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Items: 38

1.

Tet3 regulates cellular identity and DNA methylation in neural progenitor cells.

Santiago M, Antunes C, Guedes M, Iacovino M, Kyba M, Reik W, Sousa N, Pinto L, Branco MR, Marques CJ.

Cell Mol Life Sci. 2019 Oct 23. doi: 10.1007/s00018-019-03335-7. [Epub ahead of print]

PMID:
31646359
2.

TET2 Regulates the Neuroinflammatory Response in Microglia.

Carrillo-Jimenez A, Deniz Ö, Niklison-Chirou MV, Ruiz R, Bezerra-Salomão K, Stratoulias V, Amouroux R, Yip PK, Vilalta A, Cheray M, Scott-Egerton AM, Rivas E, Tayara K, García-Domínguez I, Garcia-Revilla J, Fernandez-Martin JC, Espinosa-Oliva AM, Shen X, St George-Hyslop P, Brown GC, Hajkova P, Joseph B, Venero JL, Branco MR, Burguillos MA.

Cell Rep. 2019 Oct 15;29(3):697-713.e8. doi: 10.1016/j.celrep.2019.09.013.

3.

Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells.

Todd CD, Deniz Ö, Taylor D, Branco MR.

Elife. 2019 Apr 23;8. pii: e44344. doi: 10.7554/eLife.44344.

4.

Author Correction: Regulation of transposable elements by DNA modifications.

Deniz Ö, Frost JM, Branco MR.

Nat Rev Genet. 2019 Jul;20(7):432. doi: 10.1038/s41576-019-0117-3.

PMID:
30894697
5.

Regulation of transposable elements by DNA modifications.

Deniz Ö, Frost JM, Branco MR.

Nat Rev Genet. 2019 Jul;20(7):417-431. doi: 10.1038/s41576-019-0106-6. Review. Erratum in: Nat Rev Genet. 2019 Mar 20;:.

PMID:
30867571
6.

Correction to: Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.

Olova N, Krueger F, Andrews S, Oxley D, Berrens RV, Branco MR, Reik W.

Genome Biol. 2019 Feb 22;20(1):43. doi: 10.1186/s13059-019-1656-9.

7.

Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages.

Schoenfelder S, Mifsud B, Senner CE, Todd CD, Chrysanthou S, Darbo E, Hemberger M, Branco MR.

Nat Commun. 2018 Oct 10;9(1):4189. doi: 10.1038/s41467-018-06666-4.

8.

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data.

Olova N, Krueger F, Andrews S, Oxley D, Berrens RV, Branco MR, Reik W.

Genome Biol. 2018 Mar 15;19(1):33. doi: 10.1186/s13059-018-1408-2. Erratum in: Genome Biol. 2019 Feb 22;20(1):43.

9.

SETDB1 prevents TET2-dependent activation of IAP retroelements in naïve embryonic stem cells.

Deniz Ö, de la Rica L, Cheng KCL, Spensberger D, Branco MR.

Genome Biol. 2018 Jan 19;19(1):6. doi: 10.1186/s13059-017-1376-y.

10.

TET2- and TDG-mediated changes are required for the acquisition of distinct histone modifications in divergent terminal differentiation of myeloid cells.

Garcia-Gomez A, Li T, Kerick M, Català-Moll F, Comet NR, Rodríguez-Ubreva J, de la Rica L, Branco MR, Martín J, Ballestar E.

Nucleic Acids Res. 2017 Sep 29;45(17):10002-10017. doi: 10.1093/nar/gkx666.

11.

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A.

Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24.

PMID:
28436944
12.

Complex multi-enhancer contacts captured by genome architecture mapping.

Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A.

Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8.

13.

TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells.

de la Rica L, Deniz Ö, Cheng KC, Todd CD, Cruz C, Houseley J, Branco MR.

Genome Biol. 2016 Nov 18;17(1):234.

14.

Profiling DNA Methylation and Hydroxymethylation at Retrotransposable Elements.

de la Rica L, Stanley JS, Branco MR.

Methods Mol Biol. 2016;1400:387-401. doi: 10.1007/978-1-4939-3372-3_24.

PMID:
26895066
15.

Maternal DNA Methylation Regulates Early Trophoblast Development.

Branco MR, King M, Perez-Garcia V, Bogutz AB, Caley M, Fineberg E, Lefebvre L, Cook SJ, Dean W, Hemberger M, Reik W.

Dev Cell. 2016 Jan 25;36(2):152-63. doi: 10.1016/j.devcel.2015.12.027.

16.

Bridging genomics technology and biology.

Branco MR.

Genome Biol. 2013;14(10):312.

17.

Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.

Booth MJ, Ost TW, Beraldi D, Bell NM, Branco MR, Reik W, Balasubramanian S.

Nat Protoc. 2013 Oct;8(10):1841-51. doi: 10.1038/nprot.2013.115. Epub 2013 Sep 5.

18.

FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.

Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul YL, Walter J, Cook SJ, Andrews S, Branco MR, Reik W.

Cell Stem Cell. 2013 Sep 5;13(3):351-9. doi: 10.1016/j.stem.2013.06.004. Epub 2013 Jul 11.

19.

Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline.

Hackett JA, Reddington JP, Nestor CE, Dunican DS, Branco MR, Reichmann J, Reik W, Surani MA, Adams IR, Meehan RR.

Development. 2012 Oct;139(19):3623-32. doi: 10.1242/dev.081661.

20.

Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.

Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S.

Genome Biol. 2012 Aug 17;13(8):R69. doi: 10.1186/gb-2012-13-8-r69.

21.

Pairing of homologous regions in the mouse genome is associated with transcription but not imprinting status.

Krueger C, King MR, Krueger F, Branco MR, Osborne CS, Niakan KK, Higgins MJ, Reik W.

PLoS One. 2012;7(7):e38983. doi: 10.1371/journal.pone.0038983. Epub 2012 Jul 3.

22.

In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases.

Arand J, Spieler D, Karius T, Branco MR, Meilinger D, Meissner A, Jenuwein T, Xu G, Leonhardt H, Wolf V, Walter J.

PLoS Genet. 2012 Jun;8(6):e1002750. doi: 10.1371/journal.pgen.1002750. Epub 2012 Jun 28.

23.

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.

Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S.

Science. 2012 May 18;336(6083):934-7. doi: 10.1126/science.1220671. Epub 2012 Apr 26.

24.

Uncovering the role of 5-hydroxymethylcytosine in the epigenome.

Branco MR, Ficz G, Reik W.

Nat Rev Genet. 2011 Nov 15;13(1):7-13. doi: 10.1038/nrg3080. Review.

PMID:
22083101
25.

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W.

Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3.

PMID:
21460836
26.

Poised transcription factories prime silent uPA gene prior to activation.

Ferrai C, Xie SQ, Luraghi P, Munari D, Ramirez F, Branco MR, Pombo A, Crippa MP.

PLoS Biol. 2010 Jan;8(1):e1000270. doi: 10.1371/journal.pbio.1000270. Epub 2010 Jan 5.

27.

The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing.

Redrup L, Branco MR, Perdeaux ER, Krueger C, Lewis A, Santos F, Nagano T, Cobb BS, Fraser P, Reik W.

Development. 2009 Feb;136(4):525-30. doi: 10.1242/dev.031328. Epub 2009 Jan 14.

28.

Safeguarding parental identity: Dnmt1 maintains imprints during epigenetic reprogramming in early embryogenesis.

Branco MR, Oda M, Reik W.

Genes Dev. 2008 Jun 15;22(12):1567-71. doi: 10.1101/gad.1690508.

29.

Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH.

Branco MR, Branco T, Ramirez F, Pombo A.

Chromosome Res. 2008;16(3):413-26. doi: 10.1007/s10577-008-1230-x.

PMID:
18461481
30.

Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region.

Noordermeer D, Branco MR, Splinter E, Klous P, van Ijcken W, Swagemakers S, Koutsourakis M, van der Spek P, Pombo A, de Laat W.

PLoS Genet. 2008 Mar 7;4(3):e1000016. doi: 10.1371/journal.pgen.1000016. Erratum in: PLoS Genet. 2008 Mar;4(3). doi: 10.1371/annotation/b4241c5d-5403-4797-8579-913ef9be560b. Pombo, Ana [added].

31.

Functional organisation of the genome during interphase.

Pombo A, Branco MR.

Curr Opin Genet Dev. 2007 Oct;17(5):451-5. Epub 2007 Oct 24. Review.

PMID:
17920259
32.

Chromosome organization: new facts, new models.

Branco MR, Pombo A.

Trends Cell Biol. 2007 Mar;17(3):127-34. Epub 2007 Jan 2. Review.

PMID:
17197184
33.
34.

[Hypercalcemic crisis associated with primary hyperparathyroidism during pregnancy].

Branco MR, Rodrigues CT, Campos A, Figueiredo A, Coucelo J, Magalhães C, Silva IS, Taborda A, Almeida MC.

Acta Med Port. 2005 Sep-Oct;18(5):395-8. Epub 2005 Oct 16. Portuguese.

35.

[Multiple gestation epidemiology--15 years survey].

Rodrigues CT, Branco MR, Ferreira ID, Nordeste A, Fonseca M, Taborda A, Silva IS, Almeida Mdo C.

Acta Med Port. 2005 Mar-Apr;18(2):107-11. Epub 2005 Apr 28. Portuguese.

36.

Decrease of H2O2 plasma membrane permeability during adaptation to H2O2 in Saccharomyces cerevisiae.

Branco MR, Marinho HS, Cyrne L, Antunes F.

J Biol Chem. 2004 Feb 20;279(8):6501-6. Epub 2003 Nov 26.

37.

[The coconut babaçu (Orbignya phalerata martins) as a probable risk of human infection by the agent of chromoblastomycosis in the State of Maranhão, Brazil].

Silva CM, da Rocha RM, Moreno JS, Branco MR, Silva RR, Marques SG, Costa JM.

Rev Soc Bras Med Trop. 1995 Jan-Mar;28(1):49-52. Portuguese.

PMID:
7724868
38.

[Chromoblastomycosis associated with leprosy: report of 2 cases].

Silva Cde M, Silva AC, Marques SC, Saldanha AC, Nascimento JD, Branco MR, Silva RR, Costa JM.

Rev Soc Bras Med Trop. 1994 Oct-Dec;27(4):241-4. Portuguese.

PMID:
7855367

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