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Items: 1 to 50 of 157

1.

Gamma Entrainment Binds Higher-Order Brain Regions and Offers Neuroprotection.

Adaikkan C, Middleton SJ, Marco A, Pao PC, Mathys H, Kim DN, Gao F, Young JZ, Suk HJ, Boyden ES, McHugh TJ, Tsai LH.

Neuron. 2019 Jun 5;102(5):929-943.e8. doi: 10.1016/j.neuron.2019.04.011. Epub 2019 May 7.

PMID:
31076275
2.

Architecting Discovery: A Model for How Engineers Can Help Invent Tools for Neuroscience.

Boyden ES, Marblestone AH.

Neuron. 2019 May 8;102(3):523-525. doi: 10.1016/j.neuron.2019.03.023.

PMID:
31071286
3.

PatcherBot: a single-cell electrophysiology robot for adherent cells and brain slices.

Kolb I, Landry CR, Yip MC, Lewallen CF, Stoy WA, Lee J, Felouzis A, Yang B, Boyden ES, Rozell CJ, Forest CR.

J Neural Eng. 2019 Apr 10;16(4):046003. doi: 10.1088/1741-2552/ab1834. [Epub ahead of print]

PMID:
30970335
4.

Autonomous patch-clamp robot for functional characterization of neurons in vivo: development and application to mouse visual cortex.

Holst GL, Stoy W, Yang B, Kolb I, Kodandaramaiah SB, Li L, Knoblich U, Zeng H, Haider B, Boyden ES, Forest CR.

J Neurophysiol. 2019 Jun 1;121(6):2341-2357. doi: 10.1152/jn.00738.2018. Epub 2019 Apr 10.

PMID:
30969898
5.

A theoretical analysis of single molecule protein sequencing via weak binding spectra.

Rodriques SG, Marblestone AH, Boyden ES.

PLoS One. 2019 Mar 28;14(3):e0212868. doi: 10.1371/journal.pone.0212868. eCollection 2019.

6.

Multi-sensory Gamma Stimulation Ameliorates Alzheimer's-Associated Pathology and Improves Cognition.

Martorell AJ, Paulson AL, Suk HJ, Abdurrob F, Drummond GT, Guan W, Young JZ, Kim DN, Kritskiy O, Barker SJ, Mangena V, Prince SM, Brown EN, Chung K, Boyden ES, Singer AC, Tsai LH.

Cell. 2019 Apr 4;177(2):256-271.e22. doi: 10.1016/j.cell.2019.02.014. Epub 2019 Mar 14.

PMID:
30879788
7.

Investigating the feasibility of channelrhodopsin variants for nanoscale optogenetics.

Stahlberg MA, Ramakrishnan C, Willig KI, Boyden ES, Deisseroth K, Dean C.

Neurophotonics. 2019 Jan;6(1):015007. doi: 10.1117/1.NPh.6.1.015007. Epub 2019 Feb 28.

PMID:
30854405
8.

A genetically encoded near-infrared fluorescent calcium ion indicator.

Qian Y, Piatkevich KD, Mc Larney B, Abdelfattah AS, Mehta S, Murdock MH, Gottschalk S, Molina RS, Zhang W, Chen Y, Wu J, Drobizhev M, Hughes TE, Zhang J, Schreiter ER, Shoham S, Razansky D, Boyden ES, Campbell RE.

Nat Methods. 2019 Feb;16(2):171-174. doi: 10.1038/s41592-018-0294-6. Epub 2019 Jan 21.

PMID:
30664778
9.

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu TL, Singh V, Graves A, Huynh GH, Zhao Y, Bogovic J, Colonell J, Ott CM, Zugates C, Tappan S, Rodriguez A, Mosaliganti KR, Sheu SH, Pasolli HA, Pang S, Xu CS, Megason SG, Hess H, Lippincott-Schwartz J, Hantman A, Rubin GM, Kirchhausen T, Saalfeld S, Aso Y, Boyden ES, Betzig E.

Science. 2019 Jan 18;363(6424). pii: eaau8302. doi: 10.1126/science.aau8302.

PMID:
30655415
10.

Melanopsin for precise optogenetic activation of astrocyte-neuron networks.

Mederos S, Hernández-Vivanco A, Ramírez-Franco J, Martín-Fernández M, Navarrete M, Yang A, Boyden ES, Perea G.

Glia. 2019 May;67(5):915-934. doi: 10.1002/glia.23580. Epub 2019 Jan 11.

PMID:
30632636
11.

Multidimensional screening yields channelrhodopsin variants having improved photocurrent and order-of-magnitude reductions in calcium and proton currents.

Cho YK, Park D, Yang A, Chen F, Chuong AS, Klapoetke NC, Boyden ES.

J Biol Chem. 2019 Mar 15;294(11):3806-3821. doi: 10.1074/jbc.RA118.006996. Epub 2019 Jan 4.

12.

Expansion microscopy: principles and uses in biological research.

Wassie AT, Zhao Y, Boyden ES.

Nat Methods. 2019 Jan;16(1):33-41. doi: 10.1038/s41592-018-0219-4. Epub 2018 Dec 20. Review.

PMID:
30573813
13.

Imaging cellular ultrastructures using expansion microscopy (U-ExM).

Gambarotto D, Zwettler FU, Le Guennec M, Schmidt-Cernohorska M, Fortun D, Borgers S, Heine J, Schloetel JG, Reuss M, Unser M, Boyden ES, Sauer M, Hamel V, Guichard P.

Nat Methods. 2019 Jan;16(1):71-74. doi: 10.1038/s41592-018-0238-1. Epub 2018 Dec 17.

14.

3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds.

Oran D, Rodriques SG, Gao R, Asano S, Skylar-Scott MA, Chen F, Tillberg PW, Marblestone AH, Boyden ES.

Science. 2018 Dec 14;362(6420):1281-1285. doi: 10.1126/science.aau5119.

15.

Automated Assessment of Loss of Consciousness Using Whisker And Paw Movements During Anesthetic Dosing in Head-Fixed Rodents.

An J, Flores FJ, Kodandaramaiah SB, Betta ID, Nikolaeva K, Boyden ES, Forest CR, Brown EN.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:730-733. doi: 10.1109/EMBC.2018.8512377.

PMID:
30440500
16.

Scalable, Modular Three-Dimensional Silicon Microelectrode Assembly via Electroless Plating.

Scholvin J, Zorzos A, Kinney J, Bernstein J, Moore-Kochlacs C, Kopell N, Fonstad C, Boyden ES.

Micromachines (Basel). 2018 Aug 30;9(9). pii: E436. doi: 10.3390/mi9090436.

17.

Translating Temporal Interference Brain Stimulation to Treat Neurological and Psychiatric Conditions.

Grossman N, Okun MS, Boyden ES.

JAMA Neurol. 2018 Nov 1;75(11):1307-1308. doi: 10.1001/jamaneurol.2018.2760. No abstract available.

PMID:
30264149
18.

Optogenetic induction of the schizophrenia-related endophenotype of ventral hippocampal hyperactivity causes rodent correlates of positive and cognitive symptoms.

Wolff AR, Bygrave AM, Sanderson DJ, Boyden ES, Bannerman DM, Kullmann DM, Kätzel D.

Sci Rep. 2018 Aug 27;8(1):12871. doi: 10.1038/s41598-018-31163-5.

19.

Expansion Microscopy: Protocols for Imaging Proteins and RNA in Cells and Tissues.

Asano SM, Gao R, Wassie AT, Tillberg PW, Chen F, Boyden ES.

Curr Protoc Cell Biol. 2018 Sep;80(1):e56. doi: 10.1002/cpcb.56. Epub 2018 Aug 2.

PMID:
30070431
20.

Author Correction: Gamma frequency entrainment attenuates amyloid load and modifies microglia.

Iaccarino HF, Singer AC, Martorell AJ, Rudenko A, Gao F, Gillingham TZ, Mathys H, Seo J, Kritskiy O, Abdurrob F, Adaikkan C, Canter RG, Rueda R, Brown EN, Boyden ES, Tsai LH.

Nature. 2018 Oct;562(7725):E1. doi: 10.1038/s41586-018-0351-4.

PMID:
30046102
21.

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.

Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, Yao Z, Fong O, Nguyen TN, Garren E, Lenz GH, Chavarha M, Pendergraft J, Harrington J, Hirokawa KE, Harris JA, Nicovich PR, McGraw MJ, Ollerenshaw DR, Smith KA, Baker CA, Ting JT, Sunkin SM, Lecoq J, Lin MZ, Boyden ES, Murphy GJ, da Costa NM, Waters J, Li L, Tasic B, Zeng H.

Cell. 2018 Jul 12;174(2):465-480.e22. doi: 10.1016/j.cell.2018.06.035.

PMID:
30007418
22.

Automated in vivo patch-clamp evaluation of extracellular multielectrode array spike recording capability.

Allen BD, Moore-Kochlacs C, Bernstein JG, Kinney JP, Scholvin J, Seoane LF, Chronopoulos C, Lamantia C, Kodandaramaiah SB, Tegmark M, Boyden ES.

J Neurophysiol. 2018 Nov 1;120(5):2182-2200. doi: 10.1152/jn.00650.2017. Epub 2018 Jul 11.

PMID:
29995597
23.

Expansion microscopy: enabling single cell analysis in intact biological systems.

Alon S, Huynh GH, Boyden ES.

FEBS J. 2019 Apr;286(8):1482-1494. doi: 10.1111/febs.14597. Epub 2018 Jul 9. Review.

PMID:
29938896
24.

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.

Migliori B, Datta MS, Dupre C, Apak MC, Asano S, Gao R, Boyden ES, Hermanson O, Yuste R, Tomer R.

BMC Biol. 2018 May 29;16(1):57. doi: 10.1186/s12915-018-0521-8.

25.

High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.

de Paz AM, Cybulski TR, Marblestone AH, Zamft BM, Church GM, Boyden ES, Kording KP, Tyo KEJ.

Nucleic Acids Res. 2018 Jul 27;46(13):e78. doi: 10.1093/nar/gky296.

26.

Publisher Correction: Temporally precise single-cell-resolution optogenetics.

Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V.

Nat Neurosci. 2018 Jun;21(6):896. doi: 10.1038/s41593-018-0097-1.

PMID:
29549318
27.

Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Sep;14(9):901. doi: 10.1038/s41589-018-0023-6.

PMID:
29520042
28.

A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Apr;14(4):352-360. doi: 10.1038/s41589-018-0004-9. Epub 2018 Feb 26. Erratum in: Nat Chem Biol. 2018 Mar 8;:.

29.

Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates.

Senova S, Poupon C, Dauguet J, Stewart HJ, Dugué GP, Jan C, Hosomi K, Ralph GS, Barnes L, Drouot X, Pouzat C, Mangin JF, Pain F, Doignon I, Aron-Badin R, Brouillet E, Boyden ES, Mitrophanous KA, Hantraye P, Palfi S.

Sci Rep. 2018 Feb 20;8(1):3362. doi: 10.1038/s41598-018-21486-8.

30.

Expansion microscopy: development and neuroscience applications.

Karagiannis ED, Boyden ES.

Curr Opin Neurobiol. 2018 Jun;50:56-63. doi: 10.1016/j.conb.2017.12.012. Epub 2018 Jan 6. Review.

31.

Multi-neuron intracellular recording in vivo via interacting autopatching robots.

Kodandaramaiah SB, Flores FJ, Holst GL, Singer AC, Han X, Brown EN, Boyden ES, Forest CR.

Elife. 2018 Jan 3;7. pii: e24656. doi: 10.7554/eLife.24656.

32.

Evidence for Long-Timescale Patterns of Synaptic Inputs in CA1 of Awake Behaving Mice.

Kolb I, Talei Franzesi G, Wang M, Kodandaramaiah SB, Forest CR, Boyden ES, Singer AC.

J Neurosci. 2018 Feb 14;38(7):1821-1834. doi: 10.1523/JNEUROSCI.1519-17.2017. Epub 2017 Dec 26.

33.

Temporally precise single-cell-resolution optogenetics.

Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V.

Nat Neurosci. 2017 Dec;20(12):1796-1806. doi: 10.1038/s41593-017-0018-8. Epub 2017 Nov 13. Erratum in: Nat Neurosci. 2018 Mar 16;:.

34.

Expansion microscopy of zebrafish for neuroscience and developmental biology studies.

Freifeld L, Odstrcil I, Förster D, Ramirez A, Gagnon JA, Randlett O, Costa EK, Asano S, Celiker OT, Gao R, Martin-Alarcon DA, Reginato P, Dick C, Chen L, Schoppik D, Engert F, Baier H, Boyden ES.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10799-E10808. doi: 10.1073/pnas.1706281114. Epub 2017 Nov 21.

35.

Wide-field three-photon excitation in biological samples.

Rowlands CJ, Park D, Bruns OT, Piatkevich KD, Fukumura D, Jain RK, Bawendi MG, Boyden ES, So PT.

Light Sci Appl. 2017 May 5;6:e16255. doi: 10.1038/lsa.2016.255.

36.

Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy.

Richter KN, Revelo NH, Seitz KJ, Helm MS, Sarkar D, Saleeb RS, D'Este E, Eberle J, Wagner E, Vogl C, Lazaro DF, Richter F, Coy-Vergara J, Coceano G, Boyden ES, Duncan RR, Hell SW, Lauterbach MA, Lehnart SE, Moser T, Outeiro TF, Rehling P, Schwappach B, Testa I, Zapiec B, Rizzoli SO.

EMBO J. 2018 Jan 4;37(1):139-159. doi: 10.15252/embj.201695709. Epub 2017 Nov 16.

37.

Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration.

Yoon YG, Dai P, Wohlwend J, Chang JB, Marblestone AH, Boyden ES.

Front Comput Neurosci. 2017 Oct 24;11:97. doi: 10.3389/fncom.2017.00097. eCollection 2017.

38.

Expansion Mini-Microscopy: An Enabling Alternative in Point-of-Care Diagnostics.

Zhang YS, Santiago GT, Alvarez MM, Schiff SJ, Boyden ES, Khademhosseini A.

Curr Opin Biomed Eng. 2017 Mar;1:45-53. doi: 10.1016/j.cobme.2017.03.001. Epub 2017 Mar 22.

39.

Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging.

Piatkevich KD, Suk HJ, Kodandaramaiah SB, Yoshida F, DeGennaro EM, Drobizhev M, Hughes TE, Desimone R, Boyden ES, Verkhusha VV.

Biophys J. 2017 Nov 21;113(10):2299-2309. doi: 10.1016/j.bpj.2017.09.007. Epub 2017 Oct 7.

40.

Large Volume, Behaviorally-relevant Illumination for Optogenetics in Non-human Primates.

Acker LC, Pino EN, Boyden ES, Desimone R.

J Vis Exp. 2017 Oct 3;(128). doi: 10.3791/56330.

41.

Submillisecond Optogenetic Control of Neuronal Firing with Two-Photon Holographic Photoactivation of Chronos.

Ronzitti E, Conti R, Zampini V, Tanese D, Foust AJ, Klapoetke N, Boyden ES, Papagiakoumou E, Emiliani V.

J Neurosci. 2017 Nov 1;37(44):10679-10689. doi: 10.1523/JNEUROSCI.1246-17.2017. Epub 2017 Oct 2.

42.

Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo.

Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES.

Neuron. 2017 Sep 27;96(1):244-245. doi: 10.1016/j.neuron.2017.09.012. No abstract available.

43.

Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues.

Wang Y, Woehrstein JB, Donoghue N, Dai M, Avendaño MS, Schackmann RCJ, Zoeller JJ, Wang SSH, Tillberg PW, Park D, Lapan SW, Boyden ES, Brugge JS, Kaeser PS, Church GM, Agasti SS, Jungmann R, Yin P.

Nano Lett. 2017 Oct 11;17(10):6131-6139. doi: 10.1021/acs.nanolett.7b02716. Epub 2017 Oct 2.

44.

Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo.

Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES.

Neuron. 2017 Aug 30;95(5):1037-1047.e11. doi: 10.1016/j.neuron.2017.08.011. Erratum in: Neuron. 2017 Sep 27;96(1):244-245.

45.

Green fluorescent genetically encoded calcium indicator based on calmodulin/M13-peptide from fungi.

Barykina NV, Subach OM, Piatkevich KD, Jung EE, Malyshev AY, Smirnov IV, Bogorodskiy AO, Borshchevskiy VI, Varizhuk AM, Pozmogova GE, Boyden ES, Anokhin KV, Enikolopov GN, Subach FV.

PLoS One. 2017 Aug 24;12(8):e0183757. doi: 10.1371/journal.pone.0183757. eCollection 2017.

46.

Sonofragmentation of Ultrathin 1D Nanomaterials.

Gao R, Gupta I, Boyden ES.

Part Part Syst Charact. 2017 Jan;34(1). pii: 1600339. doi: 10.1002/ppsc.201600339. Epub 2016 Dec 23.

47.

Fluidic microoptics with adjustable focusing and beam steering for single cell optogenetics.

Berry S, Redmond S, Robinson P, Thorsen T, Rothschild M, Boyden ES.

Opt Express. 2017 Jul 10;25(14):16825-16839. doi: 10.1364/OE.25.016825.

48.

Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy.

Zhao Y, Bucur O, Irshad H, Chen F, Weins A, Stancu AL, Oh EY, DiStasio M, Torous V, Glass B, Stillman IE, Schnitt SJ, Beck AH, Boyden ES.

Nat Biotechnol. 2017 Aug;35(8):757-764. doi: 10.1038/nbt.3892. Epub 2017 Jul 17.

49.

DNA binding strength increases the processivity and activity of a Y-Family DNA polymerase.

Wu J, de Paz A, Zamft BM, Marblestone AH, Boyden ES, Kording KP, Tyo KEJ.

Sci Rep. 2017 Jul 6;7(1):4756. doi: 10.1038/s41598-017-02578-3.

50.

Q&A: Expansion microscopy.

Gao R, Asano SM, Boyden ES.

BMC Biol. 2017 Jun 19;15(1):50. doi: 10.1186/s12915-017-0393-3.

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