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Items: 13

1.

Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity.

Park J, Estrada J, Johnson G, Vincent BJ, Ricci-Tam C, Bragdon MD, Shulgina Y, Cha A, Wunderlich Z, Gunawardena J, DePace AH.

Elife. 2019 Jun 21;8. pii: e41266. doi: 10.7554/eLife.41266.

2.

Quantitative Comparison of the Anterior-Posterior Patterning System in the Embryos of Five Drosophila Species.

Wunderlich Z, Fowlkes CC, Eckenrode KB, Bragdon MDJ, Abiri A, DePace AH.

G3 (Bethesda). 2019 Jul 9;9(7):2171-2182. doi: 10.1534/g3.118.200953.

3.

Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos.

Vincent BJ, Staller MV, Lopez-Rivera F, Bragdon MDJ, Pym ECG, Biette KM, Wunderlich Z, Harden TT, Estrada J, DePace AH.

PLoS Genet. 2018 Sep 7;14(9):e1007644. doi: 10.1371/journal.pgen.1007644. eCollection 2018 Sep.

4.

Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA.

Samee MAH, Lydiard-Martin T, Biette KM, Vincent BJ, Bragdon MD, Eckenrode KB, Wunderlich Z, Estrada J, Sinha S, DePace AH.

Cell Rep. 2017 Oct 3;21(1):236-245. doi: 10.1016/j.celrep.2017.09.033.

5.

Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.

Wunderlich Z, Bragdon MD, Vincent BJ, White JA, Estrada J, DePace AH.

Cell Rep. 2016 Mar 29;14(12):3030. doi: 10.1016/j.celrep.2016.03.032. No abstract available.

6.

Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.

Wunderlich Z, Bragdon MD, Vincent BJ, White JA, Estrada J, DePace AH.

Cell Rep. 2015 Sep 22;12(11):1740-7. doi: 10.1016/j.celrep.2015.08.021. Epub 2015 Sep 3. Erratum in: Cell Rep. 2016 Mar 29;14(12):3030.

7.

Yearly planning meetings: individualized development plans aren't just more paperwork.

Vincent BJ, Scholes C, Staller MV, Wunderlich Z, Estrada J, Park J, Bragdon MD, Lopez Rivera F, Biette KM, DePace AH.

Mol Cell. 2015 Jun 4;58(5):718-21. doi: 10.1016/j.molcel.2015.04.025.

8.

A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate.

Staller MV, Fowlkes CC, Bragdon MD, Wunderlich Z, Estrada J, DePace AH.

Development. 2015 Feb 1;142(3):587-96. doi: 10.1242/dev.117796.

9.

Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo.

Staller MV, Vincent BJ, Bragdon MD, Lydiard-Martin T, Wunderlich Z, Estrada J, DePace AH.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):785-90. doi: 10.1073/pnas.1413877112. Epub 2015 Jan 6.

10.

Comparing mRNA levels using in situ hybridization of a target gene and co-stain.

Wunderlich Z, Bragdon MD, DePace AH.

Methods. 2014 Jun 15;68(1):233-41. doi: 10.1016/j.ymeth.2014.01.003. Epub 2014 Jan 13.

11.

Depleting gene activities in early Drosophila embryos with the "maternal-Gal4-shRNA" system.

Staller MV, Yan D, Randklev S, Bragdon MD, Wunderlich ZB, Tao R, Perkins LA, Depace AH, Perrimon N.

Genetics. 2013 Jan;193(1):51-61. doi: 10.1534/genetics.112.144915. Epub 2012 Oct 26.

12.

Dissecting sources of quantitative gene expression pattern divergence between Drosophila species.

Wunderlich Z, Bragdon MD, Eckenrode KB, Lydiard-Martin T, Pearl-Waserman S, DePace AH.

Mol Syst Biol. 2012;8:604. doi: 10.1038/msb.2012.35.

13.

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.

Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH.

PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27.

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