.0.000439. Epub 2017 Mar 20.

8.

Genetic and mechanistic diversity of piRNA 3'-end formation.

Hayashi R, Schnabl J, Handler D, Mohn F, Ameres SL, Brennecke J.

Nature. 2016 Nov 24;539(7630):588-592. doi: 10.1038/nature20162. Epub 2016 Nov 16.

9.

Liquid Structure of CO2-Reactive Aprotic Heterocyclic Anion Ionic Liquids from X-ray Scattering and Molecular Dynamics.

Sheridan QR, Oh S, Morales-Collazo O, Castner EW Jr, Brennecke JF, Maginn EJ.

J Phys Chem B. 2016 Nov 23;120(46):11951-11960. Epub 2016 Nov 10.

PMID:
27783512
10.

An Atomistic View of Amyloidogenic Self-assembly: Structure and Dynamics of Heterogeneous Conformational States in the Pre-nucleation Phase.

Matthes D, Gapsys V, Brennecke JT, de Groot BL.

Sci Rep. 2016 Sep 12;6:33156. doi: 10.1038/srep33156.

11.
12.

Solubility of CO2 in [1-n-butylthiolanium][Tf2N]+toluene mixtures: liquid-liquid phase split separation and modelling.

Canales RI, Lubben MJ, Gonzalez-Miquel M, Brennecke JF.

Philos Trans A Math Phys Eng Sci. 2015 Dec 28;373(2057). pii: 20150011. doi: 10.1098/rsta.2015.0011.

PMID:
26574531
13.

CO2 Chemistry of Phenolate-Based Ionic Liquids.

Lee TB, Oh S, Gohndrone TR, Morales-Collazo O, Seo S, Brennecke JF, Schneider WF.

J Phys Chem B. 2016 Mar 3;120(8):1509-17. doi: 10.1021/acs.jpcb.5b06934. Epub 2015 Nov 25.

PMID:
26556283
14.

Effect of Structure on Transport Properties (Viscosity, Ionic Conductivity, and Self-Diffusion Coefficient) of Aprotic Heterocyclic Anion (AHA) Room-Temperature Ionic Liquids. 1. Variation of Anionic Species.

Sun L, Morales-Collazo O, Xia H, Brennecke JF.

J Phys Chem B. 2015 Dec 3;119(48):15030-9. doi: 10.1021/acs.jpcb.5b09175. Epub 2015 Nov 18.

PMID:
26505641
15.

Silencio/CG9754 connects the Piwi-piRNA complex to the cellular heterochromatin machinery.

Sienski G, Batki J, Senti KA, Dönertas D, Tirian L, Meixner K, Brennecke J.

Genes Dev. 2015 Nov 1;29(21):2258-71. doi: 10.1101/gad.271908.115. Epub 2015 Oct 22.

16.

piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire.

Senti KA, Jurczak D, Sachidanandam R, Brennecke J.

Genes Dev. 2015 Aug 15;29(16):1747-62. doi: 10.1101/gad.267252.115.

17.

Effect of Cation on Physical Properties and CO2 Solubility for Phosphonium-Based Ionic Liquids with 2-Cyanopyrrolide Anions.

Seo S, DeSilva MA, Xia H, Brennecke JF.

J Phys Chem B. 2015 Sep 3;119(35):11807-14. doi: 10.1021/acs.jpcb.5b05733. Epub 2015 Aug 21.

PMID:
26268050
18.

Noncoding RNA. piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis.

Mohn F, Handler D, Brennecke J.

Science. 2015 May 15;348(6236):812-817. doi: 10.1126/science.aaa1039.

19.

Speciation, conductivities, diffusivities, and electrochemical reduction as a function of water content in mixtures of hydrated chromium chloride/choline chloride.

McCalman DC, Sun L, Zhang Y, Brennecke JF, Maginn EJ, Schneider WF.

J Phys Chem B. 2015 May 14;119(19):6018-23. doi: 10.1021/acs.jpcb.5b01986. Epub 2015 May 1.

PMID:
25903143
20.

Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified.

Marinov GK, Wang J, Handler D, Wold BJ, Weng Z, Hannon GJ, Aravin AA, Zamore PD, Brennecke J, Toth KF.

Dev Cell. 2015 Mar 23;32(6):765-71. doi: 10.1016/j.devcel.2015.01.013.

21.

Physical Properties and CO2 Reaction Pathway of 1-Ethyl-3-Methylimidazolium Ionic Liquids with Aprotic Heterocyclic Anions.

Seo S, DeSilva MA, Brennecke JF.

J Phys Chem B. 2014 Dec 26;118(51):14870-9. doi: 10.1021/jp509583c. Epub 2014 Dec 11.

PMID:
25431974
22.

Excess enthalpy of monoethanolamine + ionic liquid mixtures: how good are COSMO-RS predictions?

Gonzalez-Miquel M, Massel M, DeSilva A, Palomar J, Rodriguez F, Brennecke JF.

J Phys Chem B. 2014 Oct 2;118(39):11512-22. doi: 10.1021/jp507547q. Epub 2014 Sep 23.

PMID:
25198918
23.

The exon junction complex is required for definition and excision of neighboring introns in Drosophila.

Hayashi R, Handler D, Ish-Horowicz D, Brennecke J.

Genes Dev. 2014 Aug 15;28(16):1772-85. doi: 10.1101/gad.245738.114. Epub 2014 Jul 31.

24.

The rhino-deadlock-cutoff complex licenses noncanonical transcription of dual-strand piRNA clusters in Drosophila.

Mohn F, Sienski G, Handler D, Brennecke J.

Cell. 2014 Jun 5;157(6):1364-79. doi: 10.1016/j.cell.2014.04.031.

25.

Switching the reaction course of electrochemical CO₂ reduction with ionic liquids.

Sun L, Ramesha GK, Kamat PV, Brennecke JF.

Langmuir. 2014 Jun 3;30(21):6302-8. doi: 10.1021/la5009076. Epub 2014 May 22.

PMID:
24851903
26.

Refined method for predicting electrochemical windows of ionic liquids and experimental validation studies.

Zhang Y, Shi C, Brennecke JF, Maginn EJ.

J Phys Chem B. 2014 Jun 12;118(23):6250-5. doi: 10.1021/jp5034257. Epub 2014 May 30.

PMID:
24823869
27.

Chemically tunable ionic liquids with aprotic heterocyclic anion (AHA) for CO(2) capture.

Seo S, Quiroz-Guzman M, DeSilva MA, Lee TB, Huang Y, Goodrich BF, Schneider WF, Brennecke JF.

J Phys Chem B. 2014 May 29;118(21):5740-51. doi: 10.1021/jp502279w. Epub 2014 May 19.

PMID:
24811264
28.

Competing reactions of CO2 with cations and anions in azolide ionic liquids.

Gohndrone TR, Bum Lee T, DeSilva MA, Quiroz-Guzman M, Schneider WF, Brennecke JF.

ChemSusChem. 2014 Jul;7(7):1970-5. doi: 10.1002/cssc.201400009. Epub 2014 May 6.

PMID:
24801593
29.

Drosophila Gtsf1 is an essential component of the Piwi-mediated transcriptional silencing complex.

Dönertas D, Sienski G, Brennecke J.

Genes Dev. 2013 Aug 1;27(15):1693-705. doi: 10.1101/gad.221150.113.

30.

Solid-state covalent capture of CO2 by using N-heterocyclic carbenes.

Vogt M, Bennett JE, Huang Y, Wu C, Schneider WF, Brennecke JF, Ashfeld BL.

Chemistry. 2013 Aug 19;19(34):11134-8. doi: 10.1002/chem.201302013. Epub 2013 Jul 26.

PMID:
23893356
31.

The genetic makeup of the Drosophila piRNA pathway.

Handler D, Meixner K, Pizka M, Lauss K, Schmied C, Gruber FS, Brennecke J.

Mol Cell. 2013 Jun 6;50(5):762-77. doi: 10.1016/j.molcel.2013.04.031. Epub 2013 May 9.

32.

Reaction kinetics of CO2 absorption in to phosphonium based anion-functionalized ionic liquids.

Gurkan BE, Gohndrone TR, McCready MJ, Brennecke JF.

Phys Chem Chem Phys. 2013 May 28;15(20):7796-811. doi: 10.1039/c3cp51289d. Epub 2013 Apr 19.

PMID:
23598368
33.

Directed nucleation of monomeric and dimeric uranium(VI) complexes with a room temperature carboxyl-functionalized phosphonium ionic liquid.

Chen XY, Goff GS, Quiroz-Guzman M, Fagnant DP Jr, Brennecke JF, Scott BL, Runde W.

Chem Commun (Camb). 2013 Mar 7;49(19):1903-5. doi: 10.1039/c2cc38255e. Epub 2013 Jan 8.

PMID:
23296265
34.

Switchable phase behavior of [HBet][Tf2N]-H2O upon neodymium loading: implications for lanthanide separations.

Fagnant DP Jr, Goff GS, Scott BL, Runde W, Brennecke JF.

Inorg Chem. 2013 Jan 18;52(2):549-51. doi: 10.1021/ic302359d. Epub 2013 Jan 4.

PMID:
23289843
35.

Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression.

Sienski G, Dönertas D, Brennecke J.

Cell. 2012 Nov 21;151(5):964-80. doi: 10.1016/j.cell.2012.10.040. Epub 2012 Nov 15.

36.

Preparation of small RNA libraries for high-throughput sequencing.

Malone C, Brennecke J, Czech B, Aravin A, Hannon GJ.

Cold Spring Harb Protoc. 2012 Oct 1;2012(10):1067-77. doi: 10.1101/pdb.prot071431.

PMID:
23028068
37.

Bezafibrate for X-linked adrenoleukodystrophy.

Engelen M, Tran L, Ofman R, Brennecke J, Moser AB, Dijkstra IM, Wanders RJ, Poll-The BT, Kemp S.

PLoS One. 2012;7(7):e41013. doi: 10.1371/journal.pone.0041013. Epub 2012 Jul 20.

38.

The cochaperone shutdown defines a group of biogenesis factors essential for all piRNA populations in Drosophila.

Olivieri D, Senti KA, Subramanian S, Sachidanandam R, Brennecke J.

Mol Cell. 2012 Sep 28;47(6):954-69. doi: 10.1016/j.molcel.2012.07.021. Epub 2012 Aug 16.

39.

A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.

Handler D, Olivieri D, Novatchkova M, Gruber FS, Meixner K, Mechtler K, Stark A, Sachidanandam R, Brennecke J.

EMBO J. 2011 Aug 23;30(19):3977-93. doi: 10.1038/emboj.2011.308.

40.

Effect of water and temperature on absorption of CO2 by amine-functionalized anion-tethered ionic liquids.

Goodrich BF, de la Fuente JC, Gurkan BE, Lopez ZK, Price EA, Huang Y, Brennecke JF.

J Phys Chem B. 2011 Jul 28;115(29):9140-50. doi: 10.1021/jp2015534. Epub 2011 Jun 29.

PMID:
21650466
41.

A genome-scale shRNA resource for transgenic RNAi in Drosophila.

Ni JQ, Zhou R, Czech B, Liu LP, Holderbaum L, Yang-Zhou D, Shim HS, Tao R, Handler D, Karpowicz P, Binari R, Booker M, Brennecke J, Perkins LA, Hannon GJ, Perrimon N.

Nat Methods. 2011 May;8(5):405-7. doi: 10.1038/nmeth.1592. Epub 2011 Apr 3.

42.

The piRNA pathway: a fly's perspective on the guardian of the genome.

Senti KA, Brennecke J.

Trends Genet. 2010 Dec;26(12):499-509. doi: 10.1016/j.tig.2010.08.007. Review.

43.

An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila.

Olivieri D, Sykora MM, Sachidanandam R, Mechtler K, Brennecke J.

EMBO J. 2010 Oct 6;29(19):3301-17. doi: 10.1038/emboj.2010.212. Epub 2010 Sep 3.

44.

Interactions of ionic liquids and water.

Ficke LE, Brennecke JF.

J Phys Chem B. 2010 Aug 19;114(32):10496-501. doi: 10.1021/jp1012736.

PMID:
20701381
45.

Equimolar CO(2) absorption by anion-functionalized ionic liquids.

Gurkan BE, de la Fuente JC, Mindrup EM, Ficke LE, Goodrich BF, Price EA, Schneider WF, Brennecke JF.

J Am Chem Soc. 2010 Feb 24;132(7):2116-7. doi: 10.1021/ja909305t.

PMID:
20121150
46.

Hierarchical rules for Argonaute loading in Drosophila.

Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ.

Mol Cell. 2009 Nov 13;36(3):445-56. doi: 10.1016/j.molcel.2009.09.028.

47.

Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform.

Zhou R, Czech B, Brennecke J, Sachidanandam R, Wohlschlegel JA, Perrimon N, Hannon GJ.

RNA. 2009 Oct;15(10):1886-95. doi: 10.1261/rna.1611309. Epub 2009 Jul 27.

48.

Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, Sachidanandam R, Hannon GJ.

Cell. 2009 May 1;137(3):522-35. doi: 10.1016/j.cell.2009.03.040. Epub 2009 Apr 23.

49.

Influence of water on diffusion in imidazolium-based ionic liquids: a pulsed field gradient NMR study.

Menjoge A, Dixon J, Brennecke JF, Maginn EJ, Vasenkov S.

J Phys Chem B. 2009 May 7;113(18):6353-9. doi: 10.1021/jp900902n.

PMID:
19361225
50.

An epigenetic role for maternally inherited piRNAs in transposon silencing.

Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ.

Science. 2008 Nov 28;322(5906):1387-92. doi: 10.1126/science.1165171.

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