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Items: 46

1.

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells.

Ritter C, Wollmann T, Bernhard P, Gunkel M, Braun DM, Lee JY, Meiners J, Simon R, Sauter G, Erfle H, Rippe K, Bartenschlager R, Rohr K.

Int J Comput Assist Radiol Surg. 2019 Jun 8. doi: 10.1007/s11548-019-02010-3. [Epub ahead of print]

PMID:
31177423
2.

Maize Carbohydrate Partitioning Defective33 Encodes an MCTP Protein and Functions in Sucrose Export from Leaves.

Tran TM, McCubbin TJ, Bihmidine S, Julius BT, Baker RF, Schauflinger M, Weil C, Springer N, Chomet P, Wagner R, Woessner J, Grote K, Peevers J, Slewinski TL, Braun DM.

Mol Plant. 2019 May 16. pii: S1674-2052(19)30165-0. doi: 10.1016/j.molp.2019.05.001. [Epub ahead of print]

PMID:
31102785
3.

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Dec;50(12):1754. doi: 10.1038/s41588-018-0293-7.

PMID:
30425353
4.

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X, Zhu F, Jones T, Zhu X, Bowers J, Wai CM, Zheng C, Shi Y, Chen S, Xu X, Yue J, Nelson DR, Huang L, Li Z, Xu H, Zhou D, Wang Y, Hu W, Lin J, Deng Y, Pandey N, Mancini M, Zerpa D, Nguyen JK, Wang L, Yu L, Xin Y, Ge L, Arro J, Han JO, Chakrabarty S, Pushko M, Zhang W, Ma Y, Ma P, Lv M, Chen F, Zheng G, Xu J, Yang Z, Deng F, Chen X, Liao Z, Zhang X, Lin Z, Lin H, Yan H, Kuang Z, Zhong W, Liang P, Wang G, Yuan Y, Shi J, Hou J, Lin J, Jin J, Cao P, Shen Q, Jiang Q, Zhou P, Ma Y, Zhang X, Xu R, Liu J, Zhou Y, Jia H, Ma Q, Qi R, Zhang Z, Fang J, Fang H, Song J, Wang M, Dong G, Wang G, Chen Z, Ma T, Liu H, Dhungana SR, Huss SE, Yang X, Sharma A, Trujillo JH, Martinez MC, Hudson M, Riascos JJ, Schuler M, Chen LQ, Braun DM, Li L, Yu Q, Wang J, Wang K, Schatz MC, Heckerman D, Van Sluys MA, Souza GM, Moore PH, Sankoff D, VanBuren R, Paterson AH, Nagai C, Ming R.

Nat Genet. 2018 Nov;50(11):1565-1573. doi: 10.1038/s41588-018-0237-2. Epub 2018 Oct 8. Erratum in: Nat Genet. 2018 Dec;50(12):1754.

PMID:
30297971
5.

An in Vivo Imaging Assay Detects Spatial Variability in Glucose Release from Plant Roots.

Voothuluru P, Braun DM, Boyer JS.

Plant Physiol. 2018 Nov;178(3):1002-1010. doi: 10.1104/pp.18.00614. Epub 2018 Sep 20.

6.

Maize lateral root developmental plasticity induced by mild water stress. I: Genotypic variation across a high-resolution series of water potentials.

Dowd TG, Braun DM, Sharp RE.

Plant Cell Environ. 2019 Jul;42(7):2259-2273. doi: 10.1111/pce.13399. Epub 2018 Aug 21.

PMID:
29981147
7.

Maize Carbohydrate partitioning defective1 impacts carbohydrate distribution, callose accumulation, and phloem function.

Julius BT, Slewinski TL, Baker RF, Tzin V, Zhou S, Bihmidine S, Jander G, Braun DM.

J Exp Bot. 2018 Jul 18;69(16):3917-3931. doi: 10.1093/jxb/ery203.

8.

TelNet - a database for human and yeast genes involved in telomere maintenance.

Braun DM, Chung I, Kepper N, Deeg KI, Rippe K.

BMC Genet. 2018 May 18;19(1):32. doi: 10.1186/s12863-018-0617-8.

9.

Sugar Transporters in Plants: New Insights and Discoveries.

Julius BT, Leach KA, Tran TM, Mertz RA, Braun DM.

Plant Cell Physiol. 2017 Sep 1;58(9):1442-1460. doi: 10.1093/pcp/pcx090. Review.

PMID:
28922744
10.

Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays.

Xu J, Tran T, Padilla Marcia CS, Braun DM, Goggin FL.

Plant Physiol Biochem. 2017 Aug;117:51-60. doi: 10.1016/j.plaphy.2017.05.018. Epub 2017 May 29.

11.

In vivo transport of three radioactive [18F]-fluorinated deoxysucrose analogs by the maize sucrose transporter ZmSUT1.

Tran TM, Hampton CS, Brossard TW, Harmata M, Robertson JD, Jurisson SS, Braun DM.

Plant Physiol Biochem. 2017 Jun;115:1-11. doi: 10.1016/j.plaphy.2017.03.006. Epub 2017 Mar 8.

PMID:
28300727
12.

Sucrose transporter2 contributes to maize growth, development, and crop yield.

Leach KA, Tran TM, Slewinski TL, Meeley RB, Braun DM.

J Integr Plant Biol. 2017 Jun;59(6):390-408. doi: 10.1111/jipb.12527. Epub 2017 Apr 14.

PMID:
28206710
13.

Sucrose Transporter ZmSut1 Expression and Localization Uncover New Insights into Sucrose Phloem Loading.

Baker RF, Leach KA, Boyer NR, Swyers MJ, Benitez-Alfonso Y, Skopelitis T, Luo A, Sylvester A, Jackson D, Braun DM.

Plant Physiol. 2016 Nov;172(3):1876-1898. Epub 2016 Sep 12.

14.

Tonoplast Sugar Transporters (SbTSTs) putatively control sucrose accumulation in sweet sorghum stems.

Bihmidine S, Julius BT, Dweikat I, Braun DM.

Plant Signal Behav. 2016;11(1):e1117721. doi: 10.1080/15592324.2015.1117721.

15.

Sucrose accumulation in sweet sorghum stems occurs by apoplasmic phloem unloading and does not involve differential Sucrose transporter expression.

Bihmidine S, Baker RF, Hoffner C, Braun DM.

BMC Plant Biol. 2015 Jul 30;15:186. doi: 10.1186/s12870-015-0572-8.

16.

Radiosynthesis of 6'-Deoxy-6'[18F]Fluorosucrose via Automated Synthesis and Its Utility to Study In Vivo Sucrose Transport in Maize (Zea mays) Leaves.

Rotsch D, Brossard T, Bihmidine S, Ying W, Gaddam V, Harmata M, Robertson JD, Swyers M, Jurisson SS, Braun DM.

PLoS One. 2015 May 29;10(5):e0128989. doi: 10.1371/journal.pone.0128989. eCollection 2015.

17.

SWEETs, transporters for intracellular and intercellular sugar translocation.

Eom JS, Chen LQ, Sosso D, Julius BT, Lin IW, Qu XQ, Braun DM, Frommer WB.

Curr Opin Plant Biol. 2015 Jun;25:53-62. doi: 10.1016/j.pbi.2015.04.005. Epub 2015 May 15. Review.

PMID:
25988582
18.

Efficient molecular marker design using the MaizeGDB Mo17 SNPs and Indels track.

Settles AM, Bagadion AM, Bai F, Zhang J, Barron B, Leach K, Mudunkothge JS, Hoffner C, Bihmidine S, Finefield E, Hibbard J, Dieter E, Malidelis IA, Gustin JL, Karoblyte V, Tseung CW, Braun DM.

G3 (Bethesda). 2014 Apr 17;4(6):1143-5. doi: 10.1534/g3.114.010454.

19.

Understanding and manipulating sucrose phloem loading, unloading, metabolism, and signalling to enhance crop yield and food security.

Braun DM, Wang L, Ruan YL.

J Exp Bot. 2014 Apr;65(7):1713-35. doi: 10.1093/jxb/ert416. Epub 2013 Dec 17. Review.

PMID:
24347463
20.

Regulation of assimilate import into sink organs: update on molecular drivers of sink strength.

Bihmidine S, Hunter CT 3rd, Johns CE, Koch KE, Braun DM.

Front Plant Sci. 2013 Jun 4;4:177. doi: 10.3389/fpls.2013.00177. eCollection 2013.

21.

Rhodamine F: a novel class of fluorous ponytailed dyes for bioconjugation.

Kölmel DK, Rudat B, Braun DM, Bednarek C, Schepers U, Bräse S.

Org Biomol Chem. 2013 Jun 28;11(24):3954-62. doi: 10.1039/c3ob40267c.

PMID:
23615749
22.

The tie-dyed pathway promotes symplastic trafficking in the phloem.

Baker RF, Slewinski TL, Braun DM.

Plant Signal Behav. 2013 Jun;8(6):e24540. doi: 10.4161/psb.24540. Epub 2013 Apr 11.

23.

Tie-dyed2 encodes a callose synthase that functions in vein development and affects symplastic trafficking within the phloem of maize leaves.

Slewinski TL, Baker RF, Stubert A, Braun DM.

Plant Physiol. 2012 Nov;160(3):1540-50. doi: 10.1104/pp.112.202473. Epub 2012 Aug 29.

24.

SWEET as sugar: new sucrose effluxers in plants.

Baker RF, Leach KA, Braun DM.

Mol Plant. 2012 Jul;5(4):766-8. doi: 10.1093/mp/sss054. Review. No abstract available.

25.

Plant science. SWEET! The pathway is complete.

Braun DM.

Science. 2012 Jan 13;335(6065):173-4. doi: 10.1126/science.1216828. No abstract available.

PMID:
22246760
26.

Maize SUT1 functions in phloem loading.

Slewinski TL, Garg A, Johal GS, Braun DM.

Plant Signal Behav. 2010 Jun;5(6):687-90. Epub 2010 Jun 1.

27.

The psychedelic genes of maize redundantly promote carbohydrate export from leaves.

Slewinski TL, Braun DM.

Genetics. 2010 May;185(1):221-32. doi: 10.1534/genetics.109.113357. Epub 2010 Feb 8.

28.

Genetic analyses of cell death in maize (Zea mays, Poaceae) leaves reveal a distinct pathway operating in the camouflage1 mutant.

Huang M, Braun DM.

Am J Bot. 2010 Feb;97(2):357-64. doi: 10.3732/ajb.0900233. Epub 2010 Jan 22.

29.

Camouflage patterning in maize leaves results from a defect in porphobilinogen deaminase.

Huang M, Slewinski TL, Baker RF, Janick-Buckner D, Buckner B, Johal GS, Braun DM.

Mol Plant. 2009 Jul;2(4):773-789. doi: 10.1093/mp/ssp029. Epub 2009 May 14.

30.

Sucrose transporter1 functions in phloem loading in maize leaves.

Slewinski TL, Meeley R, Braun DM.

J Exp Bot. 2009;60(3):881-92. doi: 10.1093/jxb/ern335. Epub 2009 Jan 30.

31.

Genetic control of carbon partitioning in grasses: roles of sucrose transporters and tie-dyed loci in phloem loading.

Braun DM, Slewinski TL.

Plant Physiol. 2009 Jan;149(1):71-81. doi: 10.1104/pp.108.129049. Review. No abstract available. Erratum in: Plant Physiol. 2010 Aug;153(4):1940.

32.

Tie-dyed1 encodes a novel, phloem-expressed transmembrane protein that functions in carbohydrate partitioning.

Ma Y, Slewinski TL, Baker RF, Braun DM.

Plant Physiol. 2009 Jan;149(1):181-94. doi: 10.1104/pp.108.130971. Epub 2008 Oct 15.

33.

Determining the role of Tie-dyed1 in starch metabolism: epistasis analysis with a maize ADP-glucose pyrophosphorylase mutant lacking leaf starch.

Slewinski TL, Ma Y, Baker RF, Huang M, Meeley R, Braun DM.

J Hered. 2008 Nov-Dec;99(6):661-6. doi: 10.1093/jhered/esn062. Epub 2008 Aug 22.

PMID:
18723774
34.

Tie-dyed2 functions with tie-dyed1 to promote carbohydrate export from maize leaves.

Baker RF, Braun DM.

Plant Physiol. 2008 Mar;146(3):1085-97. doi: 10.1104/pp.107.111476. Epub 2008 Jan 24.

35.

Tie-dyed1 and sucrose export defective1 act independently to promote carbohydrate export from maize leaves.

Ma Y, Baker RF, Magallanes-Lundback M, DellaPenna D, Braun DM.

Planta. 2008 Feb;227(3):527-38. Epub 2007 Oct 9.

36.

tie-dyed1 Functions non-cell autonomously to control carbohydrate accumulation in maize leaves.

Baker RF, Braun DM.

Plant Physiol. 2007 Jun;144(2):867-78. Epub 2007 Apr 13.

37.

tie-dyed1 Regulates carbohydrate accumulation in maize leaves.

Braun DM, Ma Y, Inada N, Muszynski MG, Baker RF.

Plant Physiol. 2006 Dec;142(4):1511-22. Epub 2006 Oct 27.

38.

Utility and distribution of conserved noncoding sequences in the grasses.

Kaplinsky NJ, Braun DM, Penterman J, Goff SA, Freeling M.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6147-51. Epub 2002 Apr 23.

39.

Transcriptionally active polymerase chain reaction (TAP): high throughput gene expression using genome sequence data.

Liang X, Teng A, Braun DM, Felgner J, Wang Y, Baker SI, Chen S, Zelphati O, Felgner PL.

J Biol Chem. 2002 Feb 1;277(5):3593-8. Epub 2001 Nov 16.

41.

Plant transmembrane receptors: new pieces in the signaling puzzle.

Braun DM, Walker JC.

Trends Biochem Sci. 1996 Feb;21(2):70-3.

PMID:
8851664
42.

Broadband multilayer antireflection coating for semiconductor laser facets.

Braun DM, Jungerman RL.

Opt Lett. 1995 May 15;20(10):1154-6.

PMID:
19859456
43.

Optical receiver design for high optical return loss.

Braun DM, Sorin WV.

Appl Opt. 1992 Sep 1;31(25):5237-40. doi: 10.1364/AO.31.005237.

PMID:
20733700
44.

Low reflectivity triangular groove surface relief gratings for lnP/ln(0.53)Ga(0.47)As/lnP photodetectors.

Braun DM.

Appl Opt. 1989 Sep 15;28(18):4006-12. doi: 10.1364/AO.28.004006.

PMID:
20555812
45.
46.

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