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Quorum sensing regulators AphA and OpaR control expression of the compatible solute ectoine biosynthesis operon.

Gregory GJ, Morreale DP, Carpenter MR, Kalburge SS, Boyd EF.

Appl Environ Microbiol. 2019 Sep 13. pii: AEM.01543-19. doi: 10.1128/AEM.01543-19. [Epub ahead of print]


Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus.

Regmi A, Boyd EF.

BMC Microbiol. 2019 May 27;19(1):112. doi: 10.1186/s12866-019-1487-6.


CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species.

McDonald ND, Regmi A, Morreale DP, Borowski JD, Boyd EF.

BMC Genomics. 2019 Feb 4;20(1):105. doi: 10.1186/s12864-019-5439-1.


Structural and functional characterization of a modified legionaminic acid involved in glycosylation of a bacterial lipopolysaccharide.

McDonald ND, DeMeester KE, Lewis AL, Grimes CL, Boyd EF.

J Biol Chem. 2018 Dec 7;293(49):19113-19126. doi: 10.1074/jbc.RA118.004966. Epub 2018 Oct 12.


Mechanisms for Pseudoalteromonas piscicida-Induced Killing of Vibrios and Other Bacterial Pathogens.

Richards GP, Watson MA, Needleman DS, Uknalis J, Boyd EF, Fay JP.

Appl Environ Microbiol. 2017 May 17;83(11). pii: e00175-17. doi: 10.1128/AEM.00175-17. Print 2017 Jun 1.


CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules.

Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, Boyd EF.

J Bacteriol. 2017 Apr 25;199(10). pii: e00842-16. doi: 10.1128/JB.00842-16. Print 2017 May 15.


Quorum Sensing Regulators Are Required for Metabolic Fitness in Vibrio parahaemolyticus.

Kalburge SS, Carpenter MR, Rozovsky S, Boyd EF.

Infect Immun. 2017 Feb 23;85(3). pii: e00930-16. doi: 10.1128/IAI.00930-16. Print 2017 Mar.


Host-Derived Sialic Acids Are an Important Nutrient Source Required for Optimal Bacterial Fitness In Vivo.

McDonald ND, Lubin JB, Chowdhury N, Boyd EF.

MBio. 2016 Apr 12;7(2):e02237-15. doi: 10.1128/mBio.02237-15.


Pathogenicity Island Cross Talk Mediated by Recombination Directionality Factors Facilitates Excision from the Chromosome.

Carpenter MR, Rozovsky S, Boyd EF.

J Bacteriol. 2015 Dec 14;198(5):766-76. doi: 10.1128/JB.00704-15.


Post-Genomic Analysis of Members of the Family Vibrionaceae.

Boyd EF, Carpenter MR, Chowdhury N, Cohen AL, Haines-Menges BL, Kalburge SS, Kingston JJ, Lubin JB, Ongagna-Yhombi SY, Whitaker WB.

Microbiol Spectr. 2015 Oct;3(5). doi: 10.1128/microbiolspec.VE-0009-2014. Review.


Host Sialic Acids: A Delicacy for the Pathogen with Discerning Taste.

Haines-Menges BL, Whitaker WB, Lubin JB, Boyd EF.

Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MBP-0005-2014. Review.


Host-like carbohydrates promote bloodstream survival of Vibrio vulnificus in vivo.

Lubin JB, Lewis WG, Gilbert NM, Weimer CM, Almagro-Moreno S, Boyd EF, Lewis AL.

Infect Immun. 2015 Aug;83(8):3126-36. doi: 10.1128/IAI.00345-15. Epub 2015 May 26.


Deciphering the role of multiple betaine-carnitine-choline transporters in the Halophile Vibrio parahaemolyticus.

Ongagna-Yhombi SY, McDonald ND, Boyd EF.

Appl Environ Microbiol. 2015 Jan;81(1):351-63. doi: 10.1128/AEM.02402-14. Epub 2014 Oct 24.


Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype.

Katz LS, Turnsek M, Kahler A, Hill VR, Boyd EF, Tarr CL.

Genome Announc. 2014 Jul 10;2(4). pii: e00617-14. doi: 10.1128/genomeA.00617-14.


Alternative sigma factor RpoE is important for Vibrio parahaemolyticus cell envelope stress response and intestinal colonization.

Haines-Menges B, Whitaker WB, Boyd EF.

Infect Immun. 2014 Sep;82(9):3667-77. doi: 10.1128/IAI.01854-14. Epub 2014 Jun 16.


Sequence and expression divergence of an ancient duplication of the chaperonin groESEL operon in Vibrio species.

Chowdhury N, Kingston JJ, Whitaker WB, Carpenter MR, Cohen A, Boyd EF.

Microbiology. 2014 Sep;160(Pt 9):1953-63. doi: 10.1099/mic.0.079194-0. Epub 2014 Jun 9.


Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493.

Kalburge SS, Polson SW, Boyd Crotty K, Katz L, Turnsek M, Tarr CL, Martinez-Urtaza J, Boyd EF.

Genome Announc. 2014 Mar 13;2(2). pii: e00159-14. doi: 10.1128/genomeA.00159-14.


High-salt preadaptation of Vibrio parahaemolyticus enhances survival in response to lethal environmental stresses.

Kalburge SS, Whitaker WB, Boyd EF.

J Food Prot. 2014 Feb;77(2):246-53. doi: 10.4315/0362-028X.JFP-13-241.


Loss of sigma factor RpoN increases intestinal colonization of Vibrio parahaemolyticus in an adult mouse model.

Whitaker WB, Richards GP, Boyd EF.

Infect Immun. 2014 Feb;82(2):544-56. doi: 10.1128/IAI.01210-13. Epub 2013 Nov 18.


Seasonal levels of the Vibrio predator bacteriovorax in atlantic, pacific, and gulf coast seawater.

Richards GP, Watson MA, Boyd EF, Burkhardt W 3rd, Lau R, Uknalis J, Fay JP.

Int J Microbiol. 2013;2013:375371. doi: 10.1155/2013/375371. Epub 2013 Dec 22.


Biosynthesis of the osmoprotectant ectoine, but not glycine betaine, is critical for survival of osmotically stressed Vibrio parahaemolyticus cells.

Ongagna-Yhombi SY, Boyd EF.

Appl Environ Microbiol. 2013 Aug;79(16):5038-49. doi: 10.1128/AEM.01008-13. Epub 2013 Jun 14.


Murine macrophage inflammatory cytokine production and immune activation in response to Vibrio parahaemolyticus infection.

Waters S, Luther S, Joerger T, Richards GP, Boyd EF, Parent MA.

Microbiol Immunol. 2013 Apr;57(4):323-8. doi: 10.1111/1348-0421.12034.


Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization.

Achtman M, Hale J, Murphy RA, Boyd EF, Porwollik S.

Infect Genet Evol. 2013 Jun;16:314-25. doi: 10.1016/j.meegid.2013.03.003. Epub 2013 Mar 16.


Mobile effector proteins on phage genomes.

Boyd EF, Carpenter MR, Chowdhury N.

Bacteriophage. 2012 Jul 1;2(3):139-148.


Predatory bacteria as natural modulators of Vibrio parahaemolyticus and Vibrio vulnificus in seawater and oysters.

Richards GP, Fay JP, Dickens KA, Parent MA, Soroka DS, Boyd EF.

Appl Environ Microbiol. 2012 Oct;78(20):7455-66. Epub 2012 Aug 17.


The VC1777-VC1779 proteins are members of a sialic acid-specific subfamily of TRAP transporters (SiaPQM) and constitute the sole route of sialic acid uptake in the human pathogen Vibrio cholerae.

Chowdhury N, Norris J, McAlister E, Lau SY, Thomas GH, Boyd EF.

Microbiology. 2012 Aug;158(Pt 8):2158-67. doi: 10.1099/mic.0.059659-0. Epub 2012 May 3.


Bacteriophage-encoded bacterial virulence factors and phage-pathogenicity island interactions.

Boyd EF.

Adv Virus Res. 2012;82:91-118. doi: 10.1016/B978-0-12-394621-8.00014-5. Review.


The Vibrio parahaemolyticus ToxRS regulator is required for stress tolerance and colonization in a novel orogastric streptomycin-induced adult murine model.

Whitaker WB, Parent MA, Boyd A, Richards GP, Boyd EF.

Infect Immun. 2012 May;80(5):1834-45. doi: 10.1128/IAI.06284-11. Epub 2012 Mar 5.


Sialic acid catabolism and transport gene clusters are lineage specific in Vibrio vulnificus.

Lubin JB, Kingston JJ, Chowdhury N, Boyd EF.

Appl Environ Microbiol. 2012 May;78(9):3407-15. doi: 10.1128/AEM.07395-11. Epub 2012 Feb 17.


On sialic acid transport and utilization by Vibrio cholerae.

Thomas GH, Boyd EF.

Microbiology. 2011 Dec;157(Pt 12):3253-4; discussion 3254-5. doi: 10.1099/mic.0.054692-0. Epub 2011 Oct 6. No abstract available.


Genomic and metabolic profiling of nonulosonic acids in Vibrionaceae reveal biochemical phenotypes of allelic divergence in Vibrio vulnificus.

Lewis AL, Lubin JB, Argade S, Naidu N, Choudhury B, Boyd EF.

Appl Environ Microbiol. 2011 Aug 15;77(16):5782-93. doi: 10.1128/AEM.00712-11. Epub 2011 Jul 1.


Bacterial catabolism of nonulosonic (sialic) acid and fitness in the gut.

Almagro-Moreno S, Boyd EF.

Gut Microbes. 2010 Jan;1(1):45-50.


An atomic force microscopy method for the detection of binding forces between bacteria and a lipid bilayer containing higher order gangliosides.

Adams EL, Almagro-Moreno S, Boyd EF.

J Microbiol Methods. 2011 Feb;84(2):352-4. doi: 10.1016/j.mimet.2010.12.014. Epub 2010 Dec 28.


Dichotomy in the evolution of pathogenicity island and bacteriophage encoded integrases from pathogenic Escherichia coli strains.

Napolitano MG, Almagro-Moreno S, Boyd EF.

Infect Genet Evol. 2011 Mar;11(2):423-36. doi: 10.1016/j.meegid.2010.12.003. Epub 2010 Dec 13.


Excision dynamics of Vibrio pathogenicity island-2 from Vibrio cholerae: role of a recombination directionality factor VefA.

Almagro-Moreno S, Napolitano MG, Boyd EF.

BMC Microbiol. 2010 Nov 30;10:306. doi: 10.1186/1471-2180-10-306.


Modulation of responses of Vibrio parahaemolyticus O3:K6 to pH and temperature stresses by growth at different salt concentrations.

Whitaker WB, Parent MA, Naughton LM, Richards GP, Blumerman SL, Boyd EF.

Appl Environ Microbiol. 2010 Jul;76(14):4720-9. doi: 10.1128/AEM.00474-10. Epub 2010 May 14.


Efficiency and specificity of CTXphi chromosomal integration: dif makes all the difference.

Boyd EF.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):3951-2. doi: 10.1073/pnas.1000310107. No abstract available.


Sensitive and rapid molecular detection assays for Salmonella enterica serovars Typhimurium and Heidelberg.

McCarthy N, Reen FJ, Buckley JF, Frye JG, Boyd EF, Gilroy D.

J Food Prot. 2009 Nov;72(11):2350-7.


Sialic acid catabolism confers a competitive advantage to pathogenic vibrio cholerae in the mouse intestine.

Almagro-Moreno S, Boyd EF.

Infect Immun. 2009 Sep;77(9):3807-16. doi: 10.1128/IAI.00279-09. Epub 2009 Jun 29.


Insights into the evolution of sialic acid catabolism among bacteria.

Almagro-Moreno S, Boyd EF.

BMC Evol Biol. 2009 May 26;9:118. doi: 10.1186/1471-2148-9-118.


Osmoadaptation among Vibrio species and unique genomic features and physiological responses of Vibrio parahaemolyticus.

Naughton LM, Blumerman SL, Carlberg M, Boyd EF.

Appl Environ Microbiol. 2009 May;75(9):2802-10. doi: 10.1128/AEM.01698-08. Epub 2009 Mar 13.


Evolutionary history of the phl gene cluster in the plant-associated bacterium Pseudomonas fluorescens.

Moynihan JA, Morrissey JP, Coppoolse ER, Stiekema WJ, O'Gara F, Boyd EF.

Appl Environ Microbiol. 2009 Apr;75(7):2122-31. doi: 10.1128/AEM.02052-08. Epub 2009 Jan 30.


Genomic islands are dynamic, ancient integrative elements in bacterial evolution.

Boyd EF, Almagro-Moreno S, Parent MA.

Trends Microbiol. 2009 Feb;17(2):47-53. doi: 10.1016/j.tim.2008.11.003. Epub 2009 Jan 21.


Rapid multiplex PCR and real-time TaqMan PCR assays for detection of Salmonella enterica and the highly virulent serovars Choleraesuis and Paratyphi C.

Woods DF, Reen FJ, Gilroy D, Buckley J, Frye JG, Boyd EF.

J Clin Microbiol. 2008 Dec;46(12):4018-22. doi: 10.1128/JCM.01229-08. Epub 2008 Oct 15.


Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus.

Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA.

BMC Microbiol. 2008 Jun 30;8:110. doi: 10.1186/1471-2180-8-110.


Crystal structure of VC1805, a conserved hypothetical protein from a Vibrio cholerae pathogenicity island, reveals homology to human p32.

Sheikh MA, Potter JA, Johnson KA, Sim RB, Boyd EF, Taylor GL.

Proteins. 2008 May 15;71(3):1563-71. doi: 10.1002/prot.21993. No abstract available.


Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island.

Cohen AL, Oliver JD, DePaola A, Feil EJ, Boyd EF.

Appl Environ Microbiol. 2007 Sep;73(17):5553-65. Epub 2007 Jul 6.


Investigation of a global collection of nontyphoidal Salmonella of various serotypes cultured between 1953 and 2004 for the presence of class 1 integrons.

Murphy BP, O'Mahony R, Buckley JF, Shine P, Boyd EF, Gilroy D, Fanning S.

FEMS Microbiol Lett. 2007 Jan;266(2):170-6.


The genomic code: inferring Vibrionaceae niche specialization.

Reen FJ, Almagro-Moreno S, Ussery D, Boyd EF.

Nat Rev Microbiol. 2006 Sep;4(9):697-704. Epub 2006 Aug 7. Review.


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