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Items: 24

1.

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Mulder N, Schwartz R, Brazas MD, Brooksbank C, Gaeta B, Morgan SL, Pauley MA, Rosenwald A, Rustici G, Sierk M, Warnow T, Welch L.

PLoS Comput Biol. 2018 Feb 1;14(2):e1005772. doi: 10.1371/journal.pcbi.1005772. eCollection 2018 Feb.

2.

A global perspective on evolving bioinformatics and data science training needs.

Attwood TK, Blackford S, Brazas MD, Davies A, Schneider MV.

Brief Bioinform. 2019 Mar 22;20(2):398-404. doi: 10.1093/bib/bbx100.

3.

BioCIDER: a Contextualisation InDEx for biological Resources discovery.

Horro C, Cook M, Attwood TK, Brazas MD, Hancock JM, Palagi P, Corpas M, Jimenez R.

Bioinformatics. 2017 Aug 15;33(16):2607-2608. doi: 10.1093/bioinformatics/btx213.

4.

Training: Plug gap in essential bioinformatics skills.

Brazas MD, Blackford S, Attwood TK.

Nature. 2017 Apr 12;544(7649):161. doi: 10.1038/544161c. No abstract available.

PMID:
28406196
5.

Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.

Brazas MD, Ouellette BF.

PLoS Comput Biol. 2016 Jun 9;12(6):e1004916. doi: 10.1371/journal.pcbi.1004916. eCollection 2016 Jun.

6.

A quick guide for building a successful bioinformatics community.

Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N.

PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.

7.

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK.

Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4.

8.

A quick guide to genomics and bioinformatics training for clinical and public audiences.

Brazas MD, Lewitter F, Schneider MV, van Gelder CW, Palagi PM.

PLoS Comput Biol. 2014 Apr 10;10(4):e1003510. doi: 10.1371/journal.pcbi.1003510. eCollection 2014 Apr. No abstract available.

9.

Best practices in bioinformatics training for life scientists.

Via A, Blicher T, Bongcam-Rudloff E, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, Fernandes PL, van Gelder C, Jacob J, Jimenez RC, Loveland J, Moran F, Mulder N, Nyrönen T, Rother K, Schneider MV, Attwood TK.

Brief Bioinform. 2013 Sep;14(5):528-37. doi: 10.1093/bib/bbt043. Epub 2013 Jun 25.

10.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

11.

Navigating the changing learning landscape: perspective from bioinformatics.ca.

Brazas MD, Ouellette BF.

Brief Bioinform. 2013 Sep;14(5):556-62. doi: 10.1093/bib/bbt016. Epub 2013 Mar 20.

12.

A decade of Web Server updates at the Bioinformatics Links Directory: 2003-2012.

Brazas MD, Yim D, Yeung W, Ouellette BF.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W3-W12. doi: 10.1093/nar/gks632. Epub 2012 Jun 14.

13.

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.

Brief Bioinform. 2012 May;13(3):383-9. doi: 10.1093/bib/bbr064. Epub 2011 Nov 22. Review.

14.

Ten simple rules for developing a short bioinformatics training course.

Via A, De Las Rivas J, Attwood TK, Landsman D, Brazas MD, Leunissen JA, Tramontano A, Schneider MV.

PLoS Comput Biol. 2011 Oct;7(10):e1002245. doi: 10.1371/journal.pcbi.1002245. Epub 2011 Oct 27. No abstract available.

15.

The 2011 Bioinformatics Links Directory update: more resources, tools and databases and features to empower the bioinformatics community.

Brazas MD, Yim DS, Yamada JT, Ouellette BF.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W3-7. doi: 10.1093/nar/gkr514.

16.

Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.

Brazas MD, Yamada JT, Ouellette BF.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W3-6. doi: 10.1093/nar/gkq553. Epub 2010 Jun 11.

17.

Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Brazas MD, Yamada JT, Ouellette BF.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W3-5. doi: 10.1093/nar/gkp531. Epub 2009 Jun 15.

18.

Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.

Brazas MD, Fox JA, Brown T, McMillan S, Ouellette BF.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W2-4. doi: 10.1093/nar/gkn399.

19.

Metabolic changes associated with adaptive diversification in Escherichia coli.

Le Gac M, Brazas MD, Bertrand M, Tyerman JG, Spencer CC, Hancock RE, Doebeli M.

Genetics. 2008 Feb;178(2):1049-60. doi: 10.1534/genetics.107.082040. Epub 2008 Feb 1.

20.

Swarming of Pseudomonas aeruginosa is a complex adaptation leading to increased production of virulence factors and antibiotic resistance.

Overhage J, Bains M, Brazas MD, Hancock RE.

J Bacteriol. 2008 Apr;190(8):2671-9. doi: 10.1128/JB.01659-07. Epub 2008 Feb 1.

21.

Role of lon, an ATP-dependent protease homolog, in resistance of Pseudomonas aeruginosa to ciprofloxacin.

Brazas MD, Breidenstein EB, Overhage J, Hancock RE.

Antimicrob Agents Chemother. 2007 Dec;51(12):4276-83. Epub 2007 Sep 24.

22.

Contribution of the PhoP-PhoQ and PmrA-PmrB two-component regulatory systems to Mg2+-induced gene regulation in Pseudomonas aeruginosa.

McPhee JB, Bains M, Winsor G, Lewenza S, Kwasnicka A, Brazas MD, Brinkman FS, Hancock RE.

J Bacteriol. 2006 Jun;188(11):3995-4006.

23.

Using microarray gene signatures to elucidate mechanisms of antibiotic action and resistance.

Brazas MD, Hancock RE.

Drug Discov Today. 2005 Sep 15;10(18):1245-52. Review.

PMID:
16213417
24.

Ciprofloxacin induction of a susceptibility determinant in Pseudomonas aeruginosa.

Brazas MD, Hancock RE.

Antimicrob Agents Chemother. 2005 Aug;49(8):3222-7.

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