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Items: 37

1.

Running in circles in phylomorphospace: host environment constrains morphological diversification in parasitic wasps.

Santos BF, Perrard A, Brady SG.

Proc Biol Sci. 2019 Jan 30;286(1895):20182352. doi: 10.1098/rspb.2018.2352.

PMID:
30963952
2.

Compositional heterogeneity and outgroup choice influence the internal phylogeny of the ants.

Borowiec ML, Rabeling C, Brady SG, Fisher BL, Schultz TR, Ward PS.

Mol Phylogenet Evol. 2019 May;134:111-121. doi: 10.1016/j.ympev.2019.01.024. Epub 2019 Feb 7.

PMID:
30738910
3.

Combining transcriptomes and ultraconserved elements to illuminate the phylogeny of Apidae.

Bossert S, Murray EA, Almeida EAB, Brady SG, Blaimer BB, Danforth BN.

Mol Phylogenet Evol. 2019 Jan;130:121-131. doi: 10.1016/j.ympev.2018.10.012. Epub 2018 Oct 14.

4.

Multiple origins of sexual dichromatism and aposematism within large carpenter bees.

Blaimer BB, Mawdsley JR, Brady SG.

Evolution. 2018 Sep;72(9):1874-1889. doi: 10.1111/evo.13558. Epub 2018 Aug 1.

PMID:
30039868
5.

The roles of barriers, refugia, and chromosomal clines underlying diversification in Atlantic Forest social wasps.

Menezes RST, Brady SG, Carvalho AF, Del Lama MA, Costa MA.

Sci Rep. 2017 Aug 9;7(1):7689. doi: 10.1038/s41598-017-07776-7.

6.

Dry habitats were crucibles of domestication in the evolution of agriculture in ants.

Branstetter MG, Ješovnik A, Sosa-Calvo J, Lloyd MW, Faircloth BC, Brady SG, Schultz TR.

Proc Biol Sci. 2017 Apr 12;284(1852). pii: 20170095. doi: 10.1098/rspb.2017.0095.

7.

Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees.

Branstetter MG, Danforth BN, Pitts JP, Faircloth BC, Ward PS, Buffington ML, Gates MW, Kula RR, Brady SG.

Curr Biol. 2017 Apr 3;27(7):1019-1025. doi: 10.1016/j.cub.2017.03.027.

8.

Army ant invasions reveal phylogeographic processes across the Isthmus of Panama.

Brady SG.

Mol Ecol. 2017 Feb;26(3):703-705. doi: 10.1111/mec.13981.

PMID:
28177197
9.

Phylogenetic classifications are informative, stable, and pragmatic: the case for monophyletic taxa.

Ward PS, Brady SG, Fisher BL, Schultz TR.

Insectes Soc. 2016;63(4):489-492. Epub 2016 Sep 19. No abstract available.

10.

Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA.

Mulcahy DG, Macdonald KS 3rd, Brady SG, Meyer C, Barker KB, Coddington J.

PeerJ. 2016 Oct 11;4:e2528. eCollection 2016.

11.

Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens.

Blaimer BB, Lloyd MW, Guillory WX, Brady SG.

PLoS One. 2016 Aug 24;11(8):e0161531. doi: 10.1371/journal.pone.0161531. eCollection 2016.

12.

Reciprocal genomic evolution in the ant-fungus agricultural symbiosis.

Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ.

Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233.

13.

Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga.

Blaimer BB, LaPolla JS, Branstetter MG, Lloyd MW, Brady SG.

Mol Phylogenet Evol. 2016 Sep;102:20-9. doi: 10.1016/j.ympev.2016.05.030. Epub 2016 May 24.

PMID:
27233441
14.

Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants.

Blaimer BB, Brady SG, Schultz TR, Lloyd MW, Fisher BL, Ward PS.

BMC Evol Biol. 2015 Dec 4;15:271. doi: 10.1186/s12862-015-0552-5.

15.

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites.

Smith CR, Helms Cahan S, Kemena C, Brady SG, Yang W, Bornberg-Bauer E, Eriksson T, Gadau J, Helmkampf M, Gotzek D, Okamoto Miyakawa M, Suarez AV, Mikheyev A.

Mol Biol Evol. 2015 Nov;32(11):2919-31. doi: 10.1093/molbev/msv165. Epub 2015 Jul 29.

16.

The most relictual fungus-farming ant species cultivates the most recently evolved and highly domesticated fungal symbiont species.

Schultz TR, Sosa-Calvo J, Brady SG, Lopes CT, Mueller UG, Bacci M Jr, Vasconcelos HL.

Am Nat. 2015 May;185(5):693-703. doi: 10.1086/680501. Epub 2015 Mar 17.

PMID:
25905511
17.

Molecular phylogeny and historical biogeography of the neotropical swarm-founding social wasp genus Synoeca (Hymenoptera: Vespidae).

Menezes RS, Brady SG, Carvalho AF, Del Lama MA, Costa MA.

PLoS One. 2015 Mar 4;10(3):e0119151. doi: 10.1371/journal.pone.0119151. eCollection 2015.

18.

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera.

Faircloth BC, Branstetter MG, White ND, Brady SG.

Mol Ecol Resour. 2015 May;15(3):489-501. doi: 10.1111/1755-0998.12328. Epub 2014 Sep 29.

19.

The rise of army ants and their relatives: diversification of specialized predatory doryline ants.

Brady SG, Fisher BL, Schultz TR, Ward PS.

BMC Evol Biol. 2014 May 1;14:93. doi: 10.1186/1471-2148-14-93.

20.

Multiple origins of kdr-type resistance in the house fly, Musca domestica.

Rinkevich FD, Hedtke SM, Leichter CA, Harris SA, Su C, Brady SG, Taskin V, Qiu X, Scott JG.

PLoS One. 2012;7(12):e52761. doi: 10.1371/journal.pone.0052761. Epub 2012 Dec 28.

21.

The importance of using multiple approaches for identifying emerging invasive species: the case of the Rasberry Crazy Ant in the United States.

Gotzek D, Brady SG, Kallal RJ, LaPolla JS.

PLoS One. 2012;7(9):e45314. doi: 10.1371/journal.pone.0045314. Epub 2012 Sep 19.

22.

Phylogeny of halictine bees supports a shared origin of eusociality for Halictus and Lasioglossum (Apoidea: Anthophila: Halictidae).

Gibbs J, Brady SG, Kanda K, Danforth BN.

Mol Phylogenet Evol. 2012 Dec;65(3):926-39. doi: 10.1016/j.ympev.2012.08.013. Epub 2012 Sep 7.

PMID:
22982437
23.

Symbiont fidelity and the origin of species in fungus-growing ants.

Mehdiabadi NJ, Mueller UG, Brady SG, Himler AG, Schultz TR.

Nat Commun. 2012 May 15;3:840. doi: 10.1038/ncomms1844.

PMID:
22588302
24.

Rooting phylogenies using gene duplications: an empirical example from the bees (Apoidea).

Brady SG, Litman JR, Danforth BN.

Mol Phylogenet Evol. 2011 Sep;60(3):295-304. doi: 10.1016/j.ympev.2011.05.002. Epub 2011 May 12.

PMID:
21600997
25.

Phylogeny and biogeography of dolichoderine ants: effects of data partitioning and relict taxa on historical inference.

Ward PS, Brady SG, Fisher BL, Schultz TR.

Syst Biol. 2010 May;59(3):342-62. doi: 10.1093/sysbio/syq012. Epub 2010 Mar 31.

PMID:
20525640
26.

One nutritional symbiosis begat another: phylogenetic evidence that the ant tribe Camponotini acquired Blochmannia by tending sap-feeding insects.

Wernegreen JJ, Kauppinen SN, Brady SG, Ward PS.

BMC Evol Biol. 2009 Dec 16;9:292. doi: 10.1186/1471-2148-9-292.

27.

Episodes in insect evolution.

Bradley TJ, Briscoe AD, Brady SG, Contreras HL, Danforth BN, Dudley R, Grimaldi D, Harrison JF, Kaiser JA, Merlin C, Reppert SM, Vandenbrooks JM, Yanoviak SP.

Integr Comp Biol. 2009 Nov;49(5):590-606. Epub 2009 Jun 24.

PMID:
21665843
28.

Major evolutionary transitions in ant agriculture.

Schultz TR, Brady SG.

Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5435-40. doi: 10.1073/pnas.0711024105. Epub 2008 Mar 24.

29.

Evaluating alternative hypotheses for the early evolution and diversification of ants.

Brady SG, Schultz TR, Fisher BL, Ward PS.

Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18172-7. Epub 2006 Nov 1.

30.

The history of early bee diversification based on five genes plus morphology.

Danforth BN, Sipes S, Fang J, Brady SG.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15118-23. Epub 2006 Oct 2.

31.

Recent and simultaneous origins of eusociality in halictid bees.

Brady SG, Sipes S, Pearson A, Danforth BN.

Proc Biol Sci. 2006 Jul 7;273(1594):1643-9.

32.

Frequencies of the pyrethroid resistance alleles of Vssc1 and CYP6D1 in house flies from the eastern United States.

Rinkevich FD, Zhang L, Hamm RL, Brady SG, Lazzaro BP, Scott JG.

Insect Mol Biol. 2006 Apr;15(2):157-67.

PMID:
16640726
33.

Single-copy nuclear genes recover cretaceous-age divergences in bees.

Danforth BN, Brady SG, Sipes SD, Pearson A.

Syst Biol. 2004 Apr;53(2):309-26.

PMID:
15205055
34.

Recent intron gain in elongation factor-1alpha of colletid bees (Hymenoptera: Colletidae).

Brady SG, Danforth BN.

Mol Biol Evol. 2004 Apr;21(4):691-6. Epub 2004 Jan 22.

PMID:
14739243
35.
36.

Scaling of accuracy in extremely large phylogenetic trees.

Bininda-Emonds OR, Brady SG, Kim J, Sanderson MJ.

Pac Symp Biocomput. 2001:547-58.

37.

Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants.

Sanderson MJ, Wojciechowski MF, Hu JM, Khan TS, Brady SG.

Mol Biol Evol. 2000 May;17(5):782-97.

PMID:
10779539

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