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Items: 1 to 50 of 144

1.

Increasing the accuracy of nanopore DNA sequencing using a time-varying cross membrane voltage.

Noakes MT, Brinkerhoff H, Laszlo AH, Derrington IM, Langford KW, Mount JW, Bowman JL, Baker KS, Doering KM, Tickman BI, Gundlach JH.

Nat Biotechnol. 2019 Jun;37(6):651-656. doi: 10.1038/s41587-019-0096-0. Epub 2019 Apr 22.

PMID:
31011178
2.

Cellulose Synthesis - Central Components and Their Evolutionary Relationships.

Lampugnani ER, Flores-Sandoval E, Tan QW, Mutwil M, Bowman JL, Persson S.

Trends Plant Sci. 2019 May;24(5):402-412. doi: 10.1016/j.tplants.2019.02.011. Epub 2019 Mar 22. Review.

PMID:
30905522
3.

Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha.

Hirakawa Y, Uchida N, Yamaguchi YL, Tabata R, Ishida S, Ishizaki K, Nishihama R, Kohchi T, Sawa S, Bowman JL.

PLoS Genet. 2019 Mar 7;15(3):e1007997. doi: 10.1371/journal.pgen.1007997. eCollection 2019 Mar.

4.

Determining the effects of DNA sequence on Hel308 helicase translocation along single-stranded DNA using nanopore tweezers.

Craig JM, Laszlo AH, Nova IC, Brinkerhoff H, Noakes MT, Baker KS, Bowman JL, Higinbotham HR, Mount JW, Gundlach JH.

Nucleic Acids Res. 2019 Mar 18;47(5):2506-2513. doi: 10.1093/nar/gkz004.

5.

Evolution and co-option of developmental regulatory networks in early land plants.

Bowman JL, Briginshaw LN, Florent SN.

Curr Top Dev Biol. 2019;131:35-53. doi: 10.1016/bs.ctdb.2018.10.001. Epub 2018 Dec 3. Review.

PMID:
30612623
6.

A cis-acting bidirectional transcription switch controls sexual dimorphism in the liverwort.

Hisanaga T, Okahashi K, Yamaoka S, Kajiwara T, Nishihama R, Shimamura M, Yamato KT, Bowman JL, Kohchi T, Nakajima K.

EMBO J. 2019 Mar 15;38(6). pii: e100240. doi: 10.15252/embj.2018100240. Epub 2019 Jan 4.

7.

An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha.

Eklund DM, Kanei M, Flores-Sandoval E, Ishizaki K, Nishihama R, Kohchi T, Lagercrantz U, Bhalerao RP, Sakata Y, Bowman JL.

Curr Biol. 2018 Nov 19;28(22):3691-3699.e3. doi: 10.1016/j.cub.2018.10.018. Epub 2018 Nov 8.

PMID:
30416060
8.

Something ancient and something neofunctionalized-evolution of land plant hormone signaling pathways.

Bowman JL, Briginshaw LN, Fisher TJ, Flores-Sandoval E.

Curr Opin Plant Biol. 2019 Feb;47:64-72. doi: 10.1016/j.pbi.2018.09.009. Epub 2018 Oct 16. Review.

PMID:
30339930
9.

Co-expression and Transcriptome Analysis of Marchantia polymorpha Transcription Factors Supports Class C ARFs as Independent Actors of an Ancient Auxin Regulatory Module.

Flores-Sandoval E, Romani F, Bowman JL.

Front Plant Sci. 2018 Oct 1;9:1345. doi: 10.3389/fpls.2018.01345. eCollection 2018.

10.

Differential post-fledging habitat use of Nearctic-Neotropical migratory birds within an urbanized landscape.

Ladin ZS, Van Nieuland S, Adalsteinsson SA, D'Amico V, Bowman JL, Buler JJ, Baetens JM, De Baets B, Shriver WG.

Mov Ecol. 2018 Aug 20;6:17. doi: 10.1186/s40462-018-0132-6. eCollection 2018.

11.

Marchantia liverworts as a proxy to plants' basal microbiomes.

Alcaraz LD, Peimbert M, Barajas HR, Dorantes-Acosta AE, Bowman JL, Arteaga-Vázquez MA.

Sci Rep. 2018 Aug 23;8(1):12712. doi: 10.1038/s41598-018-31168-0.

12.

3D Body Evolution: Adding a New Dimension to Colonize the Land.

Furumizu C, Hirakawa Y, Bowman JL, Sawa S.

Curr Biol. 2018 Aug 6;28(15):R838-R840. doi: 10.1016/j.cub.2018.06.040.

13.

UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants.

Clayton WA, Albert NW, Thrimawithana AH, McGhie TK, Deroles SC, Schwinn KE, Warren BA, McLachlan ARG, Bowman JL, Jordan BR, Davies KM.

Plant J. 2018 Nov;96(3):503-517. doi: 10.1111/tpj.14044. Epub 2018 Aug 25.

PMID:
30044520
14.

MicroRNAs in Marchantia polymorpha.

Lin SS, Bowman JL.

New Phytol. 2018 Oct;220(2):409-416. doi: 10.1111/nph.15294. Epub 2018 Jun 30. Review.

PMID:
29959894
15.

Theileriosis in Multiple Neonatal White-tailed Deer ( Odocoileus virginianus) in Delaware, USA.

Haus JM, Demchur JA, Dion JR, Habecker PL, Bowman JL.

J Wildl Dis. 2018 Oct;54(4):885-888. doi: 10.7589/2018-02-044. Epub 2018 May 24.

PMID:
29792761
16.

The KNOXI Transcription Factor SHOOT MERISTEMLESS Regulates Floral Fate in Arabidopsis.

Roth O, Alvarez JP, Levy M, Bowman JL, Ori N, Shani E.

Plant Cell. 2018 Jun;30(6):1309-1321. doi: 10.1105/tpc.18.00222. Epub 2018 May 9.

17.

Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land.

Romani F, Reinheimer R, Florent SN, Bowman JL, Moreno JE.

New Phytol. 2018 Jul;219(1):408-421. doi: 10.1111/nph.15133. Epub 2018 Apr 10.

18.

Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha.

Flores-Sandoval E, Eklund DM, Hong SF, Alvarez JP, Fisher TJ, Lampugnani ER, Golz JF, Vázquez-Lobo A, Dierschke T, Lin SS, Bowman JL.

New Phytol. 2018 Jun;218(4):1612-1630. doi: 10.1111/nph.15090. Epub 2018 Mar 25. Erratum in: New Phytol. 2019 Jan;221(2):1172.

19.

Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication.

Tylewicz S, Petterle A, Marttila S, Miskolczi P, Azeez A, Singh RK, Immanen J, Mähler N, Hvidsten TR, Eklund DM, Bowman JL, Helariutta Y, Bhalerao RP.

Science. 2018 Apr 13;360(6385):212-215. doi: 10.1126/science.aan8576. Epub 2018 Mar 8.

PMID:
29519919
20.

Rare Osteochondroma Associated with Natural Mortality of a Wild White-Tailed Deer ( Odocoileus virginianus).

Kalb MM, Miller DL, Keel MK, Bowman JL.

J Wildl Dis. 2018 Apr;54(2):426-429. doi: 10.7589/2017-08-212. Epub 2018 Jan 25.

PMID:
29369726
21.

Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha.

Schmid MW, Giraldo-Fonseca A, Rövekamp M, Smetanin D, Bowman JL, Grossniklaus U.

Genome Biol. 2018 Jan 25;19(1):9. doi: 10.1186/s13059-017-1383-z.

22.

Genetic analysis of the liverwort Marchantia polymorpha reveals that R2R3MYB activation of flavonoid production in response to abiotic stress is an ancient character in land plants.

Albert NW, Thrimawithana AH, McGhie TK, Clayton WA, Deroles SC, Schwinn KE, Bowman JL, Jordan BR, Davies KM.

New Phytol. 2018 Apr;218(2):554-566. doi: 10.1111/nph.15002. Epub 2018 Jan 24.

23.

Multiflora rose invasion amplifies prevalence of Lyme disease pathogen, but not necessarily Lyme disease risk.

Adalsteinsson SA, Shriver WG, Hojgaard A, Bowman JL, Brisson D, D'Amico V, Buler JJ.

Parasit Vectors. 2018 Jan 23;11(1):54. doi: 10.1186/s13071-018-2623-0.

24.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

25.

Abnormal Longitudinal Growth of the Aorta in Children with Familial Bicuspid Aortic Valve.

Nadorlik H, Bowman JL, Fitzgerald-Butt S, Mah ML, McBride KL, Kovalchin JP, Garg V.

Pediatr Cardiol. 2017 Dec;38(8):1709-1715. doi: 10.1007/s00246-017-1740-4. Epub 2017 Sep 25.

26.

A Genetic Screen for Impaired Systemic RNAi Highlights the Crucial Role of DICER-LIKE 2.

Taochy C, Gursanscky NR, Cao J, Fletcher SJ, Dressel U, Mitter N, Tucker MR, Koltunow AMG, Bowman JL, Vaucheret H, Carroll BJ.

Plant Physiol. 2017 Nov;175(3):1424-1437. doi: 10.1104/pp.17.01181. Epub 2017 Sep 19.

27.

Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants.

Jia Q, Li G, Köllner TG, Fu J, Chen X, Xiong W, Crandall-Stotler BJ, Bowman JL, Weston DJ, Zhang Y, Chen L, Xie Y, Li FW, Rothfels CJ, Larsson A, Graham SW, Stevenson DW, Wong GK, Gershenzon J, Chen F.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12328-12333. Epub 2016 Oct 10.

28.

Field Guide to Plant Model Systems.

Chang C, Bowman JL, Meyerowitz EM.

Cell. 2016 Oct 6;167(2):325-339. doi: 10.1016/j.cell.2016.08.031. Review.

29.

Active suppression of a leaf meristem orchestrates determinate leaf growth.

Alvarez JP, Furumizu C, Efroni I, Eshed Y, Bowman JL.

Elife. 2016 Oct 6;5. pii: e15023. doi: 10.7554/eLife.15023.

30.

Molecular Diversity of Terpene Synthases in the Liverwort Marchantia polymorpha.

Kumar S, Kempinski C, Zhuang X, Norris A, Mafu S, Zi J, Bell SA, Nybo SE, Kinison SE, Jiang Z, Goklany S, Linscott KB, Chen X, Jia Q, Brown SD, Bowman JL, Babbitt PC, Peters RJ, Chen F, Chappell J.

Plant Cell. 2016 Oct;28(10):2632-2650. Epub 2016 Sep 20.

31.

Evolution in the Cycles of Life.

Bowman JL, Sakakibara K, Furumizu C, Dierschke T.

Annu Rev Genet. 2016 Nov 23;50:133-154. Epub 2016 Sep 8. Review.

PMID:
27617970
32.

Utilization of Whole Exome Sequencing to Identify Causative Mutations in Familial Congenital Heart Disease.

LaHaye S, Corsmeier D, Basu M, Bowman JL, Fitzgerald-Butt S, Zender G, Bosse K, McBride KL, White P, Garg V.

Circ Cardiovasc Genet. 2016 Aug;9(4):320-9. doi: 10.1161/CIRCGENETICS.115.001324. Epub 2016 Jul 14.

33.

Marchantia MpRKD Regulates the Gametophyte-Sporophyte Transition by Keeping Egg Cells Quiescent in the Absence of Fertilization.

Rövekamp M, Bowman JL, Grossniklaus U.

Curr Biol. 2016 Jul 11;26(13):1782-1789. doi: 10.1016/j.cub.2016.05.028. Epub 2016 Jun 23.

34.

Marchantia.

Berger F, Bowman JL, Kohchi T.

Curr Biol. 2016 Mar 7;26(5):R186-7. doi: 10.1016/j.cub.2015.12.013. No abstract available.

35.

Correction: A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.

Flores-Sandoval E, Eklund DM, Bowman JL.

PLoS Genet. 2016 Feb 22;12(2):e1005900. doi: 10.1371/journal.pgen.1005900. eCollection 2016 Feb. No abstract available.

36.

Marchantia: Past, Present and Future.

Bowman JL, Araki T, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):205-9. doi: 10.1093/pcp/pcw023. Epub 2016 Feb 17. No abstract available.

PMID:
26889047
37.

Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses.

Lin PC, Lu CW, Shen BN, Lee GZ, Bowman JL, Arteaga-Vazquez MA, Liu LY, Hong SF, Lo CF, Su GM, Kohchi T, Ishizaki K, Zachgo S, Althoff F, Takenaka M, Yamato KT, Lin SS.

Plant Cell Physiol. 2016 Feb;57(2):339-58. doi: 10.1093/pcp/pcw020. Epub 2016 Feb 9.

38.

Class III HD-Zip activity coordinates leaf development in Physcomitrella patens.

Yip HK, Floyd SK, Sakakibara K, Bowman JL.

Dev Biol. 2016 Nov 1;419(1):184-197. doi: 10.1016/j.ydbio.2016.01.012. Epub 2016 Jan 22.

39.

Evolution of the YABBY gene family in seed plants.

Finet C, Floyd SK, Conway SJ, Zhong B, Scutt CP, Bowman JL.

Evol Dev. 2016 Mar-Apr;18(2):116-26. doi: 10.1111/ede.12173. Epub 2016 Jan 13.

PMID:
26763689
40.

The Naming of Names: Guidelines for Gene Nomenclature in Marchantia.

Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):257-61. doi: 10.1093/pcp/pcv193. Epub 2015 Dec 7. Review.

41.

A Role of TDIF Peptide Signaling in Vascular Cell Differentiation is Conserved Among Euphyllophytes.

Hirakawa Y, Bowman JL.

Front Plant Sci. 2015 Nov 26;6:1048. doi: 10.3389/fpls.2015.01048. eCollection 2015.

42.

Profiling and Characterization of Small RNAs in the Liverwort, Marchantia polymorpha, Belonging to the First Diverged Land Plants.

Tsuzuki M, Nishihama R, Ishizaki K, Kurihara Y, Matsui M, Bowman JL, Kohchi T, Hamada T, Watanabe Y.

Plant Cell Physiol. 2016 Feb;57(2):359-72. doi: 10.1093/pcp/pcv182. Epub 2015 Nov 19.

PMID:
26589267
43.

Is Aortic Valve Leaflet Morphology Predictive of Outcome in Pediatric Aortic Valve Stenosis?

Loomba RS, Bowman JL, Cao Y, Tweddell J, Dearani JA, Simpson PM, Cetta F, Pelech AN.

Congenit Heart Dis. 2015 Nov-Dec;10(6):552-60. doi: 10.1111/chd.12278. Epub 2015 Jul 29.

PMID:
26219421
44.

Correction: Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T.

PLoS Genet. 2015 Jun 26;11(6):e1005365. doi: 10.1371/journal.pgen.1005365. eCollection 2015 Jun. No abstract available.

45.

Auxin Produced by the Indole-3-Pyruvic Acid Pathway Regulates Development and Gemmae Dormancy in the Liverwort Marchantia polymorpha.

Eklund DM, Ishizaki K, Flores-Sandoval E, Kikuchi S, Takebayashi Y, Tsukamoto S, Hirakawa Y, Nonomura M, Kato H, Kouno M, Bhalerao RP, Lagercrantz U, Kasahara H, Kohchi T, Bowman JL.

Plant Cell. 2015 Jun;27(6):1650-69. doi: 10.1105/tpc.15.00065. Epub 2015 Jun 2. Erratum in: Plant Cell. 2016 Jan;28(1):266.

46.

Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T.

PLoS Genet. 2015 May 28;11(5):e1005084. doi: 10.1371/journal.pgen.1005084. eCollection 2015 May. Erratum in: PLoS Genet. 2015 Jun;11(6):e1005365.

47.

A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.

Flores-Sandoval E, Eklund DM, Bowman JL.

PLoS Genet. 2015 May 28;11(5):e1005207. doi: 10.1371/journal.pgen.1005207. eCollection 2015 May. Erratum in: PLoS Genet. 2016 Feb;12(2):e1005900.

48.

Efficient and Inducible Use of Artificial MicroRNAs in Marchantia polymorpha.

Flores-Sandoval E, Dierschke T, Fisher TJ, Bowman JL.

Plant Cell Physiol. 2016 Feb;57(2):281-90. doi: 10.1093/pcp/pcv068. Epub 2015 May 13.

PMID:
25971256
49.

A Brief History of Marchantia from Greece to Genomics.

Bowman JL.

Plant Cell Physiol. 2016 Feb;57(2):210-29. doi: 10.1093/pcp/pcv044. Epub 2015 Mar 12. Review.

PMID:
25766905
50.

Antagonistic roles for KNOX1 and KNOX2 genes in patterning the land plant body plan following an ancient gene duplication.

Furumizu C, Alvarez JP, Sakakibara K, Bowman JL.

PLoS Genet. 2015 Feb 11;11(2):e1004980. doi: 10.1371/journal.pgen.1004980. eCollection 2015 Feb.

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