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Items: 1 to 50 of 174

1.

Mediator complex interaction partners organize the transcriptional network that defines neural stem cells.

Quevedo M, Meert L, Dekker MR, Dekkers DHW, Brandsma JH, van den Berg DLC, Ozgür Z, IJcken WFJV, Demmers J, Fornerod M, Poot RA.

Nat Commun. 2019 Jun 17;10(1):2669. doi: 10.1038/s41467-019-10502-8.

2.

Epithelial dysregulation in obese severe asthmatics with gastro-oesophageal reflux.

Perotin JM, Schofield JPR, Wilson SJ, Ward J, Brandsma J, Strazzeri F, Bansal A, Yang X, Rowe A, Corfield J, Lutter R, Shaw DE, Bakke PS, Caruso M, Dahlén B, Fowler SJ, Horváth I, Howarth P, Krug N, Montuschi P, Sanak M, Sandström T, Sun K, Pandis I, Auffray C, De Meulder B, Lefaudeux D, Riley JH, Sousa AR, Dahlen SE, Adcock IM, Chung KF, Sterk PJ, Skipp PJ, Collins JE, Davies DE, Djukanović R; U-BIOPRED Study Group; U-BIOPRED:.

Eur Respir J. 2019 Jun 27;53(6). pii: 1900453. doi: 10.1183/13993003.00453-2019. Print 2019 Jun. No abstract available.

PMID:
31023846
3.

Sputum proteomic signature of gastro-oesophageal reflux in patients with severe asthma.

Tariq K, Schofield JPR, Nicholas BL, Burg D, Brandsma J, Bansal AT, Wilson SJ, Lutter R, Fowler SJ, Bakke, Caruso M, Dahlen B, Horváth I, Krug N, Montuschi P, Sanak M, Sandström T, Geiser T, Pandis I, Sousa AR, Adcock IM, Shaw DE, Auffray C, Howarth PH, Sterk PJ, Chung KF, Skipp PJ, Dimitrov B, Djukanović R; U-BIOPRED Study Group.

Respir Med. 2019 Apr;150:66-73. doi: 10.1016/j.rmed.2019.02.008. Epub 2019 Feb 11.

PMID:
30961953
4.

Stratification of asthma phenotypes by airway proteomic signatures.

Schofield JPR, Burg D, Nicholas B, Strazzeri F, Brandsma J, Staykova D, Folisi C, Bansal AT, Xian Y, Guo Y, Rowe A, Corfield J, Wilson S, Ward J, Lutter R, Shaw DE, Bakke PS, Caruso M, Dahlen SE, Fowler SJ, Horváth I, Howarth P, Krug N, Montuschi P, Sanak M, Sandström T, Sun K, Pandis I, Riley J, Auffray C, De Meulder B, Lefaudeux D, Sousa AR, Adcock IM, Chung KF, Sterk PJ, Skipp PJ, Djukanović R; U-BIOPRED Study Group.

J Allergy Clin Immunol. 2019 Jul;144(1):70-82. doi: 10.1016/j.jaci.2019.03.013. Epub 2019 Mar 28.

PMID:
30928653
5.

Lipid phenotyping of lung epithelial lining fluid in healthy human volunteers.

Brandsma J, Goss VM, Yang X, Bakke PS, Caruso M, Chanez P, Dahlén SE, Fowler SJ, Horvath I, Krug N, Montuschi P, Sanak M, Sandström T, Shaw DE, Chung KF, Singer F, Fleming LJ, Sousa AR, Pandis I, Bansal AT, Sterk PJ, Djukanović R, Postle AD; U-BIOPRED Study Group.

Metabolomics. 2018 Sep 17;14(10):123. doi: 10.1007/s11306-018-1412-2.

6.

Large-Scale Label-Free Quantitative Mapping of the Sputum Proteome.

Burg D, Schofield JPR, Brandsma J, Staykova D, Folisi C, Bansal A, Nicholas B, Xian Y, Rowe A, Corfield J, Wilson S, Ward J, Lutter R, Fleming L, Shaw DE, Bakke PS, Caruso M, Dahlen SE, Fowler SJ, Hashimoto S, Horváth I, Howarth P, Krug N, Montuschi P, Sanak M, Sandström T, Singer F, Sun K, Pandis I, Auffray C, Sousa AR, Adcock IM, Chung KF, Sterk PJ, Djukanović R, Skipp PJ, The U-Biopred Study Group.

J Proteome Res. 2018 Jun 1;17(6):2072-2091. doi: 10.1021/acs.jproteome.8b00018. Epub 2018 May 23.

7.

Lipidomics of Thalassiosira pseudonana under Phosphorus Stress Reveal Underlying Phospholipid Substitution Dynamics and Novel Diglycosylceramide Substitutes.

Hunter JE, Brandsma J, Dymond MK, Koster G, Moore CM, Postle AD, Mills RA, Attard GS.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e02034-17. doi: 10.1128/AEM.02034-17. Print 2018 Mar 15.

8.

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, Dennis EA, Evans JE, Fauland A, Fiehn O, Gardner MS, Garrett TJ, Gotlinger KH, Han J, Huang Y, Neo AH, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler HC, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland IJ, Leadley M, Lin K, Maddipati KR, McDougall D, Meikle PJ, Mellett NA, Monnin C, Moseley MA, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce JS, Post M, Postle AD, Pugh R, Qiu Y, Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth MR, Sales S, Schuhmann K, Schwartzman ML, Serhan CN, Shevchenko A, Somerville SE, St John-Williams L, Surma MA, Takeda H, Thakare R, Thompson JW, Torta F, Triebl A, Trötzmüller M, Ubhayasekera SJK, Vuckovic D, Weir JM, Welti R, Wenk MR, Wheelock CE, Yao L, Yuan M, Zhao XH, Zhou S.

J Lipid Res. 2017 Dec;58(12):2275-2288. doi: 10.1194/jlr.M079012. Epub 2017 Oct 6.

9.

Genetic and epigenetic features direct differential efficiency of Xist-mediated silencing at X-chromosomal and autosomal locations.

Loda A, Brandsma JH, Vassilev I, Servant N, Loos F, Amirnasr A, Splinter E, Barillot E, Poot RA, Heard E, Gribnau J.

Nat Commun. 2017 Sep 25;8(1):690. doi: 10.1038/s41467-017-00528-1.

10.

An interaction network of mental disorder proteins in neural stem cells.

Moen MJ, Adams HH, Brandsma JH, Dekkers DH, Akinci U, Karkampouna S, Quevedo M, Kockx CE, Ozgür Z, van IJcken WF, Demmers J, Poot RA.

Transl Psychiatry. 2017 Apr 4;7(4):e1082. doi: 10.1038/tp.2017.52.

11.

Contribution of the novel sulfur-producing adjunct Lactobacillus nodensis to flavor development in Gouda cheese.

O'Brien E, Mills S, Dobson A, Serrano LM, Hannon J, Ryan SP, Kilcawley KN, Brandsma JB, Meijer WC, Hill C, Ross RP.

J Dairy Sci. 2017 Jun;100(6):4322-4334. doi: 10.3168/jds.2016-11726. Epub 2017 Mar 30.

12.

Analysis of the regulation of surfactant phosphatidylcholine metabolism using stable isotopes.

Brandsma J, Postle AD.

Ann Anat. 2017 May;211:176-183. doi: 10.1016/j.aanat.2017.02.008. Epub 2017 Mar 25. Review.

PMID:
28351529
13.

Stable isotope analysis of dynamic lipidomics.

Brandsma J, Bailey AP, Koster G, Gould AP, Postle AD.

Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Aug;1862(8):792-796. doi: 10.1016/j.bbalip.2017.03.002. Epub 2017 Mar 14. Review.

PMID:
28302590
14.

Biological or pharmacological activation of protein kinase C alpha constrains hepatitis E virus replication.

Wang W, Wang Y, Debing Y, Zhou X, Yin Y, Xu L, Herrera Carrillo E, Brandsma JH, Poot RA, Berkhout B, Neyts J, Peppelenbosch MP, Pan Q.

Antiviral Res. 2017 Apr;140:1-12. doi: 10.1016/j.antiviral.2017.01.005. Epub 2017 Jan 8.

15.

Drivers of interannual variability in virioplankton abundance at the coastal western Antarctic peninsula and the potential effects of climate change.

Evans C, Brandsma J, Pond DW, Venables HJ, Meredith MP, Witte HJ, Stammerjohn S, Wilson WH, Clarke A, Brussaard CP.

Environ Microbiol. 2017 Feb;19(2):740-755. doi: 10.1111/1462-2920.13627.

PMID:
27902869
16.
17.

Genome-wide association study identifies 74 loci associated with educational attainment.

Okbay A, Beauchamp JP, Fontana MA, Lee JJ, Pers TH, Rietveld CA, Turley P, Chen GB, Emilsson V, Meddens SF, Oskarsson S, Pickrell JK, Thom K, Timshel P, de Vlaming R, Abdellaoui A, Ahluwalia TS, Bacelis J, Baumbach C, Bjornsdottir G, Brandsma JH, Pina Concas M, Derringer J, Furlotte NA, Galesloot TE, Girotto G, Gupta R, Hall LM, Harris SE, Hofer E, Horikoshi M, Huffman JE, Kaasik K, Kalafati IP, Karlsson R, Kong A, Lahti J, van der Lee SJ, deLeeuw C, Lind PA, Lindgren KO, Liu T, Mangino M, Marten J, Mihailov E, Miller MB, van der Most PJ, Oldmeadow C, Payton A, Pervjakova N, Peyrot WJ, Qian Y, Raitakari O, Rueedi R, Salvi E, Schmidt B, Schraut KE, Shi J, Smith AV, Poot RA, St Pourcain B, Teumer A, Thorleifsson G, Verweij N, Vuckovic D, Wellmann J, Westra HJ, Yang J, Zhao W, Zhu Z, Alizadeh BZ, Amin N, Bakshi A, Baumeister SE, Biino G, Bønnelykke K, Boyle PA, Campbell H, Cappuccio FP, Davies G, De Neve JE, Deloukas P, Demuth I, Ding J, Eibich P, Eisele L, Eklund N, Evans DM, Faul JD, Feitosa MF, Forstner AJ, Gandin I, Gunnarsson B, Halldórsson BV, Harris TB, Heath AC, Hocking LJ, Holliday EG, Homuth G, Horan MA, Hottenga JJ, de Jager PL, Joshi PK, Jugessur A, Kaakinen MA, Kähönen M, Kanoni S, Keltigangas-Järvinen L, Kiemeney LA, Kolcic I, Koskinen S, Kraja AT, Kroh M, Kutalik Z, Latvala A, Launer LJ, Lebreton MP, Levinson DF, Lichtenstein P, Lichtner P, Liewald DC; LifeLines Cohort Study, Loukola A, Madden PA, Mägi R, Mäki-Opas T, Marioni RE, Marques-Vidal P, Meddens GA, McMahon G, Meisinger C, Meitinger T, Milaneschi Y, Milani L, Montgomery GW, Myhre R, Nelson CP, Nyholt DR, Ollier WE, Palotie A, Paternoster L, Pedersen NL, Petrovic KE, Porteous DJ, Räikkönen K, Ring SM, Robino A, Rostapshova O, Rudan I, Rustichini A, Salomaa V, Sanders AR, Sarin AP, Schmidt H, Scott RJ, Smith BH, Smith JA, Staessen JA, Steinhagen-Thiessen E, Strauch K, Terracciano A, Tobin MD, Ulivi S, Vaccargiu S, Quaye L, van Rooij FJ, Venturini C, Vinkhuyzen AA, Völker U, Völzke H, Vonk JM, Vozzi D, Waage J, Ware EB, Willemsen G, Attia JR, Bennett DA, Berger K, Bertram L, Bisgaard H, Boomsma DI, Borecki IB, Bültmann U, Chabris CF, Cucca F, Cusi D, Deary IJ, Dedoussis GV, van Duijn CM, Eriksson JG, Franke B, Franke L, Gasparini P, Gejman PV, Gieger C, Grabe HJ, Gratten J, Groenen PJ, Gudnason V, van der Harst P, Hayward C, Hinds DA, Hoffmann W, Hyppönen E, Iacono WG, Jacobsson B, Järvelin MR, Jöckel KH, Kaprio J, Kardia SL, Lehtimäki T, Lehrer SF, Magnusson PK, Martin NG, McGue M, Metspalu A, Pendleton N, Penninx BW, Perola M, Pirastu N, Pirastu M, Polasek O, Posthuma D, Power C, Province MA, Samani NJ, Schlessinger D, Schmidt R, Sørensen TI, Spector TD, Stefansson K, Thorsteinsdottir U, Thurik AR, Timpson NJ, Tiemeier H, Tung JY, Uitterlinden AG, Vitart V, Vollenweider P, Weir DR, Wilson JF, Wright AF, Conley DC, Krueger RF, Davey Smith G, Hofman A, Laibson DI, Medland SE, Meyer MN, Yang J, Johannesson M, Visscher PM, Esko T, Koellinger PD, Cesarini D, Benjamin DJ.

Nature. 2016 May 26;533(7604):539-42. doi: 10.1038/nature17671. Epub 2016 May 11.

18.

Convergent Transcription of Interferon-stimulated Genes by TNF-α and IFN-α Augments Antiviral Activity against HCV and HEV.

Wang W, Xu L, Brandsma JH, Wang Y, Hakim MS, Zhou X, Yin Y, Fuhler GM, van der Laan LJ, van der Woude CJ, Sprengers D, Metselaar HJ, Smits R, Poot RA, Peppelenbosch MP, Pan Q.

Sci Rep. 2016 May 6;6:25482. doi: 10.1038/srep25482.

19.

Human Q fever incidence is associated to spatiotemporal environmental conditions.

Van Leuken JPG, Swart AN, Brandsma J, Terink W, Van de Kassteele J, Droogers P, Sauter F, Havelaar AH, Van der Hoek W.

One Health. 2016 Apr 4;2:77-87. doi: 10.1016/j.onehlt.2016.03.004. eCollection 2016 Dec.

20.

Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency.

Sebastián M, Smith AF, González JM, Fredricks HF, Van Mooy B, Koblížek M, Brandsma J, Koster G, Mestre M, Mostajir B, Pitta P, Postle AD, Sánchez P, Gasol JM, Scanlan DJ, Chen Y.

ISME J. 2016 Apr;10(4):968-78. doi: 10.1038/ismej.2015.172. Epub 2015 Nov 13.

21.

Proteins that bind regulatory regions identified by histone modification chromatin immunoprecipitations and mass spectrometry.

Engelen E, Brandsma JH, Moen MJ, Signorile L, Dekkers DH, Demmers J, Kockx CE, Ozgür Z, van IJcken WF, van den Berg DL, Poot RA.

Nat Commun. 2015 May 20;6:7155. doi: 10.1038/ncomms8155.

22.

Reliability of clinical nerve function assessment in peripheral neuropathies.

Brandsma JW, Wagenaar I, Post E, Nicholls P, Richardus JH.

Lepr Rev. 2014 Mar;85(1):29-35.

PMID:
24974440
23.

Methylation of twelve CpGs in human papillomavirus type 16 (HPV16) as an informative biomarker for the triage of women positive for HPV16 infection.

Brandsma JL, Harigopal M, Kiviat NB, Sun Y, Deng Y, Zelterman D, Lizardi PM, Shabanova VS, Levi A, Yaping T, Hu X, Feng Q.

Cancer Prev Res (Phila). 2014 May;7(5):526-33. doi: 10.1158/1940-6207.CAPR-13-0354. Epub 2014 Feb 20.

24.
25.

Application of 'omics technologies to biomarker discovery in inflammatory lung diseases.

Wheelock CE, Goss VM, Balgoma D, Nicholas B, Brandsma J, Skipp PJ, Snowden S, Burg D, D'Amico A, Horvath I, Chaiboonchoe A, Ahmed H, Ballereau S, Rossios C, Chung KF, Montuschi P, Fowler SJ, Adcock IM, Postle AD, Dahlén SE, Rowe A, Sterk PJ, Auffray C, Djukanovic R; U-BIOPRED Study Group.

Eur Respir J. 2013 Sep;42(3):802-25. doi: 10.1183/09031936.00078812. Epub 2013 Feb 8. Review.

26.

Investigation of neuropathic pain in treated leprosy patients in Ethiopia: a cross-sectional study.

Haroun OM, Hietaharju A, Bizuneh E, Tesfaye F, Brandsma JW, Haanpää M, Rice AS, Lockwood DN.

Pain. 2012 Aug;153(8):1620-4. doi: 10.1016/j.pain.2012.04.007. Epub 2012 Jun 22.

PMID:
22727538
27.

Arginine metabolism in sugar deprived Lactococcus lactis enhances survival and cellular activity, while supporting flavour production.

Brandsma JB, van de Kraats I, Abee T, Zwietering MH, Meijer WC.

Food Microbiol. 2012 Feb;29(1):27-32. doi: 10.1016/j.fm.2011.08.012. Epub 2011 Aug 12.

PMID:
22029915
28.

Prevention of disability in leprosy: the different levels.

Brandsma JW.

Indian J Lepr. 2011 Jan-Mar;83(1):1-8. Review.

PMID:
21638977
29.

A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden.

Brandsma J, van de Vossenberg J, Risgaard-Petersen N, Schmid MC, Engström P, Eurenius K, Hulth S, Jaeschke A, Abbas B, Hopmans EC, Strous M, Schouten S, Jetten MS, Damsté JS.

Environ Microbiol Rep. 2011 Jun;3(3):360-6. doi: 10.1111/j.1758-2229.2010.00233.x. Epub 2011 Jan 10.

PMID:
23761282
30.

Enhanced human papillomavirus type 8 oncogene expression levels are crucial for skin tumorigenesis in transgenic mice.

Hufbauer M, Lazić D, Akgül B, Brandsma JL, Pfister H, Weissenborn SJ.

Virology. 2010 Aug 1;403(2):128-36. doi: 10.1016/j.virol.2010.04.013. Epub 2010 May 7.

31.

A review of clinical tests and signs for the assessment of ulnar neuropathy. Goldman SB, Brininger TL, Schrader JW, Koceja DM. J Hand Ther. 2009;22:209-19.

Brandsma JW.

J Hand Ther. 2010 Jan-Mar;23(1):84-86. doi: 10.1016/j.jht.2009.09.010. No abstract available.

PMID:
20142009
32.

NoxE NADH oxidase and the electron transport chain are responsible for the ability of Lactococcus lactis to decrease the redox potential of milk.

Tachon S, Brandsma JB, Yvon M.

Appl Environ Microbiol. 2010 Mar;76(5):1311-9. doi: 10.1128/AEM.02120-09. Epub 2009 Dec 28.

33.

Reversal of papilloma growth in rabbits therapeutically vaccinated against E6 with naked DNA and/or vesicular stomatitis virus vectors.

Brandsma JL, Shlyankevich M, Su Y, Zelterman D, Rose JK, Buonocore L.

Vaccine. 2010 Dec 6;28(52):8345-51. doi: 10.1016/j.vaccine.2009.04.082. Epub 2009 Jul 15.

34.

A review of the biomechanics of intrinsic replacement in ulnar palsy.

Schwarz RJ, Brandsma JW, Giurintano DJ.

J Hand Surg Eur Vol. 2010 Feb;35(2):94-102. doi: 10.1177/1753193408091569. Epub 2009 Jul 10. Review.

PMID:
19592605
35.

Distinct human papillomavirus type 16 methylomes in cervical cells at different stages of premalignancy.

Brandsma JL, Sun Y, Lizardi PM, Tuck DP, Zelterman D, Haines GK 3rd, Martel M, Harigopal M, Schofield K, Neapolitano M.

Virology. 2009 Jun 20;389(1-2):100-7. doi: 10.1016/j.virol.2009.03.029. Epub 2009 May 13.

36.

Erythema nodosum leprosum in Nepal: a retrospective study of clinical features and response to treatment with prednisolone or thalidomide.

Feuth M, Brandsma JW, Faber WR, Bhattarai B, Feuth T, Anderson AM.

Lepr Rev. 2008 Sep;79(3):254-69.

PMID:
19009975
37.

Mycobacterial infections causing cutaneous disease; or how is leprosy transmitted?

Brandsma JW, Bizuneh E, Temam F, Naafs B.

Lepr Rev. 2008 Jun;79(2):196-8. No abstract available.

PMID:
18711942
38.

The NER protein Rad33 shows functional homology to human Centrin2 and is involved in modification of Rad4.

den Dulk B, van Eijk P, de Ruijter M, Brandsma JA, Brouwer J.

DNA Repair (Amst). 2008 Jun 1;7(6):858-68. doi: 10.1016/j.dnarep.2008.02.004. Epub 2008 Apr 1.

PMID:
18387345
39.

International workshop on neuropathology in leprosy--consensus report.

Van Brakel WH, Saunderson P, Shetty V, Brandsma JW, Post E, Jellema R, McKnight J.

Lepr Rev. 2007 Dec;78(4):416-33. No abstract available.

PMID:
18309718
40.

Partnership for rehabilitation: looking beyond impairments.

Brandsma JW, Harijan T, Wagle P, Baxter KA.

Indian J Lepr. 2008 Jan-Mar;80(1):19-29.

PMID:
19295118
41.

Therapeutic vaccination of rabbits with a ubiquitin-fused papillomavirus E1, E2, E6 and E7 DNA vaccine.

Brandsma JL, Shlyankevich M, Zelterman D, Su Y.

Vaccine. 2007 Aug 14;25(33):6158-63. Epub 2007 Jun 26.

42.

Particle-mediated gene delivery and human skin: ultrastructural observations on stratum corneum barrier structures.

Menon GK, Brandsma JL, Schwartz PM.

Skin Pharmacol Physiol. 2007;20(3):141-7. Epub 2006 Oct 21.

PMID:
17525512
43.

Vesicular stomatitis virus-based therapeutic vaccination targeted to the E1, E2, E6, and E7 proteins of cottontail rabbit papillomavirus.

Brandsma JL, Shylankevich M, Su Y, Roberts A, Rose JK, Zelterman D, Buonocore L.

J Virol. 2007 Jun;81(11):5749-58. Epub 2007 Mar 28.

46.

DNA vaccine design.

Brandsma JL.

Methods Mol Med. 2006;127:3-10. Review.

PMID:
16988442
47.

Therapeutic efficacy of vesicular stomatitis virus-based E6 vaccination in rabbits.

Brandsma JL, Shlyankevich M, Buonocore L, Roberts A, Becker SM, Rose JK.

Vaccine. 2007 Jan 8;25(4):751-62. Epub 2006 Aug 22.

PMID:
16962690
48.

Rad33, a new factor involved in nucleotide excision repair in Saccharomyces cerevisiae.

den Dulk B, Sun SM, de Ruijter M, Brandsma JA, Brouwer J.

DNA Repair (Amst). 2006 Jun 10;5(6):683-92. Epub 2006 Apr 3.

PMID:
16595192
49.

Transformation of a leprosy hospital in Nepal into a rehabilitation centre: the Green Pastures Hospital experience.

Brandsma JW, Schwarz RJ, Anderson AM, Herm FB.

Lepr Rev. 2005 Dec;76(4):267-76.

PMID:
16411507
50.

Molecular classification identifies a subset of human papillomavirus--associated oropharyngeal cancers with favorable prognosis.

Weinberger PM, Yu Z, Haffty BG, Kowalski D, Harigopal M, Brandsma J, Sasaki C, Joe J, Camp RL, Rimm DL, Psyrri A.

J Clin Oncol. 2006 Feb 10;24(5):736-47. Epub 2006 Jan 9.

PMID:
16401683

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