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Items: 1 to 50 of 119

1.

Effects of salinity on microbialite-associated production in Great Salt Lake, Utah.

Lindsay MR, Johnston RE, Baxter BK, Boyd ES.

Ecology. 2019 Jan 13:e02611. doi: 10.1002/ecy.2611. [Epub ahead of print]

PMID:
30636291
2.

Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs.

Fortney NW, He S, Converse BJ, Boyd ES, Roden EE.

Front Microbiol. 2018 Sep 7;9:2075. doi: 10.3389/fmicb.2018.02075. eCollection 2018.

3.

Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes.

Poudel S, Dunham EC, Lindsay MR, Amenabar MJ, Fones EM, Colman DR, Boyd ES.

Front Microbiol. 2018 Aug 3;9:1762. doi: 10.3389/fmicb.2018.01762. eCollection 2018.

4.

Subsurface processes influence oxidant availability and chemoautotrophic hydrogen metabolism in Yellowstone hot springs.

Lindsay MR, Amenabar MJ, Fecteau KM, Debes RV 2nd, Fernandes Martins MC, Fristad KE, Xu H, Hoehler TM, Shock EL, Boyd ES.

Geobiology. 2018 Nov;16(6):674-692. doi: 10.1111/gbi.12308. Epub 2018 Jul 23.

PMID:
30035368
5.

Electron acceptor availability alters carbon and energy metabolism in a thermoacidophile.

Amenabar MJ, Colman DR, Poudel S, Roden EE, Boyd ES.

Environ Microbiol. 2018 Jul;20(7):2523-2537. doi: 10.1111/1462-2920.14270. Epub 2018 Aug 16.

PMID:
29749696
6.

The path of electron transfer to nitrogenase in a phototrophic alpha-proteobacterium.

Fixen KR, Pal Chowdhury N, Martinez-Perez M, Poudel S, Boyd ES, Harwood CS.

Environ Microbiol. 2018 Jul;20(7):2500-2508. doi: 10.1111/1462-2920.14262. Epub 2018 Jul 26.

PMID:
29708646
7.

Mechanisms of Mineral Substrate Acquisition in a Thermoacidophile.

Amenabar MJ, Boyd ES.

Appl Environ Microbiol. 2018 May 31;84(12). pii: e00334-18. doi: 10.1128/AEM.00334-18. Print 2018 Jun 15.

8.

Stable Isotope Probing for Microbial Iron Reduction in Chocolate Pots Hot Spring, Yellowstone National Park.

Fortney NW, He S, Kulkarni A, Friedrich MW, Holz C, Boyd ES, Roden EE.

Appl Environ Microbiol. 2018 May 17;84(11). pii: e02894-17. doi: 10.1128/AEM.02894-17. Print 2018 Jun 1.

9.

Electron transfer to nitrogenase in different genomic and metabolic backgrounds.

Poudel S, Colman DR, Fixen KR, Ledbetter RN, Zheng Y, Pence N, Seefeldt LC, Peters JW, Harwood CS, Boyd ES.

J Bacteriol. 2018 Feb 26. pii: JB.00757-17. doi: 10.1128/JB.00757-17. [Epub ahead of print]

10.

A pathway for biological methane production using bacterial iron-only nitrogenase.

Zheng Y, Harris DF, Yu Z, Fu Y, Poudel S, Ledbetter RN, Fixen KR, Yang ZY, Boyd ES, Lidstrom ME, Seefeldt LC, Harwood CS.

Nat Microbiol. 2018 Mar;3(3):281-286. doi: 10.1038/s41564-017-0091-5. Epub 2018 Jan 15.

PMID:
29335552
11.

Geobiological feedbacks and the evolution of thermoacidophiles.

Colman DR, Poudel S, Hamilton TL, Havig JR, Selensky MJ, Shock EL, Boyd ES.

ISME J. 2018 Jan;12(1):225-236. doi: 10.1038/ismej.2017.162. Epub 2017 Oct 13.

12.

H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle.

Berry L, Poudel S, Tokmina-Lukaszewska M, Colman DR, Nguyen DMN, Schut GJ, Adams MWW, Peters JW, Boyd ES, Bothner B.

Biochim Biophys Acta Gen Subj. 2018 Jan;1862(1):9-17. doi: 10.1016/j.bbagen.2017.10.002. Epub 2017 Oct 6.

PMID:
28993252
13.

Defining Electron Bifurcation in the Electron-Transferring Flavoprotein Family.

Garcia Costas AM, Poudel S, Miller AF, Schut GJ, Ledbetter RN, Fixen KR, Seefeldt LC, Adams MWW, Harwood CS, Boyd ES, Peters JW.

J Bacteriol. 2017 Oct 3;199(21). pii: e00440-17. doi: 10.1128/JB.00440-17. Print 2017 Nov 1.

14.

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs.

Carere CR, Hards K, Houghton KM, Power JF, McDonald B, Collet C, Gapes DJ, Sparling R, Boyd ES, Cook GM, Greening C, Stott MB.

ISME J. 2017 Nov;11(11):2599-2610. doi: 10.1038/ismej.2017.112. Epub 2017 Aug 4.

15.

The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5.

Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW.

Front Microbiol. 2017 Jul 12;8:1305. doi: 10.3389/fmicb.2017.01305. eCollection 2017.

16.

Two functionally distinct NADP+-dependent ferredoxin oxidoreductases maintain the primary redox balance of Pyrococcus furiosus.

Nguyen DMN, Schut GJ, Zadvornyy OA, Tokmina-Lukaszewska M, Poudel S, Lipscomb GL, Adams LA, Dinsmore JT, Nixon WJ, Boyd ES, Bothner B, Peters JW, Adams MWW.

J Biol Chem. 2017 Sep 1;292(35):14603-14616. doi: 10.1074/jbc.M117.794172. Epub 2017 Jul 13.

17.

The deep, hot biosphere: Twenty-five years of retrospection.

Colman DR, Poudel S, Stamps BW, Boyd ES, Spear JR.

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):6895-6903. doi: 10.1073/pnas.1701266114.

18.

Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah.

Boyd ES, Yu RQ, Barkay T, Hamilton TL, Baxter BK, Naftz DL, Marvin-DiPasquale M.

Sci Total Environ. 2017 Mar 1;581-582:495-506. doi: 10.1016/j.scitotenv.2016.12.157. Epub 2017 Jan 3.

PMID:
28057343
19.

Influence of Growth Phase, pH, and Temperature on the Abundance and Composition of Tetraether Lipids in the Thermoacidophile Picrophilus torridus.

Feyhl-Buska J, Chen Y, Jia C, Wang JX, Zhang CL, Boyd ES.

Front Microbiol. 2016 Aug 30;7:1323. doi: 10.3389/fmicb.2016.01323. eCollection 2016.

20.

Ecological differentiation in planktonic and sediment-associated chemotropic microbial populations in Yellowstone hot springs.

Colman DR, Feyhl-Buska J, Robinson KJ, Fecteau KM, Xu H, Shock EL, Boyd ES.

FEMS Microbiol Ecol. 2016 Oct;92(10). pii: fiw168. doi: 10.1093/femsec/fiw168. No abstract available.

PMID:
27565884
21.

The DUF59 Containing Protein SufT Is Involved in the Maturation of Iron-Sulfur (FeS) Proteins during Conditions of High FeS Cofactor Demand in Staphylococcus aureus.

Mashruwala AA, Bhatt S, Poudel S, Boyd ES, Boyd JM.

PLoS Genet. 2016 Aug 12;12(8):e1006233. doi: 10.1371/journal.pgen.1006233. eCollection 2016 Aug.

22.

Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah.

Lindsay MR, Anderson C, Fox N, Scofield G, Allen J, Anderson E, Bueter L, Poudel S, Sutherland K, Munson-McGee JH, Van Nostrand JD, Zhou J, Spear JR, Baxter BK, Lageson DR, Boyd ES.

Geobiology. 2017 Jan;15(1):131-145. doi: 10.1111/gbi.12201. Epub 2016 Jul 14.

PMID:
27418462
23.

Ecological differentiation in planktonic and sediment-associated chemotrophic microbial populations in Yellowstone hot springs.

Colman DR, Feyhl-Buska J, Robinson KJ, Fecteau KM, Xu H, Shock EL, Boyd ES.

FEMS Microbiol Ecol. 2016 Sep;92(9). pii: fiw137. doi: 10.1093/femsec/fiw137. Epub 2016 Jun 14. Erratum in: FEMS Microbiol Ecol. 2016 Oct;92(10):null.

PMID:
27306555
24.

Unification of [FeFe]-hydrogenases into three structural and functional groups.

Poudel S, Tokmina-Lukaszewska M, Colman DR, Refai M, Schut GJ, King PW, Maness PC, Adams MW, Peters JW, Bothner B, Boyd ES.

Biochim Biophys Acta. 2016 Sep;1860(9):1910-21. doi: 10.1016/j.bbagen.2016.05.034. Epub 2016 May 27.

PMID:
27241847
25.

Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote.

Urschel MR, Hamilton TL, Roden EE, Boyd ES.

FEMS Microbiol Ecol. 2016 May;92(5):fiw069. doi: 10.1093/femsec/fiw069. Epub 2016 Mar 31.

PMID:
27037359
26.

The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor.

Schut GJ, Zadvornyy O, Wu CH, Peters JW, Boyd ES, Adams MW.

Biochim Biophys Acta. 2016 Jul;1857(7):958-70. doi: 10.1016/j.bbabio.2016.01.010. Epub 2016 Jan 22. Review.

27.

Acidianus Tailed Spindle Virus: a New Archaeal Large Tailed Spindle Virus Discovered by Culture-Independent Methods.

Hochstein RA, Amenabar MJ, Munson-McGee JH, Boyd ES, Young MJ.

J Virol. 2016 Jan 13;90(7):3458-68. doi: 10.1128/JVI.03098-15.

28.

Microbial Fe(III) oxide reduction potential in Chocolate Pots hot spring, Yellowstone National Park.

Fortney NW, He S, Converse BJ, Beard BL, Johnson CM, Boyd ES, Roden EE.

Geobiology. 2016 May;14(3):255-75. doi: 10.1111/gbi.12173. Epub 2016 Jan 11.

PMID:
26750514
29.

Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph.

Harrold ZR, Skidmore ML, Hamilton TL, Desch L, Amada K, van Gelder W, Glover K, Roden EE, Boyd ES.

Appl Environ Microbiol. 2015 Dec 28;82(5):1486-95. doi: 10.1128/AEM.03398-15.

30.

Biochemical and Structural Properties of a Thermostable Mercuric Ion Reductase from Metallosphaera sedula.

Artz JH, White SN, Zadvornyy OA, Fugate CJ, Hicks D, Gauss GH, Posewitz MC, Boyd ES, Peters JW.

Front Bioeng Biotechnol. 2015 Jul 13;3:97. doi: 10.3389/fbioe.2015.00097. eCollection 2015.

31.

Biochemical and Structural Characterization of Enolase from Chloroflexus aurantiacus: Evidence for a Thermophilic Origin.

Zadvornyy OA, Boyd ES, Posewitz MC, Zorin NA, Peters JW.

Front Bioeng Biotechnol. 2015 Jun 1;3:74. doi: 10.3389/fbioe.2015.00074. eCollection 2015.

32.

Archaea on the move.

Boyd ES.

Environ Microbiol Rep. 2015 Jun;7(3):385-7. doi: 10.1111/1758-2229.12281. Epub 2015 Mar 26. No abstract available.

PMID:
25820379
33.

Carbon source preference in chemosynthetic hot spring communities.

Urschel MR, Kubo MD, Hoehler TM, Peters JW, Boyd ES.

Appl Environ Microbiol. 2015 Jun;81(11):3834-47. doi: 10.1128/AEM.00511-15. Epub 2015 Mar 27.

34.

Evolution of molybdenum nitrogenase during the transition from anaerobic to aerobic metabolism.

Boyd ES, Costas AM, Hamilton TL, Mus F, Peters JW.

J Bacteriol. 2015 May;197(9):1690-9. doi: 10.1128/JB.02611-14. Epub 2015 Mar 2.

35.

Leucocyte profiles of Arctic marine birds: correlates of migration and breeding phenology.

Mallory ML, Little CM, Boyd ES, Ballard J, Elliott KH, Gilchrist HG, Hipfner JM, Petersen A, Shutler D.

Conserv Physiol. 2015 Jun 26;3(1):cov028. doi: 10.1093/conphys/cov028. eCollection 2015.

36.

[FeFe]-hydrogenase abundance and diversity along a vertical redox gradient in Great Salt Lake, USA.

Boyd ES, Hamilton TL, Swanson KD, Howells AE, Baxter BK, Meuser JE, Posewitz MC, Peters JW.

Int J Mol Sci. 2014 Nov 28;15(12):21947-66. doi: 10.3390/ijms151221947.

37.

[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation.

Peters JW, Schut GJ, Boyd ES, Mulder DW, Shepard EM, Broderick JB, King PW, Adams MW.

Biochim Biophys Acta. 2015 Jun;1853(6):1350-69. doi: 10.1016/j.bbamcr.2014.11.021. Epub 2014 Nov 24. Review.

38.

Interplay between oxygen and Fe-S cluster biogenesis: insights from the Suf pathway.

Boyd ES, Thomas KM, Dai Y, Boyd JM, Outten FW.

Biochemistry. 2014 Sep 23;53(37):5834-47. doi: 10.1021/bi500488r. Epub 2014 Sep 11. Review.

39.

Chemolithotrophic primary production in a subglacial ecosystem.

Boyd ES, Hamilton TL, Havig JR, Skidmore ML, Shock EL.

Appl Environ Microbiol. 2014 Oct;80(19):6146-53. doi: 10.1128/AEM.01956-14. Epub 2014 Aug 1.

40.

Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution.

Alsop EB, Boyd ES, Raymond J.

BMC Ecol. 2014 May 28;14:16. doi: 10.1186/1472-6785-14-16.

41.

Evolutionary and biotechnological implications of robust hydrogenase activity in halophilic strains of Tetraselmis.

D'Adamo S, Jinkerson RE, Boyd ES, Brown SL, Baxter BK, Peters JW, Posewitz MC.

PLoS One. 2014 Jan 21;9(1):e85812. doi: 10.1371/journal.pone.0085812. eCollection 2014.

42.

Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum".

Liu Z, Müller J, Li T, Alvey RM, Vogl K, Frigaard NU, Rockwell NC, Boyd ES, Tomsho LP, Schuster SC, Henke P, Rohde M, Overmann J, Bryant DA.

Genome Biol. 2013 Nov 22;14(11):R127. doi: 10.1186/gb-2013-14-11-r127.

43.

Competition for ammonia influences the structure of chemotrophic communities in geothermal springs.

Hamilton TL, Koonce E, Howells A, Havig JR, Jewell T, de la Torre JR, Peters JW, Boyd ES.

Appl Environ Microbiol. 2014 Jan;80(2):653-61. doi: 10.1128/AEM.02577-13. Epub 2013 Nov 15.

44.

Hydrogenase activity of mineral-associated and suspended populations of Desulfovibrio desulfuricans Essex 6.

Reardon CL, Magnuson TS, Boyd ES, Leavitt WD, Reed DW, Geesey GG.

Microb Ecol. 2014 Feb;67(2):318-26. doi: 10.1007/s00248-013-0308-y. Epub 2013 Nov 6. Erratum in: Microb Ecol. 2014 Feb;67(2):488.

PMID:
24194097
45.

New insights into the evolutionary history of biological nitrogen fixation.

Boyd ES, Peters JW.

Front Microbiol. 2013 Aug 5;4:201. doi: 10.3389/fmicb.2013.00201. eCollection 2013.

46.

Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine.

Møller AK, Barkay T, Hansen MA, Norman A, Hansen LH, Sørensen SJ, Boyd ES, Kroer N.

FEMS Microbiol Ecol. 2014 Jan;87(1):52-63. doi: 10.1111/1574-6941.12189. Epub 2013 Aug 23.

47.

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.

Inskeep WP, Jay ZJ, Herrgard MJ, Kozubal MA, Rusch DB, Tringe SG, Macur RE, Jennings Rd, Boyd ES, Spear JR, Roberto FF.

Front Microbiol. 2013 May 15;4:95. doi: 10.3389/fmicb.2013.00095. eCollection 2013.

48.

The role of tetraether lipid composition in the adaptation of thermophilic archaea to acidity.

Boyd ES, Hamilton TL, Wang J, He L, Zhang CL.

Front Microbiol. 2013 Apr 3;4:62. doi: 10.3389/fmicb.2013.00062. eCollection 2013.

49.

Molecular evidence for an active endogenous microbiome beneath glacial ice.

Hamilton TL, Peters JW, Skidmore ML, Boyd ES.

ISME J. 2013 Jul;7(7):1402-12. doi: 10.1038/ismej.2013.31. Epub 2013 Mar 14.

50.

Classifying the metal dependence of uncharacterized nitrogenases.

McGlynn SE, Boyd ES, Peters JW, Orphan VJ.

Front Microbiol. 2013 Jan 30;3:419. doi: 10.3389/fmicb.2012.00419. eCollection 2012.

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