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Items: 26

1.

Characteristics and homogeneity of N6-methylation in human genomes.

Pacini CE, Bradshaw CR, Garrett NJ, Koziol MJ.

Sci Rep. 2019 Mar 26;9(1):5185. doi: 10.1038/s41598-019-41601-7.

2.

Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes.

Miyamoto K, Nguyen KT, Allen GE, Jullien J, Kumar D, Otani T, Bradshaw CR, Livesey FJ, Kellis M, Gurdon JB.

Cell Rep. 2018 Jul 10;24(2):304-311. doi: 10.1016/j.celrep.2018.06.030.

3.

Human primary liver cancer-derived organoid cultures for disease modeling and drug screening.

Broutier L, Mastrogiovanni G, Verstegen MM, Francies HE, Gavarró LM, Bradshaw CR, Allen GE, Arnes-Benito R, Sidorova O, Gaspersz MP, Georgakopoulos N, Koo BK, Dietmann S, Davies SE, Praseedom RK, Lieshout R, IJzermans JNM, Wigmore SJ, Saeb-Parsy K, Garnett MJ, van der Laan LJ, Huch M.

Nat Med. 2017 Dec;23(12):1424-1435. doi: 10.1038/nm.4438. Epub 2017 Nov 13.

4.

Reprogramming towards totipotency is greatly facilitated by synergistic effects of small molecules.

Miyamoto K, Tajima Y, Yoshida K, Oikawa M, Azuma R, Allen GE, Tsujikawa T, Tsukaguchi T, Bradshaw CR, Jullien J, Yamagata K, Matsumoto K, Anzai M, Imai H, Gurdon JB, Yamada M.

Biol Open. 2017 Apr 15;6(4):415-424. doi: 10.1242/bio.023473.

5.

H3K4 Methylation-Dependent Memory of Somatic Cell Identity Inhibits Reprogramming and Development of Nuclear Transfer Embryos.

Hörmanseder E, Simeone A, Allen GE, Bradshaw CR, Figlmüller M, Gurdon J, Jullien J.

Cell Stem Cell. 2017 Jul 6;21(1):135-143.e6. doi: 10.1016/j.stem.2017.03.003. Epub 2017 Mar 30.

6.

Identification of Methylated Deoxyadenosines in Genomic DNA by dA6m DNA Immunoprecipitation.

Koziol MJ, Bradshaw CR, Allen GE, Costa AS, Frezza C.

Bio Protoc. 2016 Nov 5;6(21). pii: e1990. doi: 10.21769/BioProtoc.1990.

7.

Mechanical cell competition kills cells via induction of lethal p53 levels.

Wagstaff L, Goschorska M, Kozyrska K, Duclos G, Kucinski I, Chessel A, Hampton-O'Neil L, Bradshaw CR, Allen GE, Rawlins EL, Silberzan P, Carazo Salas RE, Piddini E.

Nat Commun. 2016 Apr 25;7:11373. doi: 10.1038/ncomms11373.

8.

Sperm is epigenetically programmed to regulate gene transcription in embryos.

Teperek M, Simeone A, Gaggioli V, Miyamoto K, Allen GE, Erkek S, Kwon T, Marcotte EM, Zegerman P, Bradshaw CR, Peters AH, Gurdon JB, Jullien J.

Genome Res. 2016 Aug;26(8):1034-46. doi: 10.1101/gr.201541.115. Epub 2016 Mar 31.

9.

Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications.

Koziol MJ, Bradshaw CR, Allen GE, Costa ASH, Frezza C, Gurdon JB.

Nat Struct Mol Biol. 2016 Jan;23(1):24-30. doi: 10.1038/nsmb.3145. Epub 2015 Dec 21.

10.

Histone H3 lysine 9 trimethylation is required for suppressing the expression of an embryonically activated retrotransposon in Xenopus laevis.

Herberg S, Simeone A, Oikawa M, Jullien J, Bradshaw CR, Teperek M, Gurdon J, Miyamoto K.

Sci Rep. 2015 Sep 21;5:14236. doi: 10.1038/srep14236.

11.

A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development.

Tang WW, Dietmann S, Irie N, Leitch HG, Floros VI, Bradshaw CR, Hackett JA, Chinnery PF, Surani MA.

Cell. 2015 Jun 4;161(6):1453-67. doi: 10.1016/j.cell.2015.04.053.

12.

Hierarchical molecular events driven by oocyte-specific factors lead to rapid and extensive reprogramming.

Jullien J, Miyamoto K, Pasque V, Allen GE, Bradshaw CR, Garrett NJ, Halley-Stott RP, Kimura H, Ohsumi K, Gurdon JB.

Mol Cell. 2014 Aug 21;55(4):524-36. doi: 10.1016/j.molcel.2014.06.024. Epub 2014 Jul 24.

13.

CDK phosphorylation of SLD-2 is required for replication initiation and germline development in C. elegans.

Gaggioli V, Zeiser E, Rivers D, Bradshaw CR, Ahringer J, Zegerman P.

J Cell Biol. 2014 Feb 17;204(4):507-22. doi: 10.1083/jcb.201310083. Erratum in: J Cell Biol. 2014 Mar 17;204(6):1075.

14.

Nuclear Wave1 is required for reprogramming transcription in oocytes and for normal development.

Miyamoto K, Teperek M, Yusa K, Allen GE, Bradshaw CR, Gurdon JB.

Science. 2013 Aug 30;341(6149):1002-5. doi: 10.1126/science.1240376.

15.

Titration of four replication factors is essential for the Xenopus laevis midblastula transition.

Collart C, Allen GE, Bradshaw CR, Smith JC, Zegerman P.

Science. 2013 Aug 23;341(6148):893-6. doi: 10.1126/science.1241530. Epub 2013 Aug 1.

16.

Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development.

Cannon JE, Place ES, Eve AM, Bradshaw CR, Sesay A, Morrell NW, Smith JC.

Mech Dev. 2013 Feb;130(2-3):122-31. doi: 10.1016/j.mod.2012.10.002. Epub 2012 Oct 13.

17.

Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity.

Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, Marsico G, Volkmer M, Habermann B, Zerial M.

Nat Cell Biol. 2012 May 27;14(7):666-76. doi: 10.1038/ncb2508.

PMID:
22634595
18.

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.

Rodriguez R, Miller KM, Forment JV, Bradshaw CR, Nikan M, Britton S, Oelschlaegel T, Xhemalce B, Balasubramanian S, Jackson SP.

Nat Chem Biol. 2012 Feb 5;8(3):301-10. doi: 10.1038/nchembio.780.

19.

Replication stress induces 53BP1-containing OPT domains in G1 cells.

Harrigan JA, Belotserkovskaya R, Coates J, Dimitrova DS, Polo SE, Bradshaw CR, Fraser P, Jackson SP.

J Cell Biol. 2011 Apr 4;193(1):97-108. doi: 10.1083/jcb.201011083. Epub 2011 Mar 28.

20.

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.

Bradshaw CR, Surendranath V, Henschel R, Mueller MS, Habermann BH.

PLoS One. 2011 Mar 10;6(3):e17568. doi: 10.1371/journal.pone.0017568.

21.

Systems survey of endocytosis by multiparametric image analysis.

Collinet C, Stöter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M.

Nature. 2010 Mar 11;464(7286):243-9. doi: 10.1038/nature08779. Epub 2010 Feb 28. Erratum in: Nature. 2014 Sep 18;513(7518):444.

PMID:
20190736
22.

Conformational adaptability of Redbeta during DNA annealing and implications for its structural relationship with Rad52.

Erler A, Wegmann S, Elie-Caille C, Bradshaw CR, Maresca M, Seidel R, Habermann B, Muller DJ, Stewart AF.

J Mol Biol. 2009 Aug 21;391(3):586-98. doi: 10.1016/j.jmb.2009.06.030. Epub 2009 Jun 13.

PMID:
19527729
23.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

24.

Current evaluation and treatment of patients with swallowing disorders.

Broniatowski M, Sonies BC, Rubin JS, Bradshaw CR, Spiegel JR, Bastian RW, Kelly JH.

Otolaryngol Head Neck Surg. 1999 Apr;120(4):464-73. Review.

PMID:
10187935
25.
26.

Clinical applications of high-definition microfocal radiography.

Buckland-Wright JC, Bradshaw CR.

Br J Radiol. 1989 Mar;62(735):209-17.

PMID:
2539218

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