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Prediction of T4SS Effector Proteins for Anaplasma phagocytophilum Using OPT4e, A New Software Tool.

Esna Ashari Z, Brayton KA, Broschat SL.

Front Microbiol. 2019 Jun 21;10:1391. doi: 10.3389/fmicb.2019.01391. eCollection 2019.


A novel Babesia sp. associated with clinical signs of babesiosis in domestic cats in South Africa.

Bosman AM, Penzhorn BL, Brayton KA, Schoeman T, Oosthuizen MC.

Parasit Vectors. 2019 Mar 26;12(1):138. doi: 10.1186/s13071-019-3395-x.


Whole Proteome Clustering of 2,307 Proteobacterial Genomes Reveals Conserved Proteins and Significant Annotation Issues.

Lockwood S, Brayton KA, Daily JA, Broschat SL.

Front Microbiol. 2019 Feb 28;10:383. doi: 10.3389/fmicb.2019.00383. eCollection 2019.


Anaplasma ovis as the suspected cause of mortality in a neonatal elk calf.

Hendrix GK, Brayton KA, Burcham GN.

J Vet Diagn Invest. 2019 Mar;31(2):267-270. doi: 10.1177/1040638719830456. Epub 2019 Feb 8.


Using an optimal set of features with a machine learning-based approach to predict effector proteins for Legionella pneumophila.

Esna Ashari Z, Brayton KA, Broschat SL.

PLoS One. 2019 Jan 25;14(1):e0202312. doi: 10.1371/journal.pone.0202312. eCollection 2019.


The Anaplasma ovis genome reveals a high proportion of pseudogenes.

Liu Z, Peasley AM, Yang J, Li Y, Guan G, Luo J, Yin H, Brayton KA.

BMC Genomics. 2019 Jan 21;20(1):69. doi: 10.1186/s12864-018-5374-6.


A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen.

Catanese HN, Brayton KA, Gebremedhin AH.

BMC Bioinformatics. 2018 Dec 12;19(1):475. doi: 10.1186/s12859-018-2453-2.


Segmental Variation in a Duplicated msp2 Pseudogene Generates Anaplasma marginale Antigenic Variants.

Graça T, Ku PS, Silva MG, Turse JE, Hammac GK, Brown WC, Palmer GH, Brayton KA.

Infect Immun. 2019 Jan 24;87(2). pii: e00727-18. doi: 10.1128/IAI.00727-18. Print 2019 Feb.


Evidence confirming the phylogenetic position of Anaplasma centrale (ex Theiler 1911) Ristic and Kreier 1984.

Khumalo ZTH, Brayton KA, Collins NE, Chaisi ME, Quan M, Oosthuizen MC.

Int J Syst Evol Microbiol. 2018 Aug;68(8):2682-2691. doi: 10.1099/ijsem.0.002832. Epub 2018 Jun 19.


An optimal set of features for predicting type IV secretion system effector proteins for a subset of species based on a multi-level feature selection approach.

Esna Ashari Z, Dasgupta N, Brayton KA, Broschat SL.

PLoS One. 2018 May 9;13(5):e0197041. doi: 10.1371/journal.pone.0197041. eCollection 2018.


Detection and Characterisation of Anaplasma marginale and A. centrale in South Africa.

Hove P, Khumalo ZTH, Chaisi ME, Oosthuizen MC, Brayton KA, Collins NE.

Vet Sci. 2018 Mar 3;5(1). pii: E26. doi: 10.3390/vetsci5010026. Review.


Co-infections with multiple genotypes of Anaplasma marginale in cattle indicate pathogen diversity.

Hove P, Chaisi ME, Brayton KA, Ganesan H, Catanese HN, Mtshali MS, Mutshembele AM, Oosthuizen MC, Collins NE.

Parasit Vectors. 2018 Jan 3;11(1):5. doi: 10.1186/s13071-017-2595-5.


Laboratory colonization stabilizes the naturally dynamic microbiome composition of field collected Dermacentor andersoni ticks.

Gall CA, Scoles GA, Magori K, Mason KL, Brayton KA.

Microbiome. 2017 Oct 4;5(1):133. doi: 10.1186/s40168-017-0352-9.


Identification of Anaplasma ovis appendage-associated protein (AAAP) for development of an indirect ELISA and its application.

Wang Z, Yang J, Niu Q, Brayton KA, Luo J, Liu G, Yin H, Liu Z.

Parasit Vectors. 2017 Jul 28;10(1):359. doi: 10.1186/s13071-017-2297-z.


Engineering of obligate intracellular bacteria: progress, challenges and paradigms.

McClure EE, Chávez ASO, Shaw DK, Carlyon JA, Ganta RR, Noh SM, Wood DO, Bavoil PM, Brayton KA, Martinez JJ, McBride JW, Valdivia RH, Munderloh UG, Pedra JHF.

Nat Rev Microbiol. 2017 Sep;15(9):544-558. doi: 10.1038/nrmicro.2017.59. Epub 2017 Jun 19. Review.


Comparison of three nucleic acid-based tests for detecting <i>Anaplasma marginale</i> and <i>Anaplasma centrale</i> in cattle.

Chaisi ME, Baxter JR, Hove P, Choopa CN, Oosthuizen MC, Brayton KA, Khumalo ZT, Mutshembele AM, Mtshali MS, Collins NE.

Onderstepoort J Vet Res. 2017 Jan 23;84(1):e1-e9. doi: 10.4102/ojvr.v84i1.1262.


Genome Sequence of Bibersteinia trehalosi Strain Y31 Isolated from the Pneumonic Lung of a Bighorn Sheep.

Kugadas A, Humann JL, Pierlé SA, Srikumaran S, Brayton KA.

Genome Announc. 2016 Jul 21;4(4). pii: e00722-16. doi: 10.1128/genomeA.00722-16.


Characterization of Anaplasma marginale subsp. centrale Strains by Use of msp1aS Genotyping Reveals a Wildlife Reservoir.

Khumalo ZT, Catanese HN, Liesching N, Hove P, Collins NE, Chaisi ME, Gebremedhin AH, Oosthuizen MC, Brayton KA.

J Clin Microbiol. 2016 Oct;54(10):2503-12. doi: 10.1128/JCM.01029-16. Epub 2016 Jul 20.


Comparative genomics reveals multiple pathways to mutualism for tick-borne pathogens.

Lockwood S, Brayton KA, Broschat SL.

BMC Genomics. 2016 Jul 2;17:481. doi: 10.1186/s12864-016-2744-9.


RepeatAnalyzer: a tool for analysing and managing short-sequence repeat data.

Catanese HN, Brayton KA, Gebremedhin AH.

BMC Genomics. 2016 Jun 3;17:422. doi: 10.1186/s12864-016-2686-2.


Superinfection Exclusion of the Ruminant Pathogen Anaplasma marginale in Its Tick Vector Is Dependent on the Time between Exposures to the Strains.

Noh SM, Dark MJ, Reif KE, Ueti MW, Kappmeyer LS, Scoles GA, Palmer GH, Brayton KA.

Appl Environ Microbiol. 2016 May 16;82(11):3217-3224. doi: 10.1128/AEM.00190-16. Print 2016 Jun 1.


The bacterial microbiome of Dermacentor andersoni ticks influences pathogen susceptibility.

Gall CA, Reif KE, Scoles GA, Mason KL, Mousel M, Noh SM, Brayton KA.

ISME J. 2016 Aug;10(8):1846-55. doi: 10.1038/ismej.2015.266. Epub 2016 Feb 16.


The characterization and manipulation of the bacterial microbiome of the Rocky Mountain wood tick, Dermacentor andersoni.

Clayton KA, Gall CA, Mason KL, Scoles GA, Brayton KA.

Parasit Vectors. 2015 Dec 10;8:632. doi: 10.1186/s13071-015-1245-z.


Novel Waddlia Intracellular Bacterium in Artibeus intermedius Fruit Bats, Mexico.

Pierlé SA, Morales CO, Martínez LP, Ceballos NA, Rivero JJ, Díaz OL, Brayton KA, Setién AA.

Emerg Infect Dis. 2015 Dec;21(12):2161-3. doi: 10.3201/eid2112.150002.


Subdominant Outer Membrane Antigens in Anaplasma marginale: Conservation, Antigenicity, and Protective Capacity Using Recombinant Protein.

Ducken DR, Brown WC, Alperin DC, Brayton KA, Reif KE, Turse JE, Palmer GH, Noh SM.

PLoS One. 2015 Jun 16;10(6):e0129309. doi: 10.1371/journal.pone.0129309. eCollection 2015.


Reduced Infectivity in cattle for an outer membrane protein mutant of Anaplasma marginale.

Crosby FL, Brayton KA, Magunda F, Munderloh UG, Kelley KL, Barbet AF.

Appl Environ Microbiol. 2015 Mar;81(6):2206-14. doi: 10.1128/AEM.03241-14. Epub 2015 Jan 16.


Genetic Diversity of Tick-Borne Rickettsial Pathogens; Insights Gained from Distant Strains.

Pierlé SA, Rosshandler II, Kerudin AA, Sambono J, Lew-Tabor A, Rolls P, Rangel-Escareño C, Brayton KA.

Pathogens. 2014 Jan 14;3(1):57-72.


Growth of Mannheimia haemolytica: inhibitory agents and putative mechanism of inhibition.

Kugadas A, Poindexter J, Lee ML, Bavananthasivam J, Call DR, Brayton KA, Srikumaran S.

Vet Microbiol. 2014 Nov 7;174(1-2):155-62. doi: 10.1016/j.vetmic.2014.08.003. Epub 2014 Aug 15.


Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.

Mudenda L, Pierlé SA, Turse JE, Scoles GA, Purvine SO, Nicora CD, Clauss TR, Ueti MW, Brown WC, Brayton KA.

Int J Parasitol. 2014 Nov;44(13):1029-37. doi: 10.1016/j.ijpara.2014.07.003. Epub 2014 Aug 7.


Global transcriptional analysis reveals surface remodeling of Anaplasma marginale in the tick vector.

Hammac GK, Pierlé SA, Cheng X, Scoles GA, Brayton KA.

Parasit Vectors. 2014 Apr 21;7:193. doi: 10.1186/1756-3305-7-193.


Identification of Rhipicephalus microplus genes that modulate the infection rate of the rickettsia Anaplasma marginale.

Mercado-Curiel RF, Ávila-Ramírez ML, Palmer GH, Brayton KA.

PLoS One. 2014 Mar 7;9(3):e91062. doi: 10.1371/journal.pone.0091062. eCollection 2014.


The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Dowd SE, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasit Vectors. 2013 Sep 23;6:276. doi: 10.1186/1756-3305-6-276.


Antigenic variation and transmission fitness as drivers of bacterial strain structure.

Palmer GH, Brayton KA.

Cell Microbiol. 2013 Dec;15(12):1969-75. doi: 10.1111/cmi.12182. Epub 2013 Aug 28. Review.


Gut transcriptome of replete adult female cattle ticks, Rhipicephalus (Boophilus) microplus, feeding upon a Babesia bovis-infected bovine host.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Dowd SE, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasitol Res. 2013 Sep;112(9):3075-90. doi: 10.1007/s00436-013-3482-4. Epub 2013 Jun 10.


Protective immunity induced by immunization with a live, cultured Anaplasma marginale strain.

Hammac GK, Ku PS, Galletti MF, Noh SM, Scoles GA, Palmer GH, Brayton KA.

Vaccine. 2013 Aug 2;31(35):3617-22. doi: 10.1016/j.vaccine.2013.04.069. Epub 2013 May 9.


Transcriptional pathways associated with the slow growth phenotype of transformed Anaplasma marginale.

Pierlé SA, Hammac GK, Palmer GH, Brayton KA.

BMC Genomics. 2013 Apr 22;14:272. doi: 10.1186/1471-2164-14-272.


Identification of multilocus genetic heterogeneity in Anaplasma marginale subsp. centrale and its restriction following tick-borne transmission.

Herndon DR, Ueti MW, Reif KE, Noh SM, Brayton KA, Agnes JT, Palmer GH.

Infect Immun. 2013 May;81(5):1852-8. doi: 10.1128/IAI.00199-13. Epub 2013 Mar 18.


Carriage of stx2a differentiates clinical and bovine-biased strains of Escherichia coli O157.

Shringi S, Schmidt C, Katherine K, Brayton KA, Hancock DD, Besser TE.

PLoS One. 2012;7(12):e51572. doi: 10.1371/journal.pone.0051572. Epub 2012 Dec 11.


Comparative genomics and transcriptomics of trait-gene association.

Pierlé SA, Dark MJ, Dahmen D, Palmer GH, Brayton KA.

BMC Genomics. 2012 Nov 26;13:669. doi: 10.1186/1471-2164-13-669.


Comparative genomic analysis and phylogenetic position of Theileria equi.

Kappmeyer LS, Thiagarajan M, Herndon DR, Ramsay JD, Caler E, Djikeng A, Gillespie JJ, Lau AO, Roalson EH, Silva JC, Silva MG, Suarez CE, Ueti MW, Nene VM, Mealey RH, Knowles DP, Brayton KA.

BMC Genomics. 2012 Nov 9;13:603. doi: 10.1186/1471-2164-13-603.


Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasit Vectors. 2012 Aug 7;5:162. doi: 10.1186/1756-3305-5-162.


Characterization of a novel microcin that kills enterohemorrhagic Escherichia coli O157:H7 and O26.

Eberhart LJ, Deringer JR, Brayton KA, Sawant AA, Besser TE, Call DR.

Appl Environ Microbiol. 2012 Sep;78(18):6592-9. doi: 10.1128/AEM.01067-12. Epub 2012 Jul 6.


Expansion of variant diversity associated with a high prevalence of pathogen strain superinfection under conditions of natural transmission.

Ueti MW, Tan Y, Broschat SL, Castañeda Ortiz EJ, Camacho-Nuez M, Mosqueda JJ, Scoles GA, Grimes M, Brayton KA, Palmer GH.

Infect Immun. 2012 Jul;80(7):2354-60. doi: 10.1128/IAI.00341-12. Epub 2012 May 14.


Expression patterns of Anaplasma marginale Msp2 variants change in response to growth in cattle, and tick cells versus mammalian cells.

Chávez AS, Felsheim RF, Kurtti TJ, Ku PS, Brayton KA, Munderloh UG.

PLoS One. 2012;7(4):e36012. doi: 10.1371/journal.pone.0036012. Epub 2012 Apr 25.


Identification of Anaplasma marginale type IV secretion system effector proteins.

Lockwood S, Voth DE, Brayton KA, Beare PA, Brown WC, Heinzen RA, Broschat SL.

PLoS One. 2011;6(11):e27724. doi: 10.1371/journal.pone.0027724. Epub 2011 Nov 28.


Expression and strain variation of the novel "small open reading frame" (smorf) multigene family in Babesia bovis.

Ferreri LM, Brayton KA, Sondgeroth KS, Lau AO, Suarez CE, McElwain TF.

Int J Parasitol. 2012 Feb;42(2):131-8. doi: 10.1016/j.ijpara.2011.10.004. Epub 2011 Nov 22.


Genome-wide screening and identification of antigens for rickettsial vaccine development.

Palmer GH, Brown WC, Noh SM, Brayton KA.

FEMS Immunol Med Microbiol. 2012 Feb;64(1):115-9. doi: 10.1111/j.1574-695X.2011.00878.x.


Expression of Anaplasma marginale ankyrin repeat-containing proteins during infection of the mammalian host and tick vector.

Ramabu SS, Schneider DA, Brayton KA, Ueti MW, Graça T, Futse JE, Noh SM, Baszler TV, Palmer GH.

Infect Immun. 2011 Jul;79(7):2847-55. doi: 10.1128/IAI.05097-11. Epub 2011 May 16.


Temporal characterisation of the organ-specific Rhipicephalus microplus transcriptional response to Anaplasma marginale infection.

Mercado-Curiel RF, Palmer GH, Guerrero FD, Brayton KA.

Int J Parasitol. 2011 Jul;41(8):851-60. doi: 10.1016/j.ijpara.2011.03.003. Epub 2011 Apr 7.

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