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Items: 29

1.

Genome Sequences of Nine Erwinia amylovora Bacteriophages.

Sharma R, Berg JA, Beatty NJ, Choi MC, Cowger AE, Cozzens BJR, Duncan SG, Fajardo CP, Ferguson HP, Galbraith T, Herring JA, Hoj TR, Durrant JL, Hyde JR, Jensen GL, Ke SY, Killpack S, Kruger JL, Lawrence EEK, Nwosu IO, Tam TC, Thompson DW, Tueller JA, Ward MEH, Webb CJ, Wood ME, Yeates EL, Baltrus DA, Breakwell DP, Hope S, Grose JH.

Microbiol Resour Announc. 2018 Oct 11;7(14). pii: e00944-18. doi: 10.1128/MRA.00944-18. eCollection 2018 Oct.

2.

Complete Genome Sequences of 18 Paenibacillus larvae Phages from the Western United States.

Merrill BD, Fajardo CP, Hilton JA, Payne AM, Ward AT, Walker JK, Dhalai A, Imahara C, Mangohig J, Monk J, Pascacio C, Rai P, Salisbury A, Velez K, Bloomfield TJ, Buhler B, Duncan SG, Fuhriman DA, George J, Graves K, Heaton K, Hill HL, Kim M, Knabe BK, Ririe DB, Rogers SL, Stamereilers C, Stephenson MB, Usher BK, Ward CS, Withers JM, Wright CK, Breakwell DP, Grose JH, Hope S, Tsourkas PK.

Microbiol Resour Announc. 2018 Oct 4;7(13). pii: e00966-18. doi: 10.1128/MRA.00966-18. eCollection 2018 Oct.

3.

A PCR-Based Method for Distinguishing between Two Common Beehive Bacteria, Paenibacillus larvae and Brevibacillus laterosporus.

Berg JA, Merrill BD, Breakwell DP, Hope S, Grose JH.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01886-18. doi: 10.1128/AEM.01886-18. Print 2018 Nov 15.

4.

Complete Genome Sequences of Paenibacillus larvae Phages BN12, Dragolir, Kiel007, Leyra, Likha, Pagassa, PBL1c, and Tadhana.

Walker JK, Merrill BD, Berg JA, Dhalai A, Dingman DW, Fajardo CP, Graves K, Hill HL, Hilton JA, Imahara C, Knabe BK, Mangohig J, Monk J, Mun H, Payne AM, Salisbury A, Stamereilers C, Velez K, Ward AT, Breakwell DP, Grose JH, Hope S, Tsourkas PK.

Genome Announc. 2018 Jun 14;6(24). pii: e01602-17. doi: 10.1128/genomeA.01602-17.

5.

Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses.

Weber KS, Bridgewater LC, Jensen JL, Breakwell DP, Nielsen BL, Johnson SM.

PLoS One. 2018 Apr 11;13(4):e0193696. doi: 10.1371/journal.pone.0193696. eCollection 2018.

6.

Genome Sequences of 19 Novel Erwinia amylovora Bacteriophages.

Esplin IND, Berg JA, Sharma R, Allen RC, Arens DK, Ashcroft CR, Bairett SR, Beatty NJ, Bickmore M, Bloomfield TJ, Brady TS, Bybee RN, Carter JL, Choi MC, Duncan S, Fajardo CP, Foy BB, Fuhriman DA, Gibby PD, Grossarth SE, Harbaugh K, Harris N, Hilton JA, Hurst E, Hyde JR, Ingersoll K, Jacobson CM, James BD, Jarvis TM, Jaen-Anieves D, Jensen GL, Knabe BK, Kruger JL, Merrill BD, Pape JA, Payne Anderson AM, Payne DE, Peck MD, Pollock SV, Putnam MJ, Ransom EK, Ririe DB, Robinson DM, Rogers SL, Russell KA, Schoenhals JE, Shurtleff CA, Simister AR, Smith HG, Stephenson MB, Staley LA, Stettler JM, Stratton ML, Tateoka OB, Tatlow PJ, Taylor AS, Thompson SE, Townsend MH, Thurgood TL, Usher BK, Whitley KV, Ward AT, Ward MEH, Webb CJ, Wienclaw TM, Williamson TL, Wells MJ, Wright CK, Breakwell DP, Hope S, Grose JH.

Genome Announc. 2017 Nov 16;5(46). pii: e00931-17. doi: 10.1128/genomeA.00931-17.

7.

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes.

Aanderud ZT, Vert JC, Lennon JT, Magnusson TW, Breakwell DP, Harker AR.

Front Microbiol. 2016 Jun 9;7:853. doi: 10.3389/fmicb.2016.00853. eCollection 2016.

8.

Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages.

Berg JA, Merrill BD, Crockett JT, Esplin KP, Evans MR, Heaton KE, Hilton JA, Hyde JR, McBride MS, Schouten JT, Simister AR, Thurgood TL, Ward AT, Breakwell DP, Hope S, Grose JH.

PLoS One. 2016 Jun 15;11(6):e0156838. doi: 10.1371/journal.pone.0156838. eCollection 2016.

9.

Genome Sequences of Five Additional Brevibacillus laterosporus Bacteriophages.

Merrill BD, Berg JA, Graves KA, Ward AT, Hilton JA, Wake BN, Grose JH, Breakwell DP, Burnett SH.

Genome Announc. 2015 Oct 22;3(5). pii: e01146-15. doi: 10.1128/genomeA.01146-15.

10.

Correction for Sheflo et al., Complete Genome Sequences of Five Brevibacillus laterosporus Bacteriophages.

Sheflo MA, Gardner AV, Merrill BD, Fisher JN, Lunt BL, Breakwell DP, Grose JH, Burnett SH.

Genome Announc. 2015 Oct 1;3(5). pii: e01113-15. doi: 10.1128/genomeA.01113-15. No abstract available.

11.

Correction: genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity.

Grose JH, Jensen GL, Burnett SH, Breakwell DP.

BMC Genomics. 2014 Dec 29;15:1184. doi: 10.1186/1471-2164-15-1184.

12.

Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity.

Grose JH, Jensen GL, Burnett SH, Breakwell DP.

BMC Genomics. 2014 Oct 4;15:855. doi: 10.1186/1471-2164-15-855. Erratum in: BMC Genomics. 2014;15:1184.

13.

Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages.

Merrill BD, Grose JH, Breakwell DP, Burnett SH.

BMC Genomics. 2014 Aug 30;15:745. doi: 10.1186/1471-2164-15-745.

14.

The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors.

Grose JH, Belnap DM, Jensen JD, Mathis AD, Prince JT, Merrill BD, Burnett SH, Breakwell DP.

J Virol. 2014 Oct;88(20):11846-60. doi: 10.1128/JVI.01364-14. Epub 2014 Aug 6.

15.

Life in extreme environments: microbial diversity in Great Salt Lake, Utah.

Tazi L, Breakwell DP, Harker AR, Crandall KA.

Extremophiles. 2014 May;18(3):525-35. doi: 10.1007/s00792-014-0637-x. Epub 2014 Mar 30.

PMID:
24682608
16.

Genome Sequences of Three Novel Bacillus cereus Bacteriophages.

Grose JH, Jensen JD, Merrill BD, Fisher JN, Burnett SH, Breakwell DP.

Genome Announc. 2014 Jan 23;2(1). pii: e01118-13. doi: 10.1128/genomeA.01118-13.

17.

Genome sequences of five b1 subcluster mycobacteriophages.

Breakwell DP, Barrus EZ, Benedict AB, Brighton AK, Fisher JN, Gardner AV, Kartchner BJ, Ladle KC, Lunt BL, Merrill BD, Morrell JD, Burnett SH, Grose JH.

Genome Announc. 2013 Nov 27;1(6). pii: e00968-13. doi: 10.1128/genomeA.00968-13.

18.

Complete Genome Sequences of Five Paenibacillus larvae Bacteriophages.

Sheflo MA, Gardner AV, Merrill BD, Fisher JN, Lunt BL, Breakwell DP, Grose JH, Burnett SH.

Genome Announc. 2013 Nov 14;1(6). pii: e00668-13. doi: 10.1128/genomeA.00668-13. Erratum in: Genome Announc. 2015 Oct 01;3(5):.

19.

Phage cluster relationships identified through single gene analysis.

Smith KC, Castro-Nallar E, Fisher JN, Breakwell DP, Grose JH, Burnett SH.

BMC Genomics. 2013 Jun 19;14:410. doi: 10.1186/1471-2164-14-410.

20.

Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup.

Shen PS, Domek MJ, Sanz-GarcĂ­a E, Makaju A, Taylor RM, Hoggan R, Culumber MD, Oberg CJ, Breakwell DP, Prince JT, Belnap DM.

J Virol. 2012 Aug;86(15):7907-17. doi: 10.1128/JVI.00407-12. Epub 2012 May 16.

21.

Authentic active learning activities demonstrating the use of serial dilutions and plate counts.

March JK, Jensen KC, Porter NT, Breakwell DP.

J Microbiol Biol Educ. 2011 Dec 1;12(2):152-6. doi: 10.1128/jmbe.v12i2.316. Print 2011.

22.

Differential staining of bacteria: endospore stain.

Reynolds J, Moyes R, Breakwell DP.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3J. doi: 10.1002/9780471729259.mca03js15.

PMID:
19885937
23.

Differential staining of bacteria: capsule stain.

Breakwell DP, Moyes RB, Reynolds J.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3I. doi: 10.1002/9780471729259.mca03is15.

PMID:
19885936
24.

Differential staining of bacteria: acid fast stain.

Reynolds J, Moyes RB, Breakwell DP.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3H. doi: 10.1002/9780471729259.mca03hs15.

PMID:
19885935
25.

Differential staining of bacteria: flagella stain.

Breakwell DP, Moyes RB, Reynolds J.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3G. doi: 10.1002/9780471729259.mca03gs15.

PMID:
19885934
26.

Preliminary staining of bacteria: negative stain.

Moyes RB, Reynolds J, Breakwell DP.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3F. doi: 10.1002/9780471729259.mca03fs15.

PMID:
19885933
27.

Preliminary staining of bacteria: simple stains.

Moyes RB, Reynolds J, Breakwell DP.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3E. doi: 10.1002/9780471729259.mca03es15.

PMID:
19885932
28.

Differential staining of bacteria: gram stain.

Moyes RB, Reynolds J, Breakwell DP.

Curr Protoc Microbiol. 2009 Nov;Appendix 3:Appendix 3C. doi: 10.1002/9780471729259.mca03cs15.

PMID:
19885931
29.

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