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Best matches for Brejová B[au]:

Isometric gene tree reconciliation revisited. Brejová B et al. Algorithms Mol Biol. (2017)

The genome of the hydatid tapeworm Echinococcus granulosus. Zheng H et al. Nat Genet. (2013)

Draft Genome Sequence of an Obligate Psychrophilic Yeast, <i>Candida psychrophila</i> NRRL Y-17665<sup>T</sup>. Brejová B et al. Genome Announc. (2017)

Search results

Items: 27

1.

SWSPM: A Novel Alignment-Free DNA Comparison Method Based on Signal Processing Approaches.

Farkaš T, Sitarčík J, Brejová B, Lucká M.

Evol Bioinform Online. 2019 May 30;15:1176934319849071. doi: 10.1177/1176934319849071. eCollection 2019.

2.

Genome Sequence of an Arthroconidial Yeast, Saprochaete fungicola CBS 625.85.

Brejová B, Lichancová H, Hodorová V, Neboháčová M, Tomáška Ľ, Vinař T, Nosek J.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00092-19. doi: 10.1128/MRA.00092-19.

3.

Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571.

Lichancová H, Hodorová V, Sienkiewicz K, Penir SMU, Afanasyev P, Boceck D, Bonnin S, Hakobyan S, Krawczyk PS, Smyczynska U, Zhivkoplias E, Zlatohurska M, Odrzywolski A, Tralle E, Frolova A, Pryszcz LP, Brejová B, Vinař T, Nosek J.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00094-19. doi: 10.1128/MRA.00094-19. eCollection 2019 Feb.

4.

Genome sequence of the opportunistic human pathogen Magnusiomyces capitatus.

Brejová B, Lichancová H, Brázdovič F, Hegedűsová E, Forgáčová Jakúbková M, Hodorová V, Džugasová V, Baláž A, Zeiselová L, Cillingová A, Neboháčová M, Raclavský V, Tomáška Ľ, Lang BF, Vinař T, Nosek J.

Curr Genet. 2019 Apr;65(2):539-560. doi: 10.1007/s00294-018-0904-y. Epub 2018 Nov 19.

PMID:
30456648
5.

Dante: genotyping of known complex and expanded short tandem repeats.

Budiš J, Kucharík M, Ďuriš F, Gazdarica J, Zrubcová M, Ficek A, Szemes T, Brejová B, Radvanszky J.

Bioinformatics. 2019 Apr 15;35(8):1310-1317. doi: 10.1093/bioinformatics/bty791.

PMID:
30203023
6.

Draft Genome Sequence of an Obligate Psychrophilic Yeast, Candida psychrophila NRRL Y-17665T.

Brejová B, Lichancová H, Brázdovič F, Cillingová A, Neboháčová M, Tomáška Ľ, Vinař T, Nosek J.

Genome Announc. 2017 Aug 31;5(35). pii: e00851-17. doi: 10.1128/genomeA.00851-17.

7.

Isometric gene tree reconciliation revisited.

Brejová B, Gafurov A, Pardubská D, Sabo M, Vinař T.

Algorithms Mol Biol. 2017 Jun 13;12:17. doi: 10.1186/s13015-017-0108-x. eCollection 2017.

8.

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads.

Boža V, Brejová B, Vinař T.

PLoS One. 2017 Jun 5;12(6):e0178751. doi: 10.1371/journal.pone.0178751. eCollection 2017.

9.

RNA motif search with data-driven element ordering.

Rampášek L, Jimenez RM, Lupták A, Vinař T, Brejová B.

BMC Bioinformatics. 2016 May 18;17(1):216. doi: 10.1186/s12859-016-1074-x.

10.

GAML: genome assembly by maximum likelihood.

Boža V, Brejová B, Vinař T.

Algorithms Mol Biol. 2015 Jun 3;10:18. doi: 10.1186/s13015-015-0052-6. eCollection 2015.

11.

Fast computation of a string duplication history under no-breakpoint-reuse.

Brejová B, Kravec M, Landau GM, Vinař T.

Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130133. doi: 10.1098/rsta.2013.0133. Print 2014 May 28.

12.

Massive programmed translational jumping in mitochondria.

Lang BF, Jakubkova M, Hegedusova E, Daoud R, Forget L, Brejova B, Vinar T, Kosa P, Fricova D, Nebohacova M, Griac P, Tomaska L, Burger G, Nosek J.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5926-31. doi: 10.1073/pnas.1322190111. Epub 2014 Apr 7.

13.

Probabilistic approaches to alignment with tandem repeats.

Nánási M, Vinař T, Brejová B.

Algorithms Mol Biol. 2014 Mar 1;9(1):3. doi: 10.1186/1748-7188-9-3.

14.

Mitochondrial genome of the basidiomycetous yeast Jaminaea angkorensis.

Hegedusova E, Brejova B, Tomaska L, Sipiczki M, Nosek J.

Curr Genet. 2014 Feb;60(1):49-59. doi: 10.1007/s00294-013-0410-1. Epub 2013 Sep 27.

PMID:
24071901
15.

The genome of the hydatid tapeworm Echinococcus granulosus.

Zheng H, Zhang W, Zhang L, Zhang Z, Li J, Lu G, Zhu Y, Wang Y, Huang Y, Liu J, Kang H, Chen J, Wang L, Chen A, Yu S, Gao Z, Jin L, Gu W, Wang Z, Zhao L, Shi B, Wen H, Lin R, Jones MK, Brejova B, Vinar T, Zhao G, McManus DP, Chen Z, Zhou Y, Wang S.

Nat Genet. 2013 Oct;45(10):1168-75. doi: 10.1038/ng.2757. Epub 2013 Sep 8.

PMID:
24013640
16.

Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.

Zhu S, Cao YZ, Jiang C, Tan BY, Wang Z, Feng S, Zhang L, Su XH, Brejova B, Vinar T, Xu M, Wang MX, Zhang SG, Huang MR, Wu R, Zhou Y.

BMC Genomics. 2012 Aug 9;13:382. doi: 10.1186/1471-2164-13-382.

17.

Discovery of RNA motifs using a computational pipeline that allows insertions in paired regions and filtering of candidate sequences.

Jimenez RM, Rampášek L, Brejová B, Vinař T, Lupták A.

Methods Mol Biol. 2012;848:145-58. doi: 10.1007/978-1-61779-545-9_10.

PMID:
22315068
18.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

19.

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria.

Valach M, Farkas Z, Fricova D, Kovac J, Brejova B, Vinar T, Pfeiffer I, Kucsera J, Tomaska L, Lang BF, Nosek J.

Nucleic Acids Res. 2011 May;39(10):4202-19. doi: 10.1093/nar/gkq1345. Epub 2011 Jan 25.

20.

Reconstructing histories of complex gene clusters on a phylogeny.

Vinar T, Brejová B, Song G, Siepel A.

J Comput Biol. 2010 Sep;17(9):1267-79. doi: 10.1089/cmb.2010.0090.

PMID:
20874408
21.

A possible role for short introns in the acquisition of stroma-targeting peptides in the flagellate Euglena gracilis.

Vesteg M, Vacula R, Steiner JM, Mateásiková B, Löffelhardt W, Brejová B, Krajcovic J.

DNA Res. 2010 Aug;17(4):223-31. doi: 10.1093/dnares/dsq015. Epub 2010 Jun 29.

22.

The completion of the Mammalian Gene Collection (MGC).

MGC Project Team, Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH, Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Hartigan J, Graf M, Wagner R, Letovksy S, Pulido JC, Robison K, Esposito D, Hartley J, Wall VE, Hopkins RF, Ohara O, Wiemann S.

Genome Res. 2009 Dec;19(12):2324-33. doi: 10.1101/gr.095976.109. Epub 2009 Sep 18.

23.

Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence.

Brejová B, Vinar T, Chen Y, Wang S, Zhao G, Brown DG, Li M, Zhou Y.

Nucleic Acids Res. 2009 Apr;37(7):e52. doi: 10.1093/nar/gkp052. Epub 2009 Mar 5.

24.

Targeted discovery of novel human exons by comparative genomics.

Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S, Lau C, Yu HC, Li J, Roe BA, Green P, Gerhard DS, Temple G, Haussler D, Brent MR.

Genome Res. 2007 Dec;17(12):1763-73. Epub 2007 Nov 7.

25.

Homology search for genes.

Cui X, Vinar T, Brejová B, Shasha D, Li M.

Bioinformatics. 2007 Jul 1;23(13):i97-103.

PMID:
17646351
26.

ExonHunter: a comprehensive approach to gene finding.

Brejová B, Brown DG, Li M, Vinar T.

Bioinformatics. 2005 Jun;21 Suppl 1:i57-65.

PMID:
15961499
27.

Optimal spaced seeds for homologous coding regions.

Brejová B, Brown DG, Vinar T.

J Bioinform Comput Biol. 2004 Jan;1(4):595-610.

PMID:
15290755

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