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Items: 32

1.

Use of anti-CRISPR protein AcrIIA4 as a capture ligand for CRISPR/Cas9 detection.

Johnston RK, Seamon KJ, Saada EA, Podlevsky JD, Branda SS, Timlin JA, Harper JC.

Biosens Bioelectron. 2019 Sep 15;141:111361. doi: 10.1016/j.bios.2019.111361. Epub 2019 May 31.

PMID:
31207570
2.

Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT).

Franco M, D'haeseleer PM, Branda SS, Liou MJ, Haider Y, Segelke BW, El-Etr SH.

Front Cell Infect Microbiol. 2018 Oct 23;8:370. doi: 10.3389/fcimb.2018.00370. eCollection 2018.

3.

Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles.

Miller PR, Taylor RM, Tran BQ, Boyd G, Glaros T, Chavez VH, Krishnakumar R, Sinha A, Poorey K, Williams KP, Branda SS, Baca JT, Polsky R.

Commun Biol. 2018 Oct 22;1:173. doi: 10.1038/s42003-018-0170-z. eCollection 2018.

4.

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias.

Krishnakumar R, Sinha A, Bird SW, Jayamohan H, Edwards HS, Schoeniger JS, Patel KD, Branda SS, Bartsch MS.

Sci Rep. 2018 Feb 16;8(1):3159. doi: 10.1038/s41598-018-21484-w.

5.

A rapidly-prototyped microfluidic device for size-based nucleic acid fractionation using isotachophoresis.

Eid C, Branda SS, Meagher RJ.

Analyst. 2017 Jun 12;142(12):2094-2099. doi: 10.1039/c7an00431a.

PMID:
28503691
6.

Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6.

D'haeseleer P, Johnson SL, Davenport KW, Chain PS, Schoeniger J, Ray D, Sinha A, Williams KP, Peña J, Branda SS, El-Etr S.

Genome Announc. 2016 Jun 30;4(3). pii: e00649-16. doi: 10.1128/genomeA.00649-16.

7.

Transcriptomic Analysis of Yersinia enterocolitica Biovar 1B Infecting Murine Macrophages Reveals New Mechanisms of Extracellular and Intracellular Survival.

Bent ZW, Poorey K, Brazel DM, LaBauve AE, Sinha A, Curtis DJ, House SE, Tew KE, Hamblin RY, Williams KP, Branda SS, Young GM, Meagher RJ.

Infect Immun. 2015 Jul;83(7):2672-85. doi: 10.1128/IAI.02922-14. Epub 2015 Apr 20.

8.

The rotary zone thermal cycler: a low-power system enabling automated rapid PCR.

Bartsch MS, Edwards HS, Lee D, Moseley CE, Tew KE, Renzi RF, Van de Vreugde JL, Kim H, Knight DL, Sinha A, Branda SS, Patel KD.

PLoS One. 2015 Mar 31;10(3):e0118182. doi: 10.1371/journal.pone.0118182. eCollection 2015.

9.

A solvent replenishment solution for managing evaporation of biochemical reactions in air-matrix digital microfluidics devices.

Jebrail MJ, Renzi RF, Sinha A, Van De Vreugde J, Gondhalekar C, Ambriz C, Meagher RJ, Branda SS.

Lab Chip. 2015 Jan 7;15(1):151-8. doi: 10.1039/c4lc00703d.

PMID:
25325619
10.

World-to-digital-microfluidic interface enabling extraction and purification of RNA from human whole blood.

Jebrail MJ, Sinha A, Vellucci S, Renzi RF, Ambriz C, Gondhalekar C, Schoeniger JS, Patel KD, Branda SS.

Anal Chem. 2014 Apr 15;86(8):3856-62. doi: 10.1021/ac404085p. Epub 2014 Feb 13.

PMID:
24479881
11.

The Yersinia enterocolitica Ysa type III secretion system is expressed during infections both in vitro and in vivo.

Bent ZW, Branda SS, Young GM.

Microbiologyopen. 2013 Dec;2(6):962-75. doi: 10.1002/mbo3.136. Epub 2013 Oct 24.

12.

Use of a capture-based pathogen transcript enrichment strategy for RNA-Seq analysis of the Francisella tularensis LVS transcriptome during infection of murine macrophages.

Bent ZW, Brazel DM, Tran-Gyamfi MB, Hamblin RY, VanderNoot VA, Branda SS.

PLoS One. 2013 Oct 14;8(10):e77834. doi: 10.1371/journal.pone.0077834. eCollection 2013.

13.

A versatile automated platform for micro-scale cell stimulation experiments.

Sinha A, Jebrail MJ, Kim H, Patel KD, Branda SS.

J Vis Exp. 2013 Aug 6;(78). doi: 10.3791/50597.

14.

A microfluidic DNA library preparation platform for next-generation sequencing.

Kim H, Jebrail MJ, Sinha A, Bent ZW, Solberg OD, Williams KP, Langevin SA, Renzi RF, Van De Vreugde JL, Meagher RJ, Schoeniger JS, Lane TW, Branda SS, Bartsch MS, Patel KD.

PLoS One. 2013 Jul 22;8(7):e68988. doi: 10.1371/journal.pone.0068988. Print 2013.

15.

Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material.

Langevin SA, Bent ZW, Solberg OD, Curtis DJ, Lane PD, Williams KP, Schoeniger JS, Sinha A, Lane TW, Branda SS.

RNA Biol. 2013 Apr;10(4):502-15. doi: 10.4161/rna.24284. Epub 2013 Apr 1.

16.

Enriching pathogen transcripts from infected samples: a capture-based approach to enhanced host-pathogen RNA sequencing.

Bent ZW, Tran-Gyamfi MB, Langevin SA, Brazel DM, Hamblin RY, Branda SS, Patel KD, Lane TW, VanderNoot VA.

Anal Biochem. 2013 Jul 1;438(1):90-6. doi: 10.1016/j.ab.2013.03.008. Epub 2013 Mar 25.

PMID:
23535274
17.

cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications.

Vandernoot VA, Langevin SA, Solberg OD, Lane PD, Curtis DJ, Bent ZW, Williams KP, Patel KD, Schoeniger JS, Branda SS, Lane TW.

Biotechniques. 2012 Dec;53(6):373-80. doi: 10.2144/000113937.

18.

Microfluidically-unified cell culture, sample preparation, imaging and flow cytometry for measurement of cell signaling pathways with single cell resolution.

Wu M, Perroud TD, Srivastava N, Branda CS, Sale KL, Carson BD, Patel KD, Branda SS, Singh AK.

Lab Chip. 2012 Aug 21;12(16):2823-31. doi: 10.1039/c2lc40344g. Epub 2012 Jul 10.

PMID:
22777012
19.

Automated analysis of mouse serum peptidome using restricted access media and nanoliquid chromatography-tandem mass spectrometry.

Gil GC, Brennan J, Throckmorton DJ, Branda SS, Chirica GS.

J Chromatogr B Analyt Technol Biomed Life Sci. 2011 May 1;879(15-16):1112-20. doi: 10.1016/j.jchromb.2011.03.028. Epub 2011 Mar 23.

PMID:
21478059
20.

Fully integrated microfluidic platform enabling automated phosphoprofiling of macrophage response.

Srivastava N, Brennan JS, Renzi RF, Wu M, Branda SS, Singh AK, Herr AE.

Anal Chem. 2009 May 1;81(9):3261-9. doi: 10.1021/ac8024224.

PMID:
19323537
21.

TREM-2 (triggering receptor expressed on myeloid cells 2) is a phagocytic receptor for bacteria.

N'Diaye EN, Branda CS, Branda SS, Nevarez L, Colonna M, Lowell C, Hamerman JA, Seaman WE.

J Cell Biol. 2009 Jan 26;184(2):215-23. doi: 10.1083/jcb.200808080.

22.

A major protein component of the Bacillus subtilis biofilm matrix.

Branda SS, Chu F, Kearns DB, Losick R, Kolter R.

Mol Microbiol. 2006 Feb;59(4):1229-38.

23.

Targets of the master regulator of biofilm formation in Bacillus subtilis.

Chu F, Kearns DB, Branda SS, Kolter R, Losick R.

Mol Microbiol. 2006 Feb;59(4):1216-28.

24.

A master regulator for biofilm formation by Bacillus subtilis.

Kearns DB, Chu F, Branda SS, Kolter R, Losick R.

Mol Microbiol. 2005 Feb;55(3):739-49.

25.

Biofilms: the matrix revisited.

Branda SS, Vik S, Friedman L, Kolter R.

Trends Microbiol. 2005 Jan;13(1):20-6. Review.

PMID:
15639628
26.

Genes involved in formation of structured multicellular communities by Bacillus subtilis.

Branda SS, González-Pastor JE, Dervyn E, Ehrlich SD, Losick R, Kolter R.

J Bacteriol. 2004 Jun;186(12):3970-9.

27.

The Sgs1 helicase regulates chromosome synapsis and meiotic crossing over.

Rockmill B, Fung JC, Branda SS, Roeder GS.

Curr Biol. 2003 Nov 11;13(22):1954-62.

28.

Fruiting body formation by Bacillus subtilis.

Branda SS, González-Pastor JE, Ben-Yehuda S, Losick R, Kolter R.

Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11621-6.

29.

Yeast and human frataxin are processed to mature form in two sequential steps by the mitochondrial processing peptidase.

Branda SS, Cavadini P, Adamec J, Kalousek F, Taroni F, Isaya G.

J Biol Chem. 1999 Aug 6;274(32):22763-9.

30.
31.

3-Hydroxy-3-methylglutaryl coenzyme A lyase: targeting and processing in peroxisomes and mitochondria.

Ashmarina LI, Pshezhetsky AV, Branda SS, Isaya G, Mitchell GA.

J Lipid Res. 1999 Jan;40(1):70-5.

32.

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