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VDJbase: an adaptive immune receptor genotype and haplotype database.

Omer A, Shemesh O, Peres A, Polak P, Shepherd AJ, Watson CT, Boyd SD, Collins AM, Lees W, Yaari G.

Nucleic Acids Res. 2019 Oct 11. pii: gkz872. doi: 10.1093/nar/gkz872. [Epub ahead of print]


Predictors of Device-Related Complications After Exchange of the Pressure Regulating Balloon in Men with an Artificial Urinary Sphincter.

Loh-Doyle JC, Nazemi A, Ashrafi A, Doumanian LR, Ginsberg DA, Boyd SD.

Urology. 2019 Oct 1. pii: S0090-4295(19)30855-6. doi: 10.1016/j.urology.2019.09.026. [Epub ahead of print]


Sustained outcomes in oral immunotherapy for peanut allergy (POISED study): a large, randomised, double-blind, placebo-controlled, phase 2 study.

Chinthrajah RS, Purington N, Andorf S, Long A, O'Laughlin KL, Lyu SC, Manohar M, Boyd SD, Tibshirani R, Maecker H, Plaut M, Mukai K, Tsai M, Desai M, Galli SJ, Nadeau KC.

Lancet. 2019 Oct 19;394(10207):1437-1449. doi: 10.1016/S0140-6736(19)31793-3. Epub 2019 Sep 12.


Recent progress in the analysis of αβT cell and B cell receptor repertoires.

Davis MM, Boyd SD.

Curr Opin Immunol. 2019 Aug;59:109-114. doi: 10.1016/j.coi.2019.05.012. Epub 2019 Jul 18. Review.


Copper-zinc superoxide dismutase (Sod1) activation terminates interaction between its copper chaperone (Ccs) and the cytosolic metal-binding domain of the copper importer Ctr1.

Skopp A, Boyd SD, Ullrich MS, Liu L, Winkler DD.

Biometals. 2019 Aug;32(4):695-705. doi: 10.1007/s10534-019-00206-3. Epub 2019 Jul 10.


Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection.

Davis CW, Jackson KJL, McElroy AK, Halfmann P, Huang J, Chennareddy C, Piper AE, Leung Y, Albariño CG, Crozier I, Ellebedy AH, Sidney J, Sette A, Yu T, Nielsen SCA, Goff AJ, Spiropoulou CF, Saphire EO, Cavet G, Kawaoka Y, Mehta AK, Glass PJ, Boyd SD, Ahmed R.

Cell. 2019 May 30;177(6):1566-1582.e17. doi: 10.1016/j.cell.2019.04.036. Epub 2019 May 16.


Cobicistat-containing antiretroviral regimens are not recommended during pregnancy: viewpoint.

Boyd SD, Sampson MR, Viswanathan P, Struble KA, Arya V, Sherwat AI.

AIDS. 2019 May 1;33(6):1089-1093. doi: 10.1097/QAD.0000000000002163.


New technologies and applications in infant B cell immunology.

Nielsen SCA, Boyd SD.

Curr Opin Immunol. 2019 Apr;57:53-57. doi: 10.1016/j.coi.2018.12.005. Epub 2019 Feb 27. Review.


Shaping of infant B cell receptor repertoires by environmental factors and infectious disease.

Nielsen SCA, Roskin KM, Jackson KJL, Joshi SA, Nejad P, Lee JY, Wagar LE, Pham TD, Hoh RA, Nguyen KD, Tsunemoto HY, Patel SB, Tibshirani R, Ley C, Davis MM, Parsonnet J, Boyd SD.

Sci Transl Med. 2019 Feb 27;11(481). pii: eaat2004. doi: 10.1126/scitranslmed.aat2004.


"The Defined Toxin-binding Region of the Cadherin G-protein Coupled Receptor, BT-R1, for the Active Cry1Ab Toxin of Bacillus thuringiensis".

Liu L, Boyd SD, Bulla LA Jr, Winkler DD.

J Proteomics Bioinform. 2018;11(11):201-210. doi: 10.4172/0974-276X.1000487. Epub 2018 Dec 11.


Dual Prosthetic Implantation After Radical Cystoprostatectomy and Neobladder: Outcomes of the Inflatable Penile Prosthesis and Artificial Urinary Sphincter in Bladder Cancer Survivors.

Loh-Doyle JC, Ashrafi A, Nazemi A, Ghodoussipour S, Thompson E, Wayne K, Boyd SD.

Urology. 2019 May;127:127-132. doi: 10.1016/j.urology.2019.01.010. Epub 2019 Jan 18.


Baseline Gastrointestinal Eosinophilia Is Common in Oral Immunotherapy Subjects With IgE-Mediated Peanut Allergy.

Wright BL, Fernandez-Becker NQ, Kambham N, Purington N, Tupa D, Zhang W, Rank MA, Kita H, Shim KP, Bunning BJ, Doyle AD, Jacobsen EA, Boyd SD, Tsai M, Maecker H, Manohar M, Galli SJ, Nadeau KC, Chinthrajah RS.

Front Immunol. 2018 Nov 22;9:2624. doi: 10.3389/fimmu.2018.02624. eCollection 2018.


The yeast copper chaperone for copper-zinc superoxide dismutase (CCS1) is a multifunctional chaperone promoting all levels of SOD1 maturation.

Boyd SD, Calvo JS, Liu L, Ullrich MS, Skopp A, Meloni G, Winkler DD.

J Biol Chem. 2019 Feb 8;294(6):1956-1966. doi: 10.1074/jbc.RA118.005283. Epub 2018 Dec 10.


Global fingerprint of humans on the distribution of Bartonella bacteria in mammals.

Frank HK, Boyd SD, Hadly EA.

PLoS Negl Trop Dis. 2018 Nov 15;12(11):e0006865. doi: 10.1371/journal.pntd.0006865. eCollection 2018 Nov.


Apneic oxygenation to prevent oxyhemoglobin desaturation during rapid sequence intubation in a pediatric emergency department.

Overmann KM, Boyd SD, Zhang Y, Kerrey BT.

Am J Emerg Med. 2019 Aug;37(8):1416-1421. doi: 10.1016/j.ajem.2018.10.030. Epub 2018 Oct 18.


Gut Mucosal Antibody Responses and Implications for Food Allergy.

Hoh RA, Boyd SD.

Front Immunol. 2018 Sep 27;9:2221. doi: 10.3389/fimmu.2018.02221. eCollection 2018. Review.


Mechanical failure rates of artificial urinary sphincter components: Is the 3.5-cm urethral cuff at higher risk?

Loh-Doyle JC, Hartman N, Nazemi A, Wayne K, Doumanian LR, Ginsberg DA, Boyd SD.

Neurourol Urodyn. 2019 Jan;38(1):187-192. doi: 10.1002/nau.23825. Epub 2018 Sep 24.


Quantifying the Interaction between Copper-Zinc Superoxide Dismutase (Sod1) and its Copper Chaperone (Ccs1).

Boyd SD, Liu L, Bulla L, Winkler DD.

J Proteomics Bioinform. 2018;11(4). pii: 473. doi: 10.4172/jpb.1000473. Epub 2018 May 14.


Human adaptive immune receptor repertoire analysis-Past, present, and future.

Nielsen SCA, Boyd SD.

Immunol Rev. 2018 Jul;284(1):9-23. doi: 10.1111/imr.12667. Review.


Three-Piece Inflatable Penile Prosthesis Placement Following Pelvic Radiation: Technical Considerations and Contemporary Outcomes.

Loh-Doyle J, Patil MB, Nakhoda Z, Nassiri N, Yip W, Wayne K, Doumanian L, Boyd SD.

J Sex Med. 2018 Jul;15(7):1049-1054. doi: 10.1016/j.jsxm.2018.04.634. Epub 2018 May 3.


Paratesticular Serous Papillary Carcinoma of High Grade and Malignant Potential: A Rare Case with a Role for Adjuvant Therapy.

Lifton J, Ghodoussipour S, Xiao GQ, Dorff T, Loh-Doyle J, Boyd SD.

Cureus. 2018 Feb 13;10(2):e2188. doi: 10.7759/cureus.2188.


HCV genotype 4, 5 and 6: Distribution of viral subtypes and sustained virologic response rates in clinical trials of approved direct-acting antiviral regimens.

Boyd SD, Harrington P, Komatsu TE, Naeger LK, Chan-Tack K, Murray J, Birnkrant D, Struble K.

J Viral Hepat. 2018 Aug;25(8):969-975. doi: 10.1111/jvh.12896. Epub 2018 May 8.


3-Piece Inflatable Penile Prosthesis Placement Following Radical Cystoprostatectomy and Urinary Diversion: Technique and Outcomes.

Loh-Doyle J, Patil MB, Sawkar H, Wayne K, Boyd SD.

J Sex Med. 2018 Jun;15(6):907-913. doi: 10.1016/j.jsxm.2018.01.014. Epub 2018 Feb 13.


Dynamics of Viral and Host Immune Cell MicroRNA Expression during Acute Infectious Mononucleosis.

Kaul V, Weinberg KI, Boyd SD, Bernstein D, Esquivel CO, Martinez OM, Krams SM.

Front Microbiol. 2018 Jan 15;8:2666. doi: 10.3389/fmicb.2017.02666. eCollection 2017.


Food allergy and omics.

Dhondalay GK, Rael E, Acharya S, Zhang W, Sampath V, Galli SJ, Tibshirani R, Boyd SD, Maecker H, Nadeau KC, Andorf S.

J Allergy Clin Immunol. 2018 Jan;141(1):20-29. doi: 10.1016/j.jaci.2017.11.007. Review.


Immune monitoring for precision medicine in allergy and asthma.

Boyd SD, Hoh RA, Nadeau KC, Galli SJ.

Curr Opin Immunol. 2017 Oct;48:82-91. doi: 10.1016/j.coi.2017.08.007. Epub 2017 Sep 7. Review.


Fluorescent Functionalization across Quaternary Structure in a Virus-like Particle.

Chen Z, Boyd SD, Calvo JS, Murray KW, Mejia GL, Benjamin CE, Welch RP, Winkler DD, Meloni G, D'Arcy S, Gassensmith JJ.

Bioconjug Chem. 2017 Sep 20;28(9):2277-2283. doi: 10.1021/acs.bioconjchem.7b00305. Epub 2017 Aug 22.


Oxygen-dependent activation of Cu,Zn-superoxide dismutase-1.

M Fetherolf M, Boyd SD, Winkler DD, Winge DR.

Metallomics. 2017 Aug 16;9(8):1047-1059. doi: 10.1039/c6mt00298f. Review.


Identifying specificity groups in the T cell receptor repertoire.

Glanville J, Huang H, Nau A, Hatton O, Wagar LE, Rubelt F, Ji X, Han A, Krams SM, Pettus C, Haas N, Arlehamn CSL, Sette A, Boyd SD, Scriba TJ, Martinez OM, Davis MM.

Nature. 2017 Jul 6;547(7661):94-98. doi: 10.1038/nature22976. Epub 2017 Jun 21.


Copper-zinc superoxide dismutase is activated through a sulfenic acid intermediate at a copper ion entry site.

Fetherolf MM, Boyd SD, Taylor AB, Kim HJ, Wohlschlegel JA, Blackburn NJ, Hart PJ, Winge DR, Winkler DD.

J Biol Chem. 2017 Jul 21;292(29):12025-12040. doi: 10.1074/jbc.M117.775981. Epub 2017 May 22.


High-fat diet induces systemic B-cell repertoire changes associated with insulin resistance.

Pham TD, Chng MHY, Roskin KM, Jackson KJL, Nguyen KD, Glanville J, Lee JY, Engleman EG, Boyd SD.

Mucosal Immunol. 2017 Nov;10(6):1468-1479. doi: 10.1038/mi.2017.25. Epub 2017 Apr 19.


US FDA Perspective on Elbasvir/Grazoprevir Treatment for Patients with Chronic Hepatitis C Virus Genotype 1 or 4 Infection.

Boyd SD, Tracy L, Komatsu TE, Harrington PR, Viswanathan P, Murray J, Sherwat A.

Clin Drug Investig. 2017 Apr;37(4):317-326. doi: 10.1007/s40261-017-0492-5.


Amino Acid Changes in the HIV-1 gp41 Membrane Proximal Region Control Virus Neutralization Sensitivity.

Bradley T, Trama A, Tumba N, Gray E, Lu X, Madani N, Jahanbakhsh F, Eaton A, Xia SM, Parks R, Lloyd KE, Sutherland LL, Scearce RM, Bowman CM, Barnett S, Abdool-Karim SS, Boyd SD, Melillo B, Smith AB 3rd, Sodroski J, Kepler TB, Alam SM, Gao F, Bonsignori M, Liao HX, Moody MA, Montefiori D, Santra S, Morris L, Haynes BF.

EBioMedicine. 2016 Oct;12:196-207. doi: 10.1016/j.ebiom.2016.08.045. Epub 2016 Aug 31.


Defining antigen-specific plasmablast and memory B cell subsets in human blood after viral infection or vaccination.

Ellebedy AH, Jackson KJ, Kissick HT, Nakaya HI, Davis CW, Roskin KM, McElroy AK, Oshansky CM, Elbein R, Thomas S, Lyon GM, Spiropoulou CF, Mehta AK, Thomas PG, Boyd SD, Ahmed R.

Nat Immunol. 2016 Oct;17(10):1226-34. doi: 10.1038/ni.3533. Epub 2016 Aug 15.


Broadening Horizons: New Antibodies Against Influenza.

Jackson KJL, Boyd SD.

Cell. 2016 Jul 28;166(3):532-533. doi: 10.1016/j.cell.2016.07.023.


Deep sequencing and human antibody repertoire analysis.

Boyd SD, Crowe JE Jr.

Curr Opin Immunol. 2016 Jun;40:103-9. doi: 10.1016/j.coi.2016.03.008. Epub 2016 Apr 8. Review.


Molecular and cellular mechanisms of food allergy and food tolerance.

Chinthrajah RS, Hernandez JD, Boyd SD, Galli SJ, Nadeau KC.

J Allergy Clin Immunol. 2016 Apr;137(4):984-997. doi: 10.1016/j.jaci.2016.02.004. Review.


Diversification of the antigen-specific T cell receptor repertoire after varicella zoster vaccination.

Qi Q, Cavanagh MM, Le Saux S, NamKoong H, Kim C, Turgano E, Liu Y, Wang C, Mackey S, Swan GE, Dekker CL, Olshen RA, Boyd SD, Weyand CM, Tian L, Goronzy JJ.

Sci Transl Med. 2016 Mar 30;8(332):332ra46. doi: 10.1126/scitranslmed.aaf1725.


Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody.

Bonsignori M, Zhou T, Sheng Z, Chen L, Gao F, Joyce MG, Ozorowski G, Chuang GY, Schramm CA, Wiehe K, Alam SM, Bradley T, Gladden MA, Hwang KK, Iyengar S, Kumar A, Lu X, Luo K, Mangiapani MC, Parks RJ, Song H, Acharya P, Bailer RT, Cao A, Druz A, Georgiev IS, Kwon YD, Louder MK, Zhang B, Zheng A, Hill BJ, Kong R, Soto C; NISC Comparative Sequencing Program, Mullikin JC, Douek DC, Montefiori DC, Moody MA, Shaw GM, Hahn BH, Kelsoe G, Hraber PT, Korber BT, Boyd SD, Fire AZ, Kepler TB, Shapiro L, Ward AB, Mascola JR, Liao HX, Kwong PD, Haynes BF.

Cell. 2016 Apr 7;165(2):449-63. doi: 10.1016/j.cell.2016.02.022. Epub 2016 Mar 3.


Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets.

Ryan JF, Hovde R, Glanville J, Lyu SC, Ji X, Gupta S, Tibshirani RJ, Jay DC, Boyd SD, Chinthrajah RS, Davis MM, Galli SJ, Maecker HT, Nadeau KC.

Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):E1286-95. doi: 10.1073/pnas.1520180113. Epub 2016 Jan 25.


DJ Pairing during VDJ Recombination Shows Positional Biases That Vary among Individuals with Differing IGHD Locus Immunogenotypes.

Kidd MJ, Jackson KJ, Boyd SD, Collins AM.

J Immunol. 2016 Feb 1;196(3):1158-64. doi: 10.4049/jimmunol.1501401. Epub 2015 Dec 23.


Persistence and evolution of allergen-specific IgE repertoires during subcutaneous specific immunotherapy.

Levin M, King JJ, Glanville J, Jackson KJ, Looney TJ, Hoh RA, Mari A, Andersson M, Greiff L, Fire AZ, Boyd SD, Ohlin M.

J Allergy Clin Immunol. 2016 May;137(5):1535-44. doi: 10.1016/j.jaci.2015.09.027. Epub 2015 Nov 11.


Laboratory and Data Analysis Methods for Characterization of Human B Cell Repertoires by High-Throughput DNA Sequencing.

Wang C, Liu Y, Roskin KM, Jackson KJ, Boyd SD.

Methods Mol Biol. 2015;1343:219-33. doi: 10.1007/978-1-4939-2963-4_17.


IgH sequences in common variable immune deficiency reveal altered B cell development and selection.

Roskin KM, Simchoni N, Liu Y, Lee JY, Seo K, Hoh RA, Pham T, Park JH, Furman D, Dekker CL, Davis MM, James JA, Nadeau KC, Cunningham-Rundles C, Boyd SD.

Sci Transl Med. 2015 Aug 26;7(302):302ra135. doi: 10.1126/scitranslmed.aab1216.


Human B-cell isotype switching origins of IgE.

Looney TJ, Lee JY, Roskin KM, Hoh RA, King J, Glanville J, Liu Y, Pham TD, Dekker CL, Davis MM, Boyd SD.

J Allergy Clin Immunol. 2016 Feb;137(2):579-586.e7. doi: 10.1016/j.jaci.2015.07.014. Epub 2015 Aug 22.


Single B-cell deconvolution of peanut-specific antibody responses in allergic patients.

Hoh RA, Joshi SA, Liu Y, Wang C, Roskin KM, Lee JY, Pham T, Looney TJ, Jackson KJL, Dixit VP, King J, Lyu SC, Jenks J, Hamilton RG, Nadeau KC, Boyd SD.

J Allergy Clin Immunol. 2016 Jan;137(1):157-167. doi: 10.1016/j.jaci.2015.05.029. Epub 2015 Jul 4.


Design of a Genomics Curriculum: Competencies for Practicing Pathologists.

Laudadio J, McNeal JL, Boyd SD, Le LP, Lockwood C, McCloskey CB, Sharma G, Voelkerding KV, Haspel RL.

Arch Pathol Lab Med. 2015 Jul;139(7):894-900. doi: 10.5858/arpa.2014-0253-CP.


High-Throughput DNA Sequencing Analysis of Antibody Repertoires.

Boyd SD, Joshi SA.

Microbiol Spectr. 2014 Oct;2(5). doi: 10.1128/microbiolspec.AID-0017-2014. Review.


Predicting vaccine responsiveness.

Boyd SD, Jackson KJL.

Cell Host Microbe. 2015 Mar 11;17(3):301-307. doi: 10.1016/j.chom.2015.02.015. Review.


B-cell repertoire responses to varicella-zoster vaccination in human identical twins.

Wang C, Liu Y, Cavanagh MM, Le Saux S, Qi Q, Roskin KM, Looney TJ, Lee JY, Dixit V, Dekker CL, Swan GE, Goronzy JJ, Boyd SD.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):500-5. doi: 10.1073/pnas.1415875112. Epub 2014 Dec 22.

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