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Items: 33


Using genotyping-by-sequencing to predict gender in animals.

Bilton TP, Chappell AJ, Clarke SM, Brauning R, Dodds KG, McEwan JC, Rowe SJ.

Anim Genet. 2019 Jun;50(3):307-310. doi: 10.1111/age.12782. Epub 2019 Apr 7.


Complete Genome Sequence of the Telford Type S Strain of Mycobacterium avium subsp. paratuberculosis.

Brauning R, Plain K, Gautam M, Russell T, Correa CC, Biggs P, Whittington R, Murray A, Price-Carter M.

Microbiol Resour Announc. 2019 Mar 14;8(11). pii: e00004-19. doi: 10.1128/MRA.00004-19.


Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand.

Price-Carter M, Brauning R, de Lisle GW, Livingstone P, Neill M, Sinclair J, Paterson B, Atkinson G, Knowles G, Crews K, Crispell J, Kao R, Robbe-Austerman S, Stuber T, Parkhill J, Wood J, Harris S, Collins DM.

Front Vet Sci. 2018 Oct 30;5:272. doi: 10.3389/fvets.2018.00272. eCollection 2018.


Population Connectivity and Traces of Mitochondrial Introgression in New Zealand Black-Billed Gulls (Larus bulleri).

Mischler C, Veale A, van Stijn T, Brauning R, McEwan JC, Maloney R, Robertson BC.

Genes (Basel). 2018 Nov 9;9(11). pii: E544. doi: 10.3390/genes9110544.


Ovine keratome: identification, localisation and genomic organisation of keratin and keratin-associated proteins.

Yu Z, Plowman JE, Maclean P, Wildermoth JE, Brauning R, McEwan JC, Maqbool NJ.

Anim Genet. 2018 Oct;49(5):361-370. doi: 10.1111/age.12694. Epub 2018 Jul 30.


An entropy-reducing data representation approach for bioinformatic data.

McCulloch AF, Jauregui R, Maclean PH, Ashby RL, Moraga RA, Laugraud A, Brauning R, Dodds KG, McEwan JC.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay029.


Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data.

Bilton TP, McEwan JC, Clarke SM, Brauning R, van Stijn TC, Rowe SJ, Dodds KG.

Genetics. 2018 Jun;209(2):389-400. doi: 10.1534/genetics.118.300831. Epub 2018 Mar 27.


Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds.

Naval-Sanchez M, Nguyen Q, McWilliam S, Porto-Neto LR, Tellam R, Vuocolo T, Reverter A, Perez-Enciso M, Brauning R, Clarke S, McCulloch A, Zamani W, Naderi S, Rezaei HR, Pompanon F, Taberlet P, Worley KC, Gibbs RA, Muzny DM, Jhangiani SN, Cockett N, Daetwyler H, Kijas J.

Nat Commun. 2018 Feb 28;9(1):859. doi: 10.1038/s41467-017-02809-1.


The effects of transcription and recombination on mutational dynamics of short tandem repeats.

Zavodna M, Bagshaw A, Brauning R, Gemmell NJ.

Nucleic Acids Res. 2018 Feb 16;46(3):1321-1330. doi: 10.1093/nar/gkx1253.


Brain urea increase is an early Huntington's disease pathogenic event observed in a prodromal transgenic sheep model and HD cases.

Handley RR, Reid SJ, Brauning R, Maclean P, Mears ER, Fourie I, Patassini S, Cooper GJS, Rudiger SR, McLaughlan CJ, Verma PJ, Gusella JF, MacDonald ME, Waldvogel HJ, Bawden CS, Faull RLM, Snell RG.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):E11293-E11302. doi: 10.1073/pnas.1711243115. Epub 2017 Dec 11.


Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps.

Prieur V, Clarke SM, Brito LF, McEwan JC, Lee MA, Brauning R, Dodds KG, Auvray B.

BMC Genet. 2017 Jul 21;18(1):68. doi: 10.1186/s12863-017-0534-2.


An ovine hepatorenal fibrocystic model of a Meckel-like syndrome associated with dysmorphic primary cilia and TMEM67 mutations.

Stayner C, Poole CA, McGlashan SR, Pilanthananond M, Brauning R, Markie D, Lett B, Slobbe L, Chae A, Johnstone AC, Jensen CG, McEwan JC, Dittmer K, Parker K, Wiles A, Blackburne W, Leichter A, Leask M, Pinnapureddy A, Jennings M, Horsfield JA, Walker RJ, Eccles MR.

Sci Rep. 2017 May 9;7(1):1601. doi: 10.1038/s41598-017-01519-4.


Copy number variants in the sheep genome detected using multiple approaches.

Jenkins GM, Goddard ME, Black MA, Brauning R, Auvray B, Dodds KG, Kijas JW, Cockett N, McEwan JC.

BMC Genomics. 2016 Jun 8;17:441. doi: 10.1186/s12864-016-2754-7.


Construction of relatedness matrices using genotyping-by-sequencing data.

Dodds KG, McEwan JC, Brauning R, Anderson RM, van Stijn TC, Kristjánsson T, Clarke SM.

BMC Genomics. 2015 Dec 9;16:1047. doi: 10.1186/s12864-015-2252-3.


SOLiD SAGE sequencing shows differential gene expression in jejunal lymph node samples of resistant and susceptible red deer (Cervus elaphus) challenged with Mycobacterium avium subsp. paratuberculosis.

Mackintosh CG, Griffin JF, Scott IC, O'Brien R, Stanton JL, MacLean P, Brauning R.

Vet Immunol Immunopathol. 2016 Jan;169:102-10. doi: 10.1016/j.vetimm.2015.10.009. Epub 2015 Nov 10.


SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species.

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.

BMC Genomics. 2015 Apr 10;16:283. doi: 10.1186/s12864-015-1497-1.


Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.


Mutations in the leptin receptor gene associated with delayed onset of puberty are also associated with decreased ovulation and lambing rates in prolific Davisdale sheep.

Juengel JL, French MC, O'Connell AR, Edwards SJ, Haldar A, Brauning R, Farquhar PA, Dodds KG, Galloway SM, Johnstone PD, Davis GH.

Reprod Fertil Dev. 2015 Feb 18. doi: 10.1071/RD14382. [Epub ahead of print]


Genome-wide DNA methylation analysis: no evidence for stable hemimethylation in the sheep muscle genome.

Couldrey C, Brauning R, Henderson HV, McEwan JC.

Anim Genet. 2015 Apr;46(2):185-9. doi: 10.1111/age.12268. Epub 2015 Feb 6.


The accuracy, feasibility and challenges of sequencing short tandem repeats using next-generation sequencing platforms.

Zavodna M, Bagshaw A, Brauning R, Gemmell NJ.

PLoS One. 2014 Dec 1;9(12):e113862. doi: 10.1371/journal.pone.0113862. eCollection 2014.


Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip.

Kijas JW, Porto-Neto L, Dominik S, Reverter A, Bunch R, McCulloch R, Hayes BJ, Brauning R, McEwan J; International Sheep Genomics Consortium.

Anim Genet. 2014 Oct;45(5):754-7. doi: 10.1111/age.12197. Epub 2014 Jul 17.


Genome-wide DNA methylation patterns and transcription analysis in sheep muscle.

Couldrey C, Brauning R, Bracegirdle J, Maclean P, Henderson HV, McEwan JC.

PLoS One. 2014 Jul 10;9(7):e101853. doi: 10.1371/journal.pone.0101853. eCollection 2014.


The sheep genome illuminates biology of the rumen and lipid metabolism.

Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SMJ, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristensen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas J, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP.

Science. 2014 Jun 6;344(6188):1168-1173. doi: 10.1126/science.1252806.


Identifying chromosomal selection-sweep regions in facial eczema selection-line animals using an ovine 50K-SNP array.

Phua SH, Brauning R, Baird HJ, Dodds KG.

Anim Genet. 2014 Apr;45(2):240-7. doi: 10.1111/age.12122. Epub 2014 Feb 13.


Analyses of hypomethylated oil palm gene space.

Low ET, Rosli R, Jayanthi N, Mohd-Amin AH, Azizi N, Chan KL, Maqbool NJ, Maclean P, Brauning R, McCulloch A, Moraga R, Ong-Abdullah M, Singh R.

PLoS One. 2014 Jan 30;9(1):e86728. doi: 10.1371/journal.pone.0086728. eCollection 2014.


Single-nucleotide polymorphisms in the LEPR gene are associated with divergent phenotypes for age at onset of puberty in Davisdale ewes.

Haldar A, French MC, Brauning R, Edwards SJ, O'Connell AR, Farquhar PA, Davis GH, Johnstone PD, Juengel JL.

Biol Reprod. 2014 Feb 20;90(2):33. doi: 10.1095/biolreprod.113.115923. Print 2014 Feb.


Development of a predicted physical map of microsatellite locus positions for pinnipeds, with wider applicability to the Carnivora.

Osborne AJ, Brauning R, Schultz JK, Kennedy MA, Slate J, Gemmell NJ.

Mol Ecol Resour. 2011 May;11(3):503-13. doi: 10.1111/j.1755-0998.2010.02962.x. Epub 2010 Dec 28.


Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.

Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim JJ, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim J, Schnabel RD, Taylor JF.

Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18644-9. doi: 10.1073/pnas.0904691106. Epub 2009 Oct 21.


A multiway analysis for identifying high integrity bovine BACs.

Ratnakumar A, Barris W, McWilliam S, Brauning R, McEwan JC, Snelling WM, Dalrymple BP.

BMC Genomics. 2009 Jan 23;10:46. doi: 10.1186/1471-2164-10-46.


The constituents of Microctonus sp. parasitoid venoms.

Crawford AM, Brauning R, Smolenski G, Ferguson C, Barton D, Wheeler TT, McCulloch A.

Insect Mol Biol. 2008 Jun;17(3):313-24. doi: 10.1111/j.1365-2583.2008.00802.x.


A physical map of the bovine genome.

Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, Eggen A, Everts-van der Wind A, Floriot S, Gautier M, Gill CA, Green RD, Holt R, Jann O, Jones SJ, Kappes SM, Keele JW, de Jong PJ, Larkin DM, Lewin HA, McEwan JC, McKay S, Marra MA, Mathewson CA, Matukumalli LK, Moore SS, Murdoch B, Nicholas FW, Osoegawa K, Roy A, Salih H, Schibler L, Schnabel RD, Silveri L, Skow LC, Smith TP, Sonstegard TS, Taylor JF, Tellam R, Van Tassell CP, Williams JL, Womack JE, Wye NH, Yang G, Zhao S; International Bovine BAC Mapping Consortium.

Genome Biol. 2007;8(8):R165.


PATH: a task for the inference of phylogenies.

del Val C, Ernst P, Bräuning R, Glatting KH, Suhai S.

Bioinformatics. 2002 Apr;18(4):646-7.


[The demonstration of cortisone preparations in local application].

Gessner J, Gabler G, Bräuning R.

Zentralbl Chir. 1967;92(26a Pt 2):1755-9. German. No abstract available.


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