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Items: 1 to 50 of 56

1.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

2.

What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?

Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2019 Jan;130:132-142. doi: 10.1016/j.ympev.2018.10.008. Epub 2018 Oct 12.

PMID:
30321694
3.

How to deal with ground truthing affected by human-induced habitat change?: Identifying high-quality habitats for the Critically Endangered Red Siskin.

Sánchez-Mercado A, Rodríguez-Clark KM, Miranda J, Ferrer-Paris JR, Coyle B, Toro S, Cardozo-Urdaneta A, Braun MJ.

Ecol Evol. 2017 Dec 10;8(2):841-851. doi: 10.1002/ece3.3628. eCollection 2018 Jan.

4.

A Pilot Study on Professional Documentation: Do We Write From a Strengths Perspective?

Braun MJ, Dunn W, Tomchek SD.

Am J Speech Lang Pathol. 2017 Aug 15;26(3):972-981. doi: 10.1044/2017_AJSLP-16-0117.

PMID:
28637055
5.

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.

Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, Yuri T, Braun EL.

Syst Biol. 2017 Sep 1;66(5):857-879. doi: 10.1093/sysbio/syx041.

PMID:
28369655
6.

Heterogeneity and concordance in locus-specific differentiation and introgression between species of towhees.

Kingston SE, Parchman TL, Gompert Z, Buerkle CA, Braun MJ.

J Evol Biol. 2017 Mar;30(3):474-485. doi: 10.1111/jeb.13033. Epub 2017 Jan 9.

7.

High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements.

Lim HC, Braun MJ.

Mol Ecol Resour. 2016 Sep;16(5):1204-23. doi: 10.1111/1755-0998.12568. Epub 2016 Aug 8.

PMID:
27427784
8.

Substance Use, Disordered Eating, and Weight Gain: Describing the Prevention and Treatment Needs of Incarcerated Women.

Drach LL, Maher JE, Braun MJ, Murray SL, Sazie E.

J Correct Health Care. 2016 Apr;22(2):139-45. doi: 10.1177/1078345816634692.

PMID:
26984137
9.

Preliminary Evidence for the Integrated Systems Using Telemedicine.

Reese RM, Braun MJ, Hoffmeier S, Stickle L, Rinner L, Smith C, Ellerbeck K, Jamison R, Wendland M, Jarrett L, Hadorn M.

Telemed J E Health. 2015 Jul;21(7):581-7. doi: 10.1089/tmj.2014.0124. Epub 2015 Apr 21.

PMID:
25898157
10.

Evaluating interactive videoconferencing for assessing symptoms of autism.

Reese RM, Jamison R, Wendland M, Fleming K, Braun MJ, Schuttler JO, Turek J.

Telemed J E Health. 2013 Sep;19(9):671-7. doi: 10.1089/tmj.2012.0312. Epub 2013 Jul 19.

11.

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins.

Parchman TL, Gompert Z, Braun MJ, Brumfield RT, McDonald DB, Uy JA, Zhang G, Jarvis ED, Schlinger BA, Buerkle CA.

Mol Ecol. 2013 Jun;22(12):3304-17. doi: 10.1111/mec.12201. Epub 2013 Feb 26.

PMID:
23441849
12.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

13.

Genomic variation in cline shape across a hybrid zone.

Kingston SE, Jernigan RW, Fagan WF, Braun D, Braun MJ.

Ecol Evol. 2012 Nov;2(11):2737-48. doi: 10.1002/ece3.375. Epub 2012 Oct 1.

14.

[Asymptomatic leiomyosarcoma of the inferior vena cava with pulmonary metastasis as an incidental finding].

Braun MJ, Bürkle V, Dammann F.

Rofo. 2013 Feb;185(2):162-3. doi: 10.1055/s-0032-1325386. Epub 2012 Oct 29. German. No abstract available.

PMID:
23108897
15.

Population genetic structure and its implications for adaptive variation in memory and the hippocampus on a continental scale in food-caching black-capped chickadees.

Pravosudov VV, Roth TC 2nd, Forister ML, Ladage LD, Burg TM, Braun MJ, Davidson BS.

Mol Ecol. 2012 Sep;21(18):4486-97. doi: 10.1111/j.1365-294X.2012.05721.x. Epub 2012 Aug 7.

PMID:
22882305
16.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

17.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
18.

The relationship of metabolic performance and distribution in black-capped and Carolina chickadees.

Olson JR, Cooper SJ, Swanson DL, Braun MJ, Williams JB.

Physiol Biochem Zool. 2010 Mar-Apr;83(2):263-75. doi: 10.1086/648395.

PMID:
20151817
19.

A multi-gene estimate of phylogeny in the nightjars and nighthawks (Caprimulgidae).

Han KL, Robbins MB, Braun MJ.

Mol Phylogenet Evol. 2010 May;55(2):443-53. doi: 10.1016/j.ympev.2010.01.023. Epub 2010 Feb 1.

PMID:
20123032
20.

The effect of marker choice on estimated levels of introgression across an avian (Pipridae: Manacus) hybrid zone.

Yuri T, Jernigan RW, Brumfield RT, Bhagabati NK, Braun MJ.

Mol Ecol. 2009 Dec;18(23):4888-903. doi: 10.1111/j.1365-294X.2009.04381.x. Epub 2009 Oct 27.

PMID:
19863717
21.

A molecular phylogenetic survey of caprimulgiform nightbirds illustrates the utility of non-coding sequences.

Braun MJ, Huddleston CJ.

Mol Phylogenet Evol. 2009 Dec;53(3):948-60. doi: 10.1016/j.ympev.2009.08.025. Epub 2009 Aug 29.

PMID:
19720151
22.

Randomized, controlled trial of prednisone, cyclophosphamide, and cyclosporine in lupus membranous nephropathy.

Austin HA 3rd, Illei GG, Braun MJ, Balow JE.

J Am Soc Nephrol. 2009 Apr;20(4):901-11. doi: 10.1681/ASN.2008060665. Epub 2009 Mar 18.

23.

Microsatellite loci characterized in three African crane species (Gruidae, Aves).

Meares K, Dawson DA, Horsburgh GJ, Glenn TC, Jones KL, Braun MJ, Perrin MR, Taylor TD.

Mol Ecol Resour. 2009 Jan;9(1):308-11. doi: 10.1111/j.1755-0998.2008.02440.x. Epub 2008 Nov 10.

PMID:
21564635
24.

A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.

PMID:
19084073
25.

Phylogenomic evidence for multiple losses of flight in ratite birds.

Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2.

26.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

27.

Duplication of accelerated evolution and growth hormone gene in passerine birds.

Yuri T, Kimball RT, Braun EL, Braun MJ.

Mol Biol Evol. 2008 Feb;25(2):352-61. Epub 2007 Nov 28.

PMID:
18048401
28.

A multi-gene phylogeny of aquiline eagles (Aves: Accipitriformes) reveals extensive paraphyly at the genus level.

Helbig AJ, Kocum A, Seibold I, Braun MJ.

Mol Phylogenet Evol. 2005 Apr;35(1):147-64. Epub 2004 Dec 24.

PMID:
15737588
29.

True and false gharials: a nuclear gene phylogeny of crocodylia.

Harshman J, Huddleston CJ, Bollback JP, Parsons TJ, Braun MJ.

Syst Biol. 2003 Jun;52(3):386-402.

PMID:
12775527
30.
31.

Molecular phylogeny of the marmots (Rodentia: Sciuridae): tests of evolutionary and biogeographic hypotheses.

Steppan SJ, Akhverdyan MR, Lyapunova EA, Fraser DG, Vorontsov NN, Hoffmann RS, Braun MJ.

Syst Biol. 1999 Dec;48(4):715-34.

PMID:
12066297
32.

Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone.

Brumfield RT, Jernigan RW, McDonald DB, Braun MJ.

Evolution. 2001 Oct;55(10):2070-87. Erratum in: Evolution Int J Org Evolution. 2003 Dec;57(12):2919.

PMID:
11761066
33.

Sexual selection on plumage and behavior in an avian hybrid zone: experimental tests of male-male interactions.

McDonald DB, Clay RP, Brumfield RT, Braun MJ.

Evolution. 2001 Jul;55(7):1443-51.

PMID:
11525466
34.

Scrabble.

Braun MJ, Schneider P, Reiners C.

J Bone Miner Res. 1999 Jan;14(1):157-9. No abstract available.

35.
36.
37.
38.

Increasing proportions of uracil in DNA substrates increases inhibition of restriction enzyme digests.

Glenn TC, Waller DR, Braun MJ.

Biotechniques. 1994 Dec;17(6):1086-90.

PMID:
7873177
39.

Response.

Parsons TJ, Olson SL, Braun MJ.

Science. 1994 Jul 1;265(5168):122-3. No abstract available.

PMID:
17774698
40.

Unidirectional spread of secondary sexual plumage traits across an avian hybrid zone.

Parsons TJ, Olson SL, Braun MJ.

Science. 1993 Jun 11;260(5114):1643-6.

PMID:
17810207
41.

Random amplified polymorphic DNA (RAPD) markers readily distinguish cryptic mosquito species (Diptera: Culicidae: Anopheles).

Wilkerson RC, Parsons TJ, Albright DG, Klein TA, Braun MJ.

Insect Mol Biol. 1993;1(4):205-11.

PMID:
8269099
42.

Equipping and organizing comparative molecular genetics laboratories.

Suh Y, Blake JA, Braun MJ.

Methods Enzymol. 1993;224:3-22. Review. No abstract available.

PMID:
8264395
43.

Use of randomly amplified polymorphic DNA markers in comparative genome studies.

Bowditch BM, Albright DG, Williams JG, Braun MJ.

Methods Enzymol. 1993;224:294-309. No abstract available.

PMID:
8264394
44.

Phylogenetic relationships of the thylacine (Mammalia: Thylacinidae) among dasyuroid marsupials: evidence from cytochrome b DNA sequences.

Krajewski C, Driskell AC, Baverstock PR, Braun MJ.

Proc Biol Sci. 1992 Oct 22;250(1327):19-27.

PMID:
1361058
45.

Museums: storehouses of DNA?

Graves GR, Braun MJ.

Science. 1992 Mar 13;255(5050):1335-6. No abstract available.

PMID:
1542783
46.

Nucleotide sequence and genome organization of biologically active proviruses of the bovine immunodeficiency-like virus.

Garvey KJ, Oberste MS, Elser JE, Braun MJ, Gonda MA.

Virology. 1990 Apr;175(2):391-409.

PMID:
2183467
47.

Molecular cloning of biologically active proviruses of bovine immunodeficiency-like virus.

Braun MJ, Lahn S, Boyd AL, Kost TA, Nagashima K, Gonda MA.

Virology. 1988 Dec;167(2):515-23.

PMID:
2462309
48.

Stability of RNA stem-loop structure and distribution of non-random structure in the human immunodeficiency virus (HIV-I).

Le SY, Chen JH, Braun MJ, Gonda MA, Maizel JV.

Nucleic Acids Res. 1988 Jun 10;16(11):5153-68.

49.

The burden of proof in linking AIDS to scrapie.

Braun MJ, Gonda MA, George DG, Bazan JF, Fletterick RJ, Prusiner SB.

Nature. 1987 Dec 10-16;330(6148):525-6. No abstract available.

PMID:
2891035

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