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Items: 14

1.

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK.

mSystems. 2019 Jun 11;4(4). pii: e00061-19. doi: 10.1128/mSystems.00061-19.

2.

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.

Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK.

Cell. 2019 May 30;177(6):1600-1618.e17. doi: 10.1016/j.cell.2019.05.004.

3.

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data.

Bramer LM, Stratton KG, White AM, Bleeker AH, Kobold MA, Waters KM, Metz TO, Rodland KD, Webb-Robertson BM.

J Proteome Res. 2019 Mar 1;18(3):1426-1432. doi: 10.1021/acs.jproteome.8b00840. Epub 2019 Feb 6.

PMID:
30667224
4.

pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.

Stratton KG, Webb-Robertson BM, McCue LA, Stanfill B, Claborne D, Godinez I, Johansen T, Thompson AM, Burnum-Johnson KE, Waters KM, Bramer LM.

J Proteome Res. 2019 Mar 1;18(3):1418-1425. doi: 10.1021/acs.jproteome.8b00760. Epub 2019 Jan 28.

5.

A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.

Whidbey C, Sadler NC, Nair RN, Volk RF, DeLeon AJ, Bramer LM, Fansler SJ, Hansen JR, Shukla AK, Jansson JK, Thrall BD, Wright AT.

J Am Chem Soc. 2019 Jan 9;141(1):42-47. doi: 10.1021/jacs.8b09668. Epub 2018 Dec 17.

6.

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities.

Bottos EM, Kennedy DW, Romero EB, Fansler SJ, Brown JM, Bramer LM, Chu RK, Tfaily MM, Jansson JK, Stegen JC.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy110.

PMID:
29912311
7.

Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.

Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss TR, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BM, Metz TO; TEDDY Study Group.

Mol Cell Proteomics. 2018 Sep;17(9):1824-1836. doi: 10.1074/mcp.RA118.000648. Epub 2018 Apr 17.

8.

P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets.

Webb-Robertson BM, Bramer LM, Jensen JL, Kobold MA, Stratton KG, White AM, Rodland KD.

Cancer Res. 2017 Nov 1;77(21):e47-e50. doi: 10.1158/0008-5472.CAN-17-0335.

9.

Dynamics of the human gut microbiome in inflammatory bowel disease.

Halfvarson J, Brislawn CJ, Lamendella R, Vázquez-Baeza Y, Walters WA, Bramer LM, D'Amato M, Bonfiglio F, McDonald D, Gonzalez A, McClure EE, Dunklebarger MF, Knight R, Jansson JK.

Nat Microbiol. 2017 Feb 13;2:17004. doi: 10.1038/nmicrobiol.2017.4.

10.

21st century United States emissions mitigation could increase water stress more than the climate change it is mitigating.

Hejazi MI, Voisin N, Liu L, Bramer LM, Fortin DC, Hathaway JE, Huang M, Kyle P, Leung LR, Li HY, Liu Y, Patel PL, Pulsipher TC, Rice JS, Tesfa TK, Vernon CR, Zhou Y.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10635-40. doi: 10.1073/pnas.1421675112. Epub 2015 Aug 3.

11.

Relative Influence of Trans-Pacific and Regional Atmospheric Transport of PAHs in the Pacific Northwest, U.S.

Lafontaine S, Schrlau J, Butler J, Jia Y, Harper B, Harris S, Bramer LM, Waters KM, Harding A, Simonich SL.

Environ Sci Technol. 2015 Dec 1;49(23):13807-16. doi: 10.1021/acs.est.5b00800. Epub 2015 Jul 7.

12.

Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse.

Siddens LK, Bunde KL, Harper TA Jr, McQuistan TJ, Löhr CV, Bramer LM, Waters KM, Tilton SC, Krueger SK, Williams DE, Baird WM.

Toxicol Appl Pharmacol. 2015 Sep 1;287(2):149-160. doi: 10.1016/j.taap.2015.05.019. Epub 2015 Jun 3.

13.

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932.

14.

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Aug 16. pii: mcp.O113.030932. [Epub ahead of print]

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