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Items: 1 to 50 of 139

1.

Expansion Microscopy: Protocols for Imaging Proteins and RNA in Cells and Tissues.

Asano SM, Gao R, Wassie AT, Tillberg PW, Chen F, Boyden ES.

Curr Protoc Cell Biol. 2018 Aug 2:e56. doi: 10.1002/cpcb.56. [Epub ahead of print]

PMID:
30070431
2.

Author Correction: Gamma frequency entrainment attenuates amyloid load and modifies microglia.

Iaccarino HF, Singer AC, Martorell AJ, Rudenko A, Gao F, Gillingham TZ, Mathys H, Seo J, Kritskiy O, Abdurrob F, Adaikkan C, Canter RG, Rueda R, Brown EN, Boyden ES, Tsai LH.

Nature. 2018 Jul 25. doi: 10.1038/s41586-018-0351-4. [Epub ahead of print]

PMID:
30046102
3.

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.

Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, Yao Z, Fong O, Nguyen TN, Garren E, Lenz GH, Chavarha M, Pendergraft J, Harrington J, Hirokawa KE, Harris JA, Nicovich PR, McGraw MJ, Ollerenshaw DR, Smith KA, Baker CA, Ting JT, Sunkin SM, Lecoq J, Lin MZ, Boyden ES, Murphy GJ, da Costa NM, Waters J, Li L, Tasic B, Zeng H.

Cell. 2018 Jul 12;174(2):465-480.e22. doi: 10.1016/j.cell.2018.06.035.

PMID:
30007418
4.

Automated in vivo patch clamp evaluation of extracellular multielectrode array spike recording capability.

Allen BD, Moore-Kochlacs C, Bernstein JG, Kinney J, Scholvin J, Seoane L, Chronopoulos C, Lamantia C, Kodandaramaiah SB, Tegmark M, Boyden ES.

J Neurophysiol. 2018 Jul 11. doi: 10.1152/jn.00650.2017. [Epub ahead of print]

PMID:
29995597
5.

Expansion microscopy: enabling single cell analysis in intact biological systems.

Alon S, Huynh GH, Boyden ES.

FEBS J. 2018 Jun 25. doi: 10.1111/febs.14597. [Epub ahead of print] Review.

PMID:
29938896
6.

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.

Migliori B, Datta MS, Dupre C, Apak MC, Asano S, Gao R, Boyden ES, Hermanson O, Yuste R, Tomer R.

BMC Biol. 2018 May 29;16(1):57. doi: 10.1186/s12915-018-0521-8.

7.

High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.

de Paz AM, Cybulski TR, Marblestone AH, Zamft BM, Church GM, Boyden ES, Kording KP, Tyo KEJ.

Nucleic Acids Res. 2018 Jul 27;46(13):e78. doi: 10.1093/nar/gky296.

8.

Publisher Correction: Temporally precise single-cell-resolution optogenetics.

Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V.

Nat Neurosci. 2018 Jun;21(6):896. doi: 10.1038/s41593-018-0097-1.

PMID:
29549318
9.

Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Mar 8. doi: 10.1038/s41589-018-0023-6. [Epub ahead of print]

PMID:
29520042
10.

A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters.

Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES.

Nat Chem Biol. 2018 Apr;14(4):352-360. doi: 10.1038/s41589-018-0004-9. Epub 2018 Feb 26. Erratum in: Nat Chem Biol. 2018 Mar 8;:.

PMID:
29483642
11.

Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates.

Senova S, Poupon C, Dauguet J, Stewart HJ, Dugué GP, Jan C, Hosomi K, Ralph GS, Barnes L, Drouot X, Pouzat C, Mangin JF, Pain F, Doignon I, Aron-Badin R, Brouillet E, Boyden ES, Mitrophanous KA, Hantraye P, Palfi S.

Sci Rep. 2018 Feb 20;8(1):3362. doi: 10.1038/s41598-018-21486-8.

12.

Expansion microscopy: development and neuroscience applications.

Karagiannis ED, Boyden ES.

Curr Opin Neurobiol. 2018 Jun;50:56-63. doi: 10.1016/j.conb.2017.12.012. Epub 2018 Jan 6. Review.

PMID:
29316506
13.

Multi-neuron intracellular recording in vivo via interacting autopatching robots.

Kodandaramaiah SB, Flores FJ, Holst GL, Singer AC, Han X, Brown EN, Boyden ES, Forest CR.

Elife. 2018 Jan 3;7. pii: e24656. doi: 10.7554/eLife.24656.

14.

Evidence for Long-Timescale Patterns of Synaptic Inputs in CA1 of Awake Behaving Mice.

Kolb I, Talei Franzesi G, Wang M, Kodandaramaiah SB, Forest CR, Boyden ES, Singer AC.

J Neurosci. 2018 Feb 14;38(7):1821-1834. doi: 10.1523/JNEUROSCI.1519-17.2017. Epub 2017 Dec 26.

15.

Temporally precise single-cell-resolution optogenetics.

Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V.

Nat Neurosci. 2017 Dec;20(12):1796-1806. doi: 10.1038/s41593-017-0018-8. Epub 2017 Nov 13. Erratum in: Nat Neurosci. 2018 Mar 16;:.

16.

Expansion microscopy of zebrafish for neuroscience and developmental biology studies.

Freifeld L, Odstrcil I, Förster D, Ramirez A, Gagnon JA, Randlett O, Costa EK, Asano S, Celiker OT, Gao R, Martin-Alarcon DA, Reginato P, Dick C, Chen L, Schoppik D, Engert F, Baier H, Boyden ES.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10799-E10808. doi: 10.1073/pnas.1706281114. Epub 2017 Nov 21.

17.

Wide-field three-photon excitation in biological samples.

Rowlands CJ, Park D, Bruns OT, Piatkevich KD, Fukumura D, Jain RK, Bawendi MG, Boyden ES, So PT.

Light Sci Appl. 2017 May 5;6:e16255. doi: 10.1038/lsa.2016.255.

18.

Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy.

Richter KN, Revelo NH, Seitz KJ, Helm MS, Sarkar D, Saleeb RS, D'Este E, Eberle J, Wagner E, Vogl C, Lazaro DF, Richter F, Coy-Vergara J, Coceano G, Boyden ES, Duncan RR, Hell SW, Lauterbach MA, Lehnart SE, Moser T, Outeiro TF, Rehling P, Schwappach B, Testa I, Zapiec B, Rizzoli SO.

EMBO J. 2018 Jan 4;37(1):139-159. doi: 10.15252/embj.201695709. Epub 2017 Nov 16.

19.

Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration.

Yoon YG, Dai P, Wohlwend J, Chang JB, Marblestone AH, Boyden ES.

Front Comput Neurosci. 2017 Oct 24;11:97. doi: 10.3389/fncom.2017.00097. eCollection 2017.

20.

Expansion Mini-Microscopy: An Enabling Alternative in Point-of-Care Diagnostics.

Zhang YS, Santiago GT, Alvarez MM, Schiff SJ, Boyden ES, Khademhosseini A.

Curr Opin Biomed Eng. 2017 Mar;1:45-53. doi: 10.1016/j.cobme.2017.03.001. Epub 2017 Mar 22.

21.

Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging.

Piatkevich KD, Suk HJ, Kodandaramaiah SB, Yoshida F, DeGennaro EM, Drobizhev M, Hughes TE, Desimone R, Boyden ES, Verkhusha VV.

Biophys J. 2017 Nov 21;113(10):2299-2309. doi: 10.1016/j.bpj.2017.09.007. Epub 2017 Oct 7.

PMID:
29017728
22.

Large Volume, Behaviorally-relevant Illumination for Optogenetics in Non-human Primates.

Acker LC, Pino EN, Boyden ES, Desimone R.

J Vis Exp. 2017 Oct 3;(128). doi: 10.3791/56330.

PMID:
28994798
23.

Submillisecond Optogenetic Control of Neuronal Firing with Two-Photon Holographic Photoactivation of Chronos.

Ronzitti E, Conti R, Zampini V, Tanese D, Foust AJ, Klapoetke N, Boyden ES, Papagiakoumou E, Emiliani V.

J Neurosci. 2017 Nov 1;37(44):10679-10689. doi: 10.1523/JNEUROSCI.1246-17.2017. Epub 2017 Oct 2.

24.

Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo.

Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES.

Neuron. 2017 Sep 27;96(1):244-245. doi: 10.1016/j.neuron.2017.09.012. No abstract available.

25.

Rapid Sequential in Situ Multiplexing with DNA Exchange Imaging in Neuronal Cells and Tissues.

Wang Y, Woehrstein JB, Donoghue N, Dai M, Avendaño MS, Schackmann RCJ, Zoeller JJ, Wang SSH, Tillberg PW, Park D, Lapan SW, Boyden ES, Brugge JS, Kaeser PS, Church GM, Agasti SS, Jungmann R, Yin P.

Nano Lett. 2017 Oct 11;17(10):6131-6139. doi: 10.1021/acs.nanolett.7b02716. Epub 2017 Oct 2.

26.

Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo.

Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES.

Neuron. 2017 Aug 30;95(5):1037-1047.e11. doi: 10.1016/j.neuron.2017.08.011.

PMID:
28858614
27.

Green fluorescent genetically encoded calcium indicator based on calmodulin/M13-peptide from fungi.

Barykina NV, Subach OM, Piatkevich KD, Jung EE, Malyshev AY, Smirnov IV, Bogorodskiy AO, Borshchevskiy VI, Varizhuk AM, Pozmogova GE, Boyden ES, Anokhin KV, Enikolopov GN, Subach FV.

PLoS One. 2017 Aug 24;12(8):e0183757. doi: 10.1371/journal.pone.0183757. eCollection 2017.

28.

Sonofragmentation of Ultrathin 1D Nanomaterials.

Gao R, Gupta I, Boyden ES.

Part Part Syst Charact. 2017 Jan;34(1). pii: 1600339. doi: 10.1002/ppsc.201600339. Epub 2016 Dec 23.

29.

Fluidic microoptics with adjustable focusing and beam steering for single cell optogenetics.

Berry S, Redmond S, Robinson P, Thorsen T, Rothschild M, Boyden ES.

Opt Express. 2017 Jul 10;25(14):16825-16839. doi: 10.1364/OE.25.016825.

30.

Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy.

Zhao Y, Bucur O, Irshad H, Chen F, Weins A, Stancu AL, Oh EY, DiStasio M, Torous V, Glass B, Stillman IE, Schnitt SJ, Beck AH, Boyden ES.

Nat Biotechnol. 2017 Aug;35(8):757-764. doi: 10.1038/nbt.3892. Epub 2017 Jul 17.

31.

DNA binding strength increases the processivity and activity of a Y-Family DNA polymerase.

Wu J, de Paz A, Zamft BM, Marblestone AH, Boyden ES, Kording KP, Tyo KEJ.

Sci Rep. 2017 Jul 6;7(1):4756. doi: 10.1038/s41598-017-02578-3.

32.

Q&A: Expansion microscopy.

Gao R, Asano SM, Boyden ES.

BMC Biol. 2017 Jun 19;15(1):50. doi: 10.1186/s12915-017-0393-3.

33.

A novel flexible cuff-like microelectrode for dual purpose, acute and chronic electrical interfacing with the mouse cervical vagus nerve.

Caravaca AS, Tsaava T, Goldman L, Silverman H, Riggott G, Chavan SS, Bouton C, Tracey KJ, Desimone R, Boyden ES, Sohal HS, Olofsson PS.

J Neural Eng. 2017 Dec;14(6):066005. doi: 10.1088/1741-2552/aa7a42.

PMID:
28628030
34.

Robotic navigation to subcortical neural tissue for intracellular electrophysiology in vivo.

Stoy WA, Kolb I, Holst GL, Liew Y, Pala A, Yang B, Boyden ES, Stanley GB, Forest CR.

J Neurophysiol. 2017 Aug 1;118(2):1141-1150. doi: 10.1152/jn.00117.2017. Epub 2017 Jun 7.

35.

The promise of organ and tissue preservation to transform medicine.

Giwa S, Lewis JK, Alvarez L, Langer R, Roth AE, Church GM, Markmann JF, Sachs DH, Chandraker A, Wertheim JA, Rothblatt M, Boyden ES, Eidbo E, Lee WPA, Pomahac B, Brandacher G, Weinstock DM, Elliott G, Nelson D, Acker JP, Uygun K, Schmalz B, Weegman BP, Tocchio A, Fahy GM, Storey KB, Rubinsky B, Bischof J, Elliott JAW, Woodruff TK, Morris GJ, Demirci U, Brockbank KGM, Woods EJ, Ben RN, Baust JG, Gao D, Fuller B, Rabin Y, Kravitz DC, Taylor MJ, Toner M.

Nat Biotechnol. 2017 Jun 7;35(6):530-542. doi: 10.1038/nbt.3889. Review.

36.

Noninvasive Deep Brain Stimulation via Temporally Interfering Electric Fields.

Grossman N, Bono D, Dedic N, Kodandaramaiah SB, Rudenko A, Suk HJ, Cassara AM, Neufeld E, Kuster N, Tsai LH, Pascual-Leone A, Boyden ES.

Cell. 2017 Jun 1;169(6):1029-1041.e16. doi: 10.1016/j.cell.2017.05.024.

37.

Mesoscale-duration activated states gate spiking in response to fast rises in membrane voltage in the awake brain.

Singer AC, Talei Franzesi G, Kodandaramaiah SB, Flores FJ, Cohen JD, Lee AK, Borgers C, Forest CR, Kopell NJ, Boyden ES.

J Neurophysiol. 2017 Aug 1;118(2):1270-1291. doi: 10.1152/jn.00116.2017. Epub 2017 May 31.

38.

Emerging Trends in Micro- and Nanoscale Technologies in Medicine: From Basic Discoveries to Translation.

Alvarez MM, Aizenberg J, Analoui M, Andrews AM, Bisker G, Boyden ES, Kamm RD, Karp JM, Mooney DJ, Oklu R, Peer D, Stolzoff M, Strano MS, Trujillo-de Santiago G, Webster TJ, Weiss PS, Khademhosseini A.

ACS Nano. 2017 Jun 27;11(6):5195-5214. doi: 10.1021/acsnano.7b01493. Epub 2017 May 19.

PMID:
28524668
39.

Nucleotide-time alignment for molecular recorders.

Cybulski TR, Boyden ES, Church GM, Tyo KEJ, Kording KP.

PLoS Comput Biol. 2017 May 1;13(5):e1005483. doi: 10.1371/journal.pcbi.1005483. eCollection 2017 May.

40.

Cell diversity and network dynamics in photosensitive human brain organoids.

Quadrato G, Nguyen T, Macosko EZ, Sherwood JL, Min Yang S, Berger DR, Maria N, Scholvin J, Goldman M, Kinney JP, Boyden ES, Lichtman JW, Williams ZM, McCarroll SA, Arlotta P.

Nature. 2017 May 4;545(7652):48-53. doi: 10.1038/nature22047. Epub 2017 Apr 26.

41.

Engineering genetic circuit interactions within and between synthetic minimal cells.

Adamala KP, Martin-Alarcon DA, Guthrie-Honea KR, Boyden ES.

Nat Chem. 2017 May;9(5):431-439. doi: 10.1038/nchem.2644. Epub 2016 Nov 14.

42.

Iterative expansion microscopy.

Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES.

Nat Methods. 2017 Jun;14(6):593-599. doi: 10.1038/nmeth.4261. Epub 2017 Apr 17.

43.

Heterogeneous neural amplifier integration for scalable extracellular microelectrodes.

Scholvin J, Kinney JP, Bernstein JG, Moore-Kochlacs C, Kopell NJ, Fonstad CG, Boyden ES.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:2789-2793. doi: 10.1109/EMBC.2016.7591309.

PMID:
28268897
44.

High-resolution imaging of cellular dopamine efflux using a fluorescent nanosensor array.

Kruss S, Salem DP, Vuković L, Lima B, Vander Ende E, Boyden ES, Strano MS.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):1789-1794. doi: 10.1073/pnas.1613541114. Epub 2017 Feb 8.

45.

Influenza virus exploits tunneling nanotubes for cell-to-cell spread.

Kumar A, Kim JH, Ranjan P, Metcalfe MG, Cao W, Mishina M, Gangappa S, Guo Z, Boyden ES, Zaki S, York I, García-Sastre A, Shaw M, Sambhara S.

Sci Rep. 2017 Jan 6;7:40360. doi: 10.1038/srep40360.

46.

Gamma frequency entrainment attenuates amyloid load and modifies microglia.

Iaccarino HF, Singer AC, Martorell AJ, Rudenko A, Gao F, Gillingham TZ, Mathys H, Seo J, Kritskiy O, Abdurrob F, Adaikkan C, Canter RG, Rueda R, Brown EN, Boyden ES, Tsai LH.

Nature. 2016 Dec 7;540(7632):230-235. doi: 10.1038/nature20587. Erratum in: Nature. 2018 Jul 25;:.

47.

Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks.

Zhuo JM, Tseng HA, Desai M, Bucklin ME, Mohammed AI, Robinson NT, Boyden ES, Rangel LM, Jasanoff AP, Gritton HJ, Han X.

Elife. 2016 Dec 3;5. pii: e22429. doi: 10.7554/eLife.22429.

48.

FEF inactivation with improved optogenetic methods.

Acker L, Pino EN, Boyden ES, Desimone R.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7297-E7306. Epub 2016 Nov 2.

49.

Optogenetic activation of dopamine neurons in the ventral tegmental area induces reanimation from general anesthesia.

Taylor NE, Van Dort CJ, Kenny JD, Pei J, Guidera JA, Vlasov KY, Lee JT, Boyden ES, Brown EN, Solt K.

Proc Natl Acad Sci U S A. 2016 Oct 24. pii: 201614340. [Epub ahead of print]

50.

Striosome-dendron bouquets highlight a unique striatonigral circuit targeting dopamine-containing neurons.

Crittenden JR, Tillberg PW, Riad MH, Shima Y, Gerfen CR, Curry J, Housman DE, Nelson SB, Boyden ES, Graybiel AM.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11318-11323. Epub 2016 Sep 19.

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