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Items: 23


Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network.

Webb-Robertson BM, Stratton KG, Kyle JE, Kim YM, Bramer LM, Waters KM, Koeller DM, Metz TO.

Anal Chem. 2019 Dec 5. doi: 10.1021/acs.analchem.9b03522. [Epub ahead of print]


Predictive Modeling of Type 1 Diabetes Stages Using Disparate Data Sources.

Frohnert BI, Webb-Robertson BJ, Bramer LM, Reehl SM, Waugh K, Steck AK, Norris JM, Rewers M.

Diabetes. 2019 Nov 18. pii: db181263. doi: 10.2337/db18-1263. [Epub ahead of print]


The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.

Mitchell HD, Eisfeld AJ, Stratton KG, Heller NC, Bramer LM, Wen J, McDermott JE, Gralinski LE, Sims AC, Le MQ, Baric RS, Kawaoka Y, Waters KM.

Front Cell Dev Biol. 2019 Sep 20;7:200. doi: 10.3389/fcell.2019.00200. eCollection 2019.


Extending Classification Algorithms to Case-Control Studies.

Stanfill B, Reehl S, Bramer L, Nakayasu ES, Rich SS, Metz TO, Rewers M, Webb-Robertson BJ; TEDDY Study Group.

Biomed Eng Comput Biol. 2019 Jul 15;10:1179597219858954. doi: 10.1177/1179597219858954. eCollection 2019.


Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK.

mSystems. 2019 Jun 11;4(4). pii: e00061-19. doi: 10.1128/mSystems.00061-19.


Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.

Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK.

Cell. 2019 May 30;177(6):1600-1618.e17. doi: 10.1016/j.cell.2019.05.004.


P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data.

Bramer LM, Stratton KG, White AM, Bleeker AH, Kobold MA, Waters KM, Metz TO, Rodland KD, Webb-Robertson BM.

J Proteome Res. 2019 Mar 1;18(3):1426-1432. doi: 10.1021/acs.jproteome.8b00840. Epub 2019 Feb 6.


pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.

Stratton KG, Webb-Robertson BM, McCue LA, Stanfill B, Claborne D, Godinez I, Johansen T, Thompson AM, Burnum-Johnson KE, Waters KM, Bramer LM.

J Proteome Res. 2019 Mar 1;18(3):1418-1425. doi: 10.1021/acs.jproteome.8b00760. Epub 2019 Jan 28.


A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.

Whidbey C, Sadler NC, Nair RN, Volk RF, DeLeon AJ, Bramer LM, Fansler SJ, Hansen JR, Shukla AK, Jansson JK, Thrall BD, Wright AT.

J Am Chem Soc. 2019 Jan 9;141(1):42-47. doi: 10.1021/jacs.8b09668. Epub 2018 Dec 17.


Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities.

Bottos EM, Kennedy DW, Romero EB, Fansler SJ, Brown JM, Bramer LM, Chu RK, Tfaily MM, Jansson JK, Stegen JC.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy110.


Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.

Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss TR, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BM, Metz TO; TEDDY Study Group.

Mol Cell Proteomics. 2018 Sep;17(9):1824-1836. doi: 10.1074/mcp.RA118.000648. Epub 2018 Apr 17.


P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets.

Webb-Robertson BM, Bramer LM, Jensen JL, Kobold MA, Stratton KG, White AM, Rodland KD.

Cancer Res. 2017 Nov 1;77(21):e47-e50. doi: 10.1158/0008-5472.CAN-17-0335.


Temporal expression profiling of plasma proteins reveals oxidative stress in early stages of Type 1 Diabetes progression.

Liu CW, Bramer L, Webb-Robertson BJ, Waugh K, Rewers MJ, Zhang Q.

J Proteomics. 2018 Feb 10;172:100-110. doi: 10.1016/j.jprot.2017.10.004. Epub 2017 Oct 7.


Dynamics of the human gut microbiome in inflammatory bowel disease.

Halfvarson J, Brislawn CJ, Lamendella R, Vázquez-Baeza Y, Walters WA, Bramer LM, D'Amato M, Bonfiglio F, McDonald D, Gonzalez A, McClure EE, Dunklebarger MF, Knight R, Jansson JK.

Nat Microbiol. 2017 Feb 13;2:17004. doi: 10.1038/nmicrobiol.2017.4.


Temporal profiles of plasma proteome during childhood development.

Liu CW, Bramer L, Webb-Robertson BJ, Waugh K, Rewers MJ, Zhang Q.

J Proteomics. 2017 Jan 30;152:321-328. doi: 10.1016/j.jprot.2016.11.016. Epub 2016 Nov 23.


Dibenzo[def,p]chrysene transplacental carcinogenesis in wild-type, Cyp1b1 knockout, and CYP1B1 humanized mice.

Madeen EP, Löhr CV, You H, Siddens LK, Krueger SK, Dashwood RH, Gonzalez FJ, Baird WM, Ho E, Bramer L, Waters KM, Williams DE.

Mol Carcinog. 2017 Jan;56(1):163-171. doi: 10.1002/mc.22480. Epub 2016 Mar 17.


21st century United States emissions mitigation could increase water stress more than the climate change it is mitigating.

Hejazi MI, Voisin N, Liu L, Bramer LM, Fortin DC, Hathaway JE, Huang M, Kyle P, Leung LR, Li HY, Liu Y, Patel PL, Pulsipher TC, Rice JS, Tesfa TK, Vernon CR, Zhou Y.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10635-40. doi: 10.1073/pnas.1421675112. Epub 2015 Aug 3.


Serum Proteome Profiles in Stricturing Crohn's Disease: A Pilot Study.

Townsend P, Zhang Q, Shapiro J, Webb-Robertson BJ, Bramer L, Schepmoes AA, Weitz KK, Mallette M, Moniz H, Bright R, Merrick M, Shah SA, Sands BE, Leleiko N.

Inflamm Bowel Dis. 2015 Aug;21(8):1935-41. doi: 10.1097/MIB.0000000000000445.


Relative Influence of Trans-Pacific and Regional Atmospheric Transport of PAHs in the Pacific Northwest, U.S.

Lafontaine S, Schrlau J, Butler J, Jia Y, Harper B, Harris S, Bramer LM, Waters KM, Harding A, Simonich SL.

Environ Sci Technol. 2015 Dec 1;49(23):13807-16. doi: 10.1021/acs.est.5b00800. Epub 2015 Jul 7.


Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse.

Siddens LK, Bunde KL, Harper TA Jr, McQuistan TJ, Löhr CV, Bramer LM, Waters KM, Tilton SC, Krueger SK, Williams DE, Baird WM.

Toxicol Appl Pharmacol. 2015 Sep 1;287(2):149-160. doi: 10.1016/j.taap.2015.05.019. Epub 2015 Jun 3.


Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932.


Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM.

Mol Cell Proteomics. 2014 Aug 16. pii: mcp.O113.030932. [Epub ahead of print]


Increased police patrols for preventing alcohol-impaired driving.

Goss CW, Van Bramer LD, Gliner JA, Porter TR, Roberts IG, Diguiseppi C.

Cochrane Database Syst Rev. 2008 Oct 8;(4):CD005242. doi: 10.1002/14651858.CD005242.pub2. Review.

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