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Standards-Based Clinical Decision Support Platform to Manage Patients Who Meet Guideline-Based Criteria for Genetic Evaluation of Familial Cancer.

Del Fiol G, Kohlmann W, Bradshaw RL, Weir CR, Flynn M, Hess R, Schiffman JD, Nanjo C, Kawamoto K.

JCO Clin Cancer Inform. 2020 Jan;4:1-9. doi: 10.1200/CCI.19.00120.


DsEcp2-1 is a polymorphic effector that restricts growth of Dothistroma septosporum in pine.

Guo Y, Hunziker L, Mesarich CH, Chettri P, Dupont PY, Ganley RJ, McDougal RL, Barnes I, Bradshaw RE.

Fungal Genet Biol. 2019 Nov 12;135:103300. doi: 10.1016/j.fgb.2019.103300. [Epub ahead of print]


Septal Aperture of the Humerus: Etiology and Frequency Rates in Two European Populations.

Bradshaw R, Eliopoulos C, Borrini M.

Anat Rec (Hoboken). 2019 Oct 11. doi: 10.1002/ar.24290. [Epub ahead of print]


Reduced Virulence of an Introduced Forest Pathogen over 50 Years.

Bradshaw RE, Ormond S, Dupont PY, Chettri P, Ozturk IK, McDougal RL, Bulman LS, Cox MP.

Microorganisms. 2019 Oct 5;7(10). pii: E420. doi: 10.3390/microorganisms7100420.


Determining Onset for Familial Breast and Colorectal Cancer from Family History Comments in the Electronic Health Record.

Mowery DL, Kawamoto K, Bradshaw R, Kohlmann W, Schiffman JD, Weir C, Borbolla D, Chapman WW, Del Fiol G.

AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:173-181. eCollection 2019.


Cancer Proteomics and the Elusive Diagnostic Biomarkers.

Bradshaw RA, Hondermarck H, Rodriguez H.

Proteomics. 2019 Nov;19(21-22):e1800445. doi: 10.1002/pmic.201800445. Epub 2019 Aug 7.


Evolutionary relics dominate the small number of secondary metabolism genes in the hemibiotrophic fungus Dothistroma septosporum.

Ozturk IK, Dupont PY, Chettri P, McDougal R, Böhl OJ, Cox RJ, Bradshaw RE.

Fungal Biol. 2019 May;123(5):397-407. doi: 10.1016/j.funbio.2019.02.006. Epub 2019 Feb 27.


Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation.

Chopyk J, Kulkarni P, Nasko DJ, Bradshaw R, Kniel KE, Chiu P, Sharma M, Sapkota AR.

BMC Res Notes. 2019 Apr 11;12(1):223. doi: 10.1186/s13104-019-4251-y.


Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin-producing strains.

Bradshaw RE, Sim AD, Chettri P, Dupont PY, Guo Y, Hunziker L, McDougal RL, Van der Nest A, Fourie A, Wheeler D, Cox MP, Barnes I.

Mol Plant Pathol. 2019 Jun;20(6):784-799. doi: 10.1111/mpp.12791. Epub 2019 Apr 1.


Quantification of proteins in whole blood, plasma and DBS, with element-labelled antibody detection by ICP-MS.

Hogeling SM, Cox MT, Bradshaw RM, Smith DP, Duckett CJ.

Anal Biochem. 2019 Jun 15;575:10-16. doi: 10.1016/j.ab.2019.03.006. Epub 2019 Mar 20.


The efficacy of zero valent iron-sand filtration on the reduction of Escherichia coli and Listeria monocytogenes in surface water for use in irrigation.

Marik CM, Anderson-Coughlin B, Gartley S, Craighead S, Bradshaw R, Kulkarni P, Sharma M, Kniel KE.

Environ Res. 2019 Jun;173:33-39. doi: 10.1016/j.envres.2019.02.028. Epub 2019 Feb 19.


Prevalence of Shiga-toxigenic and atypical enteropathogenic Escherichia coli in untreated surface water and reclaimed water in the Mid-Atlantic U.S.

Haymaker J, Sharma M, Parveen S, Hashem F, May EB, Handy ET, White C, East C, Bradshaw R, Micallef SA, Callahan MT, Allard S, Anderson B, Craighead S, Gartley S, Vanore A, Kniel KE, Solaiman S, Bui A, Murray R, Craddock HA, Kulkarni P, Foust D, Duncan R, Taabodi M, Sapkota AR.

Environ Res. 2019 May;172:630-636. doi: 10.1016/j.envres.2019.02.019. Epub 2019 Feb 13.


Salmonella enterica in Soils Amended with Heat-Treated Poultry Pellets Survived Longer than Bacteria in Unamended Soils and More Readily Transferred to and Persisted on Spinach.

Shah MK, Bradshaw R, Nyarko E, Handy ET, East C, Millner PD, Bergholz TM, Sharma M.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e00334-19. doi: 10.1128/AEM.00334-19. Print 2019 May 15.


Zerovalent iron-sand filtration can reduce the concentration of multiple antimicrobials in conventionally treated reclaimed water.

Kulkarni P, Raspanti GA, Bui AQ, Bradshaw RN, Kniel KE, Chiu PC, Sharma M, Sapkota A, Sapkota AR.

Environ Res. 2019 May;172:301-309. doi: 10.1016/j.envres.2019.02.012. Epub 2019 Feb 10.


Survival and Growth of Wild-Type and rpoS-Deficient Salmonella Newport Strains in Soil Extracts Prepared with Heat-Treated Poultry Pellets.

Shah MK, Bradshaw R, Nyarko E, Millner PD, Neher D, Weicht T, Bergholz TM, Sharma M.

J Food Prot. 2019 Mar;82(3):501-506. doi: 10.4315/0362-028X.JFP-18-465.


Design and Implementation of a Face-to-Face Peer Feedback Program for Ambulatory Nursing.

Ryiz-Semmel J, France M, Bradshaw R, Khan M, Mulholland B, Meucci J, McGrath J.

J Nurs Adm. 2019 Mar;49(3):143-149. doi: 10.1097/NNA.0000000000000728.


An Engineered Human Fibroblast Growth Factor-1 Derivative, TTHX1114, Ameliorates Short-term Corneal Nitrogen Mustard Injury in Rabbit Organ Cultures.

Eveleth DD, Eveleth JJ, Subramaniam A, Hahn R, Zhou P, Gordon MK, Bradshaw RA.

Invest Ophthalmol Vis Sci. 2018 Sep 4;59(11):4720-4730. doi: 10.1167/iovs.18-24568.


Evaluating Anti-CD32b F(ab) Conformation Using Molecular Dynamics and Small-Angle X-Ray Scattering.

Sutton EJ, Bradshaw RT, Orr CM, Frendéus B, Larsson G, Teige I, Cragg MS, Tews I, Essex JW.

Biophys J. 2018 Jul 17;115(2):289-299. doi: 10.1016/j.bpj.2018.03.040.


The climate, the fuel and the land use: Long-term regional variability of biomass burning in boreal forests.

Molinari C, Lehsten V, Blarquez O, Carcaillet C, Davis BAS, Kaplan JO, Clear J, Bradshaw RHW.

Glob Chang Biol. 2018 Oct;24(10):4929-4945. doi: 10.1111/gcb.14380. Epub 2018 Jul 20.


The analysis of latent fingermarks on polymer banknotes using MALDI-MS.

Scotcher K, Bradshaw R.

Sci Rep. 2018 Jun 8;8(1):8765. doi: 10.1038/s41598-018-27004-0.


An Efficient, Clinically-Natural Electronic Medical Record System that Produces Computable Data.

James BC, Edwards DP, James AF, Bradshaw RL, White KS, Wood C, Huff S.

EGEMS (Wash DC). 2017 Dec 15;5(3):8. doi: 10.5334/egems.202.


Obstetricians' views on the ethics of cardiac surgery for newborns with common aneuploidies.

Fruhman G, Miller C, Amon E, Raible D, Bradshaw R, Martin K.

Prenat Diagn. 2018 Apr;38(5):303-309. doi: 10.1002/pd.5225. Epub 2018 Mar 24.


Chromatin-level regulation of the fragmented dothistromin gene cluster in the forest pathogen Dothistroma septosporum.

Chettri P, Dupont PY, Bradshaw RE.

Mol Microbiol. 2018 Feb;107(4):508-522. doi: 10.1111/mmi.13898. Epub 2018 Jan 5.


Specific Hypersensitive Response-Associated Recognition of New Apoplastic Effectors from Cladosporium fulvum in Wild Tomato.

Mesarich CH, Ӧkmen B, Rovenich H, Griffiths SA, Wang C, Karimi Jashni M, Mihajlovski A, Collemare J, Hunziker L, Deng CH, van der Burgt A, Beenen HG, Templeton MD, Bradshaw RE, de Wit PJGM.

Mol Plant Microbe Interact. 2018 Jan;31(1):145-162. doi: 10.1094/MPMI-05-17-0114-FI. Epub 2017 Nov 16.


Evolution of polyketide synthesis in a Dothideomycete forest pathogen.

Ozturk IK, Chettri P, Dupont PY, Barnes I, McDougal RL, Moore GG, Sim A, Bradshaw RE.

Fungal Genet Biol. 2017 Sep;106:42-50. doi: 10.1016/j.fgb.2017.07.001. Epub 2017 Jul 6.


An update on MALDI mass spectrometry based technology for the analysis of fingermarks - stepping into operational deployment.

Francese S, Bradshaw R, Denison N.

Analyst. 2017 Jul 10;142(14):2518-2546. doi: 10.1039/c7an00569e. Review.


Nerve Growth Factor and Related Substances: A Brief History and an Introduction to the International NGF Meeting Series.

Bradshaw RA, Mobley W, Rush RA.

Int J Mol Sci. 2017 May 26;18(6). pii: E1143. doi: 10.3390/ijms18061143. Review.


MALDI Mass Spectrometry Profiling and Imaging Applied to the Analysis of Latent Fingermarks.

Bradshaw R.

Methods Mol Biol. 2017;1618:149-163. doi: 10.1007/978-1-4939-7051-3_13.


Implementation of MALDI MS profiling and imaging methods for the analysis of real crime scene fingermarks.

Bradshaw R, Denison N, Francese S.

Analyst. 2017 May 2;142(9):1581-1590. doi: 10.1039/c7an00218a.


The health of prisoners: summary of NICE guidance.

Bradshaw R, Pordes BA, Trippier H, Kosky N, Pilling S, O'Brien F; Guideline Committee for the NICE guideline on physical health of people in prisons and the NICE guideline on mental health of adults in contact with the criminal justice system.

BMJ. 2017 Mar 27;356:j1378. doi: 10.1136/bmj.j1378. No abstract available.


Unambiguous high resolution genotyping of human leukocyte antigens.

Bradshaw RA, Dunn PPJ.

J Immunol Methods. 2017 Jun;445:10-14. doi: 10.1016/j.jim.2017.02.011. Epub 2017 Feb 24.


Left subclavian artery revascularization in zone 2 thoracic endovascular aortic repair is associated with lower stroke risk across all aortic diseases.

Bradshaw RJ, Ahanchi SS, Powell O, Larion S, Brandt C, Soult MC, Panneton JM.

J Vasc Surg. 2017 May;65(5):1270-1279. doi: 10.1016/j.jvs.2016.10.111. Epub 2017 Feb 16.


New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.

Abbatiello S, Ackermann BL, Borchers C, Bradshaw RA, Carr SA, Chalkley R, Choi M, Deutsch E, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss M, MacLean B, Mani DR, Neubert H, Smith D, Vitek O, Zimmerman L.

Mol Cell Proteomics. 2017 Mar;16(3):327-328. doi: 10.1074/mcp.E117.067801. Epub 2017 Feb 9. No abstract available.


Axon degeneration induces glial responses through Draper-TRAF4-JNK signalling.

Lu TY, MacDonald JM, Neukomm LJ, Sheehan AE, Bradshaw R, Logan MA, Freeman MR.

Nat Commun. 2017 Feb 6;8:14355. doi: 10.1038/ncomms14355.


Elemental analysis of infant airborne particulate exposures.

Sloan CD, Weber FX, Bradshaw RK, Philipp TJ, Barber WB, Palmer VL, Graul RJ, Tuttle SC, Chartier RT, Johnston JD.

J Expo Sci Environ Epidemiol. 2017 Sep;27(5):526-534. doi: 10.1038/jes.2016.77. Epub 2016 Dec 21.


LaeA negatively regulates dothistromin production in the pine needle pathogen Dothistroma septosporum.

Chettri P, Bradshaw RE.

Fungal Genet Biol. 2016 Dec;97:24-32. doi: 10.1016/j.fgb.2016.11.001. Epub 2016 Nov 3.


Evaluation of solvation free energies for small molecules with the AMOEBA polarizable force field.

Mohamed NA, Bradshaw RT, Essex JW.

J Comput Chem. 2016 Dec 15;37(32):2749-2758. doi: 10.1002/jcc.24500. Epub 2016 Oct 19.


PIK3CA-associated developmental disorders exhibit distinct classes of mutations with variable expression and tissue distribution.

Mirzaa G, Timms AE, Conti V, Boyle EA, Girisha KM, Martin B, Kircher M, Olds C, Juusola J, Collins S, Park K, Carter M, Glass I, Krägeloh-Mann I, Chitayat D, Parikh AS, Bradshaw R, Torti E, Braddock S, Burke L, Ghedia S, Stephan M, Stewart F, Prasad C, Napier M, Saitta S, Straussberg R, Gabbett M, O'Connor BC, Keegan CE, Yin LJ, Lai AHM, Martin N, McKinnon M, Addor MC, Boccuto L, Schwartz CE, Lanoel A, Conway RL, Devriendt K, Tatton-Brown K, Pierpont ME, Painter M, Worgan L, Reggin J, Hennekam R, Tsuchiya K, Pritchard CC, Aracena M, Gripp KW, Cordisco M, Van Esch H, Garavelli L, Curry C, Goriely A, Kayserilli H, Shendure J, Graham J Jr, Guerrini R, Dobyns WB.

JCI Insight. 2016 Jun 16;1(9). pii: 87623. doi: 10.1172/jci.insight.87623.


Advanced Potential Energy Surfaces for Molecular Simulation.

Albaugh A, Boateng HA, Bradshaw RT, Demerdash ON, Dziedzic J, Mao Y, Margul DT, Swails J, Zeng Q, Case DA, Eastman P, Wang LP, Essex JW, Head-Gordon M, Pande VS, Ponder JW, Shao Y, Skylaris CK, Todorov IT, Tuckerman ME, Head-Gordon T.

J Phys Chem B. 2016 Sep 22;120(37):9811-32. doi: 10.1021/acs.jpcb.6b06414. Review.


Evaluating Parametrization Protocols for Hydration Free Energy Calculations with the AMOEBA Polarizable Force Field.

Bradshaw RT, Essex JW.

J Chem Theory Comput. 2016 Aug 9;12(8):3871-83. doi: 10.1021/acs.jctc.6b00276. Epub 2016 Jul 29.


Genome-scale investigation of phenotypically distinct but nearly clonal Trichoderma strains.

Lange C, Weld RJ, Cox MP, Bradshaw RE, McLean KL, Stewart A, Steyaert JM.

PeerJ. 2016 May 12;4:e2023. doi: 10.7717/peerj.2023. eCollection 2016.


Proteomics in India: A Report on a Brainstorming Meeting at Hyderabad, India.

Chatterjee B, Makarov A, Clemmer DE, Steen H, Steen J, Saffell-Clemmer W, Moghekar AR, Mohan Rao C, Bradshaw RA, Thakur SS.

Mol Cell Proteomics. 2016 Jul;15(7):2229-35. doi: 10.1074/mcp.O115.055020. Epub 2016 Apr 25.


Evaporative Cooler Use Influences Temporal Indoor Relative Humidity but Not Dust Mite Allergen Levels in Homes in a Semi-Arid Climate.

Johnston JD, Tuttle SC, Nelson MC, Bradshaw RK, Hoybjerg TG, Johnson JB, Kruman BA, Orton TS, Cook RB, Eggett DL, Weber KS.

PLoS One. 2016 Jan 25;11(1):e0147105. doi: 10.1371/journal.pone.0147105. eCollection 2016.


Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2015 Dec 22;11(12):e1005775. doi: 10.1371/journal.pgen.1005775. eCollection 2015 Dec. No abstract available.


Applications of GPS-tracked personal and fixed-location PM(2.5) continuous exposure monitoring.

Sloan CD, Philipp TJ, Bradshaw RK, Chronister S, Barber WB, Johnston JD.

J Air Waste Manag Assoc. 2016 Jan;66(1):53-65. doi: 10.1080/10962247.2015.1108942.


Prevalence of obesity in panama: some risk factors and associated diseases.

Mc Donald A, Bradshaw RA, Fontes F, Mendoza EA, Motta JA, Cumbrera A, Cruz C.

BMC Public Health. 2015 Oct 21;15:1075. doi: 10.1186/s12889-015-2397-7.


Gene expression patterns in CD4+ peripheral blood cells in healthy subjects and stage IV melanoma patients.

Felts SJ, Van Keulen VP, Scheid AD, Allen KS, Bradshaw RK, Jen J, Peikert T, Middha S, Zhang Y, Block MS, Markovic SN, Pease LR.

Cancer Immunol Immunother. 2015 Nov;64(11):1437-47. doi: 10.1007/s00262-015-1745-x. Epub 2015 Aug 6.


Detection and mapping of illicit drugs and their metabolites in fingermarks by MALDI MS and compatibility with forensic techniques.

Groeneveld G, de Puit M, Bleay S, Bradshaw R, Francese S.

Sci Rep. 2015 Jun 29;5:11716. doi: 10.1038/srep11716.


Proteotranscriptomic Profiling of 231-BR Breast Cancer Cells: Identification of Potential Biomarkers and Therapeutic Targets for Brain Metastasis.

Dun MD, Chalkley RJ, Faulkner S, Keene S, Avery-Kiejda KA, Scott RJ, Falkenby LG, Cairns MJ, Larsen MR, Bradshaw RA, Hondermarck H.

Mol Cell Proteomics. 2015 Sep;14(9):2316-30. doi: 10.1074/mcp.M114.046110. Epub 2015 Jun 3.


On Credibility, Clarity, and Compliance.

Burlingame A, Carr SA, Bradshaw RA, Chalkley RJ.

Mol Cell Proteomics. 2015 Jul;14(7):1731-3. doi: 10.1074/mcp.E115.052506. Epub 2015 Jun 3. No abstract available.

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