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Prevalence of a vertically transmitted single-stranded DNA virus in spinybacked orbweavers (Gasteracantha cancriformis) from Florida, USA.

Rosario K, Mettel KA, Greco AM, Breitbart M.

J Gen Virol. 2019 Aug;100(8):1253-1265. doi: 10.1099/jgv.0.001293. Epub 2019 Jun 18.


Pepper mild mottle virus: Agricultural menace turned effective tool for microbial water quality monitoring and assessing (waste)water treatment technologies.

Symonds EM, Rosario K, Breitbart M.

PLoS Pathog. 2019 Apr 18;15(4):e1007639. doi: 10.1371/journal.ppat.1007639. eCollection 2019 Apr. No abstract available.


Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding.

Sawaya NA, Djurhuus A, Closek CJ, Hepner M, Olesin E, Visser L, Kelble C, Hubbard K, Breitbart M.

Ecol Evol. 2019 Jan 15;9(3):1029-1040. doi: 10.1002/ece3.4742. eCollection 2019 Feb.


Eukaryotic Circular Rep-Encoding Single-Stranded DNA (CRESS DNA) Viruses: Ubiquitous Viruses With Small Genomes and a Diverse Host Range.

Zhao L, Rosario K, Breitbart M, Duffy S.

Adv Virus Res. 2019;103:71-133. doi: 10.1016/bs.aivir.2018.10.001. Epub 2018 Dec 5. Review.


Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.


Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates.

Rosario K, Mettel KA, Benner BE, Johnson R, Scott C, Yusseff-Vanegas SZ, Baker CCM, Cassill DL, Storer C, Varsani A, Breitbart M.

PeerJ. 2018 Oct 11;6:e5761. doi: 10.7717/peerj.5761. eCollection 2018.


Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta).

Creasy A, Rosario K, Leigh BA, Dishaw LJ, Breitbart M.

Viruses. 2018 Jul 31;10(8). pii: E404. doi: 10.3390/v10080404.


Pepper mild mottle virus: A plant pathogen with a greater purpose in (waste)water treatment development and public health management.

Symonds EM, Nguyen KH, Harwood VJ, Breitbart M.

Water Res. 2018 Nov 1;144:1-12. doi: 10.1016/j.watres.2018.06.066. Epub 2018 Jun 30. Review.


Evaluation of marine zooplankton community structure through environmental DNA metabarcoding.

Djurhuus A, Pitz K, Sawaya NA, Rojas-Márquez J, Michaud B, Montes E, Muller-Karger F, Breitbart M.

Limnol Oceanogr Methods. 2018 Apr;16(4):209-221. doi: 10.1002/lom3.10237. Epub 2018 Jan 17.


Elementary Student Outreach Activity Demonstrating the Use of Phage Therapy Heroes to Combat Bacterial Infections.

Breitbart M, Malki K, Sawaya NA, Bonnain C, Martin MO.

J Microbiol Biol Educ. 2018 Mar 30;19(1). pii: 19.1.30. doi: 10.1128/jmbe.v19i1.1407. eCollection 2018. No abstract available.


Phage puppet masters of the marine microbial realm.

Breitbart M, Bonnain C, Malki K, Sawaya NA.

Nat Microbiol. 2018 Jul;3(7):754-766. doi: 10.1038/s41564-018-0166-y. Epub 2018 Jun 4. Review.


Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta.

Leigh BA, Breitbart M, Oksanen HM, Bamford DH, Dishaw LJ.

Genome Announc. 2018 May 24;6(21). pii: e00368-18. doi: 10.1128/genomeA.00368-18.


Discovery of Four Novel Circular Single-Stranded DNA Viruses in Fungus-Farming Termites.

Kerr M, Rosario K, Baker CCM, Breitbart M.

Genome Announc. 2018 Apr 26;6(17). pii: e00318-18. doi: 10.1128/genomeA.00318-18.


Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air.

Rosario K, Fierer N, Breitbart M.

Genome Announc. 2018 Mar 22;6(12). pii: e00198-18. doi: 10.1128/genomeA.00198-18.


Genomic evolution, recombination, and inter-strain diversity of chelonid alphaherpesvirus 5 from Florida and Hawaii green sea turtles with fibropapillomatosis.

Morrison CL, Iwanowicz L, Work TM, Fahsbender E, Breitbart M, Adams C, Iwanowicz D, Sanders L, Ackermann M, Cornman RS.

PeerJ. 2018 Feb 20;6:e4386. doi: 10.7717/peerj.4386. eCollection 2018.


Zoonotic Infection With Pigeon Paramyxovirus Type 1 Linked to Fatal Pneumonia.

Kuiken T, Breitbart M, Beer M, Grund C, Höper D, van den Hoogen B, Kerkhoffs JH, Kroes ACM, Rosario K, van Run P, Schwarz M, Svraka S, Teifke J, Koopmans M.

J Infect Dis. 2018 Aug 24;218(7):1037-1044. doi: 10.1093/infdis/jiy036.


Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing.

Rosario K, Fierer N, Miller S, Luongo J, Breitbart M.

Environ Sci Technol. 2018 Feb 6;52(3):1014-1027. doi: 10.1021/acs.est.7b04203. Epub 2018 Jan 23.


The gut virome of the protochordate model organism, Ciona intestinalis subtype A.

Leigh BA, Djurhuus A, Breitbart M, Dishaw LJ.

Virus Res. 2018 Jan 15;244:137-146. doi: 10.1016/j.virusres.2017.11.015. Epub 2017 Nov 15.


ICTV Virus Taxonomy Profile: Circoviridae.

Breitbart M, Delwart E, Rosario K, Segalés J, Varsani A, Ictv Report Consortium.

J Gen Virol. 2017 Aug;98(8):1997-1998. doi: 10.1099/jgv.0.000871. Epub 2017 Aug 8.


Diverse and highly recombinant anelloviruses associated with Weddell seals in Antarctica.

Fahsbender E, Burns JM, Kim S, Kraberger S, Frankfurter G, Eilers AA, Shero MR, Beltran R, Kirkham A, McCorkell R, Berngartt RK, Male MF, Ballard G, Ainley DG, Breitbart M, Varsani A.

Virus Evol. 2017 Jul 19;3(1):vex017. doi: 10.1093/ve/vex017. eCollection 2017 Jan.


Variability and host density independence in inductions-based estimates of environmental lysogeny.

Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, Rohwer F.

Nat Microbiol. 2017 Apr 28;2:17064. doi: 10.1038/nmicrobiol.2017.64.


Isolation and Characterization of a Shewanella Phage-Host System from the Gut of the Tunicate, Ciona intestinalis.

Leigh B, Karrer C, Cannon JP, Breitbart M, Dishaw LJ.

Viruses. 2017 Mar 22;9(3). pii: E60. doi: 10.3390/v9030060.


Genome Sequence of Euphorbia mosaic virus from Passionfruit and Euphorbia heterophylla in Florida.

Polston JE, Londoño MA, Cohen AL, Padilla-Rodriguez M, Rosario K, Breitbart M.

Genome Announc. 2017 Mar 2;5(9). pii: e01714-16. doi: 10.1128/genomeA.01714-16.


Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus.

Rosario K, Breitbart M, Harrach B, Segalés J, Delwart E, Biagini P, Varsani A.

Arch Virol. 2017 May;162(5):1447-1463. doi: 10.1007/s00705-017-3247-y. Epub 2017 Feb 2.


Consensus statement: Virus taxonomy in the age of metagenomics.

Simmonds P, Adams MJ, Benkő M, Breitbart M, Brister JR, Carstens EB, Davison AJ, Delwart E, Gorbalenya AE, Harrach B, Hull R, King AM, Koonin EV, Krupovic M, Kuhn JH, Lefkowitz EJ, Nibert ML, Orton R, Roossinck MJ, Sabanadzovic S, Sullivan MB, Suttle CA, Tesh RB, van der Vlugt RA, Varsani A, Zerbini FM.

Nat Rev Microbiol. 2017 Mar;15(3):161-168. doi: 10.1038/nrmicro.2016.177. Epub 2017 Jan 3.


Microbial source tracking in shellfish harvesting waters in the Gulf of Nicoya, Costa Rica.

Symonds EM, Young S, Verbyla ME, McQuaig-Ulrich SM, Ross E, Jiménez JA, Harwood VJ, Breitbart M.

Water Res. 2017 Mar 15;111:177-184. doi: 10.1016/j.watres.2017.01.004. Epub 2017 Jan 3.


Towards quantitative viromics for both double-stranded and single-stranded DNA viruses.

Roux S, Solonenko NE, Dang VT, Poulos BT, Schwenck SM, Goldsmith DB, Coleman ML, Breitbart M, Sullivan MB.

PeerJ. 2016 Dec 8;4:e2777. doi: 10.7717/peerj.2777. eCollection 2016.


Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates.

Biller SJ, McDaniel LD, Breitbart M, Rogers E, Paul JH, Chisholm SW.

ISME J. 2017 Feb;11(2):394-404. doi: 10.1038/ismej.2016.134. Epub 2016 Nov 8.


Faecal pollution along the southeastern coast of Florida and insight into the use of pepper mild mottle virus as an indicator.

Symonds EM, Sinigalliano C, Gidley M, Ahmed W, McQuaig-Ulrich SM, Breitbart M.

J Appl Microbiol. 2016 Nov;121(5):1469-1481. doi: 10.1111/jam.13252.


Managing Microbial Risks from Indirect Wastewater Reuse for Irrigation in Urbanizing Watersheds.

Verbyla ME, Symonds EM, Kafle RC, Cairns MR, Iriarte M, Mercado Guzmán A, Coronado O, Breitbart M, Ledo C, Mihelcic JR.

Environ Sci Technol. 2016 Jul 5;50(13):6803-13. doi: 10.1021/acs.est.5b05398. Epub 2016 Apr 6.


Single-stranded DNA phages: from early molecular biology tools to recent revolutions in environmental microbiology.

Székely AJ, Breitbart M.

FEMS Microbiol Lett. 2016 Mar;363(6). pii: fnw027. doi: 10.1093/femsle/fnw027. Epub 2016 Feb 5. Review.


Begomovirus-Associated Satellite DNA Diversity Captured Through Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae).

Rosario K, Marr C, Varsani A, Kraberger S, Stainton D, Moriones E, Polston JE, Breitbart M.

Viruses. 2016 Feb 2;8(2). pii: E36. doi: 10.3390/v8020036.


Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata.

Breitbart M, Benner BE, Jernigan PE, Rosario K, Birsa LM, Harbeitner RC, Fulford S, Graham C, Walters A, Goldsmith DB, Berger SA, Nejstgaard JC.

Front Microbiol. 2015 Dec 18;6:1427. doi: 10.3389/fmicb.2015.01427. eCollection 2015.


Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and Old Worlds.

Rosario K, Seah YM, Marr C, Varsani A, Kraberger S, Stainton D, Moriones E, Polston JE, Duffy S, Breitbart M.

Viruses. 2015 Oct 26;7(10):5553-70. doi: 10.3390/v7102895.


Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins.

Rosario K, Schenck RO, Harbeitner RC, Lawler SN, Breitbart M.

Front Microbiol. 2015 Jul 10;6:696. doi: 10.3389/fmicb.2015.00696. eCollection 2015.


Deep sequencing of the viral phoH gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral phoH genes in the Sargasso Sea.

Goldsmith DB, Parsons RJ, Beyene D, Salamon P, Breitbart M.

PeerJ. 2015 Jun 16;3:e997. doi: 10.7717/peerj.997. eCollection 2015.


Discovery of a novel circular DNA virus in the Forbes sea star, Asterias forbesi.

Fahsbender E, Hewson I, Rosario K, Tuttle AD, Varsani A, Breitbart M.

Arch Virol. 2015 Sep;160(9):2349-51. doi: 10.1007/s00705-015-2503-2. Epub 2015 Jun 26.


Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes.

Aziz RK, Dwivedi B, Akhter S, Breitbart M, Edwards RA.

Front Microbiol. 2015 May 8;6:381. doi: 10.3389/fmicb.2015.00381. eCollection 2015.


Development of a Serological Assay for the Sea Lion (Zalophus californianus) Anellovirus, ZcAV.

Fahsbender E, Rosario K, Cannon JP, Gulland F, Dishaw LJ, Breitbart M.

Sci Rep. 2015 May 12;5:9637. doi: 10.1038/srep09637.


Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

Adams MJ, Lefkowitz EJ, King AM, Bamford DH, Breitbart M, Davison AJ, Ghabrial SA, Gorbalenya AE, Knowles NJ, Krell P, Lavigne R, Prangishvili D, Sanfaçon H, Siddell SG, Simmonds P, Carstens EB.

Arch Virol. 2015 Jul;160(7):1837-50. doi: 10.1007/s00705-015-2425-z.


Reduction of nutrients, microbes, and personal care products in domestic wastewater by a benchtop electrocoagulation unit.

Symonds EM, Cook MM, McQuaig SM, Ulrich RM, Schenck RO, Lukasik JO, Van Vleet ES, Breitbart M.

Sci Rep. 2015 Mar 23;5:9380. doi: 10.1038/srep09380.


Densovirus associated with sea-star wasting disease and mass mortality.

Hewson I, Button JB, Gudenkauf BM, Miner B, Newton AL, Gaydos JK, Wynne J, Groves CL, Hendler G, Murray M, Fradkin S, Breitbart M, Fahsbender E, Lafferty KD, Kilpatrick AM, Miner CM, Raimondi P, Lahner L, Friedman CS, Daniels S, Haulena M, Marliave J, Burge CA, Eisenlord ME, Harvell CD.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17278-83. doi: 10.1073/pnas.1416625111. Epub 2014 Nov 17.


A case study of enteric virus removal and insights into the associated risk of water reuse for two wastewater treatment pond systems in Bolivia.

Symonds EM, Verbyla ME, Lukasik JO, Kafle RC, Breitbart M, Mihelcic JR.

Water Res. 2014 Nov 15;65:257-70. doi: 10.1016/j.watres.2014.07.032. Epub 2014 Aug 2.


Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein.

Hopkins M, Kailasan S, Cohen A, Roux S, Tucker KP, Shevenell A, Agbandje-McKenna M, Breitbart M.

ISME J. 2014 Oct;8(10):2093-103. doi: 10.1038/ismej.2014.43. Epub 2014 Apr 3.


RNA viral metagenome of whiteflies leads to the discovery and characterization of a whitefly-transmitted carlavirus in North America.

Rosario K, Capobianco H, Ng TF, Breitbart M, Polston JE.

PLoS One. 2014 Jan 21;9(1):e86748. doi: 10.1371/journal.pone.0086748. eCollection 2014.


Distinct lineage of vesiculovirus from big brown bats, United States.

Ng TF, Driscoll C, Carlos MP, Prioleau A, Schmieder R, Dwivedi B, Wong J, Cha Y, Head S, Breitbart M, Delwart E.

Emerg Infect Dis. 2013 Dec;19(12):1978-80. doi: 10.3201/eid1912.121506.


Metagenomic identification of a nodavirus and a circular ssDNA virus in semi-purified viral nucleic acids from the hepatopancreas of healthy Farfantepenaeus duorarum shrimp.

Ng TF, Alavandi S, Varsani A, Burghart S, Breitbart M.

Dis Aquat Organ. 2013 Sep 3;105(3):237-42. doi: 10.3354/dao02628.


Comparative metagenomics: natural populations of induced prophages demonstrate highly unique, lower diversity viral sequences.

McDaniel LD, Rosario K, Breitbart M, Paul JH.

Environ Microbiol. 2014 Feb;16(2):570-85. doi: 10.1111/1462-2920.12184. Epub 2013 Jul 23.


High global diversity of cycloviruses amongst dragonflies.

Dayaram A, Potter KA, Moline AB, Rosenstein DD, Marinov M, Thomas JE, Breitbart M, Rosario K, Argüello-Astorga GR, Varsani A.

J Gen Virol. 2013 Aug;94(Pt 8):1827-40. doi: 10.1099/vir.0.052654-0. Epub 2013 Apr 17.


A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes.

Dwivedi B, Xue B, Lundin D, Edwards RA, Breitbart M.

BMC Evol Biol. 2013 Feb 7;13:33. doi: 10.1186/1471-2148-13-33.

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