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Items: 1 to 50 of 453

1.

Site-specific Protein Photochemical Covalent Attachment to Carbon Nanotube Side Walls and its Electronic Impact on Single Molecule Function.

Thomas S, Jamieson D, Gwyther R, Bowen BJ, Beachey A, Worthy H, Macdonald JE, Elliott M, Castell OK, Jones DD.

Bioconjug Chem. 2019 Nov 19. doi: 10.1021/acs.bioconjchem.9b00719. [Epub ahead of print]

PMID:
31743647
2.

Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces.

Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR.

Front Microbiol. 2019 Sep 20;10:2170. doi: 10.3389/fmicb.2019.02170. eCollection 2019.

3.

CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.

Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, De Raad M, Silva L, Luhrs A, Lubbe A, Hoyt DW, Francavilla C, Otani H, Deutsch S, Washton NM, Rubin EM, Mouncey NJ, Visel A, Northen T, Cheng JF, Bode HB, Yoshikuni Y.

Nat Microbiol. 2019 Dec;4(12):2498-2510. doi: 10.1038/s41564-019-0573-8. Epub 2019 Oct 14.

PMID:
31611640
4.

Cooking shapes the structure and function of the gut microbiome.

Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, Northen TR, Turnbaugh PJ.

Nat Microbiol. 2019 Dec;4(12):2052-2063. doi: 10.1038/s41564-019-0569-4. Epub 2019 Sep 30.

PMID:
31570867
5.

Robust Archaeal and Bacterial Communities Inhabit Shallow Subsurface Sediments of the Bonneville Salt Flats.

McGonigle JM, Bernau JA, Bowen BB, Brazelton WJ.

mSphere. 2019 Aug 28;4(4). pii: e00378-19. doi: 10.1128/mSphere.00378-19.

6.

Recruitment dynamics and fishery characteristics of juvenile goatfishes Mulloidichthys spp. in Hawai'i.

Kamikawa KT, Humphreys RL Jr, Bowen BW, Friedlander AM.

J Fish Biol. 2019 Oct;95(4):1086-1093. doi: 10.1111/jfb.14101. Epub 2019 Aug 5.

PMID:
31314922
7.

Probing the active fraction of soil microbiomes using BONCAT-FACS.

Couradeau E, Sasse J, Goudeau D, Nath N, Hazen TC, Bowen BP, Chakraborty R, Malmstrom RR, Northen TR.

Nat Commun. 2019 Jun 24;10(1):2770. doi: 10.1038/s41467-019-10542-0.

8.

Corrigendum: Exploring, Mapping, and Data Management Integration of Habitable Environments in Astrobiology.

Chan MA, Bowen BB, Corsetti FA, Farrand WH, Law ES, Newsom HE, Perl SM, Spear JR, Thompson DR.

Front Microbiol. 2019 May 29;10:1190. doi: 10.3389/fmicb.2019.01190. eCollection 2019.

9.

A Double-Blind, Placebo-Controlled, Phase 3b Study of ATX-101 for Reduction of Mild or Extreme Submental Fat.

Glogau RG, Glaser DA, Callender VD, Yoelin S, Dover JS, Green JB, Breshears L, Bowen B.

Dermatol Surg. 2019 Dec;45(12):1531-1541. doi: 10.1097/DSS.0000000000001850.

PMID:
30998531
10.

MAGI: A Method for Metabolite Annotation and Gene Integration.

Erbilgin O, Rübel O, Louie KB, Trinh M, Raad M, Wildish T, Udwary D, Hoover C, Deutsch S, Northen TR, Bowen BP.

ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4.

PMID:
30896917
11.

Exploring, Mapping, and Data Management Integration of Habitable Environments in Astrobiology.

Chan MA, Bowen BB, Corsetti FA, Farrand WH, Law ES, Newsom HE, Spear JR, Thompson DR.

Front Microbiol. 2019 Mar 5;10:147. doi: 10.3389/fmicb.2019.00147. eCollection 2019. Erratum in: Front Microbiol. 2019 May 29;10:1190.

12.

Histological Analysis of the Effect of ATX-101 (Deoxycholic Acid Injection) on Subcutaneous Fat: Results From a Phase 1 Open-Label Study.

Walker PS, Lee DR, Toth BA, Bowen B.

Dermatol Surg. 2019 Feb 18. doi: 10.1097/DSS.0000000000001851. [Epub ahead of print]

PMID:
30883481
13.

Structured DVD Education: Impact on Teaching Satisfaction and Anxiety Among Patients With Leukemia and Lymphoma and Their Family Members.

Peters C, Bowen B, Jusino-Leon G, Kooran S, Smith D, Higgins M, Spinks K.

Clin J Oncol Nurs. 2019 Apr 1;23(2):181-190. doi: 10.1188/19.CJON.181-190.

PMID:
30880807
14.

Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis.

Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas CE, Larabell C, Auer M, Northen TR, Merchant SS, Niyogi KK.

Plant Cell. 2019 Mar;31(3):579-601. doi: 10.1105/tpc.18.00742. Epub 2019 Feb 20.

15.

Microbial Ecology on Solar Panels in Berkeley, CA, United States.

Porcar M, Louie KB, Kosina SM, Van Goethem MW, Bowen BP, Tanner K, Northen TR.

Front Microbiol. 2018 Dec 11;9:3043. doi: 10.3389/fmicb.2018.03043. eCollection 2018.

16.

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass.

Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, Dangl JL, Northen TR.

New Phytol. 2019 Apr;222(2):1149-1160. doi: 10.1111/nph.15662. Epub 2019 Jan 24.

17.

Detection of biogenic amines in pet food ingredients by RP-HPLC with automated dansyl chloride derivatization.

Learey JJ, Crawford-Clark S, Bowen BJ, Barrow CJ, Adcock JL.

J Sep Sci. 2018 Dec;41(24):4430-4436. doi: 10.1002/jssc.201800455. Epub 2018 Nov 2.

PMID:
30318732
18.

Geopolitical species revisited: genomic and morphological data indicate that the roundtail chub Gila robusta species complex (Teleostei, Cyprinidae) is a single species.

Copus JM, Montgomery WL, Forsman ZH, Bowen BW, Toonen RJ.

PeerJ. 2018 Sep 27;6:e5605. doi: 10.7717/peerj.5605. eCollection 2018.

19.

Towards measuring growth rates of pathogens during infections by D2 O-labeling lipidomics.

Neubauer C, Sessions AL, Booth IR, Bowen BP, Kopf SH, Newman DK, Dalleska NF.

Rapid Commun Mass Spectrom. 2018 Dec 30;32(24):2129-2140. doi: 10.1002/rcm.8288.

PMID:
30252972
20.

Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes.

Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR.

BMC Microbiol. 2018 Sep 12;18(1):115. doi: 10.1186/s12866-018-1256-y.

21.

Insulator Nanostructure Desorption Ionization Mass Spectrometry.

Duncombe TA, Raad M, Bowen BP, Singh AK, Northen TR.

Anal Chem. 2018 Aug 21;90(16):9657-9661. doi: 10.1021/acs.analchem.8b01989. Epub 2018 Aug 6.

PMID:
30063326
22.

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D.

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. No abstract available.

23.

Deciphering microbial interactions in synthetic human gut microbiome communities.

Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP.

Mol Syst Biol. 2018 Jun 21;14(6):e8157. doi: 10.15252/msb.20178157.

24.

Shifting reef fish assemblages along a depth gradient in Pohnpei, Micronesia.

Coleman RR, Copus JM, Coffey DM, Whitton RK, Bowen BW.

PeerJ. 2018 Apr 24;6:e4650. doi: 10.7717/peerj.4650. eCollection 2018.

25.

Worldwide distribution of the DCDC2 READ1 regulatory element and its relationship with phoneme variation across languages.

DeMille MMC, Tang K, Mehta CM, Geissler C, Malins JG, Powers NR, Bowen BM, Adams AK, Truong DT, Frijters JC, Gruen JR.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4951-4956. doi: 10.1073/pnas.1710472115. Epub 2018 Apr 16. Erratum in: Proc Natl Acad Sci U S A. 2018 May 21;:.

26.

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL.

Nat Microbiol. 2018 Apr;3(4):470-480. doi: 10.1038/s41564-018-0129-3. Epub 2018 Mar 19.

PMID:
29556109
27.

An integrated workflow for phenazine-modifying enzyme characterization.

Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, Dangl JL, Pati A, Weller D, Northen TR, Cheng JF, Mouncey NJ, Deutsch S, Yoshikuni Y.

J Ind Microbiol Biotechnol. 2018 Jul;45(7):567-577. doi: 10.1007/s10295-018-2025-5. Epub 2018 Mar 15.

28.

The little shrimp that could: phylogeography of the circumtropical Stenopus hispidus (Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages.

Dudoit ', Iacchei M, Coleman RR, Gaither MR, Browne WE, Bowen BW, Toonen RJ.

PeerJ. 2018 Mar 6;6:e4409. doi: 10.7717/peerj.4409. eCollection 2018.

29.

A Study To Assess The Prevalence Of Exercise-Induced Bronchoconstriction In Inter-County Hurling.

Hunt EB, Murphy B, Murphy C, Crowley T, Cronin O, Hay S, Stack M, Bowen B, Ronan NJ, Greene E, Eustace JA, Plant BJ, Murphy DM.

Ir Med J. 2017 Dec 18;110(10):655.

PMID:
29465845
30.

Flickers of speciation: Sympatric colour morphs of the arc-eye hawkfish, Paracirrhites arcatus, reveal key elements of divergence with gene flow.

Whitney JL, Bowen BW, Karl SA.

Mol Ecol. 2018 Mar;27(6):1479-1493. doi: 10.1111/mec.14527. Epub 2018 Mar 25.

PMID:
29420860
31.

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics.

Swenson TL, Karaoz U, Swenson JM, Bowen BP, Northen TR.

Nat Commun. 2018 Jan 2;9(1):19. doi: 10.1038/s41467-017-02356-9.

32.

Site-Specific One-to-One Click Coupling of Single Proteins to Individual Carbon Nanotubes: A Single-Molecule Approach.

Freeley M, Worthy HL, Ahmed R, Bowen B, Watkins D, Macdonald JE, Zheng M, Jones DD, Palma M.

J Am Chem Soc. 2017 Dec 13;139(49):17834-17840. doi: 10.1021/jacs.7b07362. Epub 2017 Nov 29.

PMID:
29148737
33.

Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.

Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, Hillesland KL, Stahl DA, Wall JD, Arkin AP, Zhou J.

MBio. 2017 Nov 14;8(6). pii: e01780-17. doi: 10.1128/mBio.01780-17.

34.

Gadolinium DTPA Enhancement Characteristics of the Rat Sciatic Nerve after Crush Injury at 4.7T.

Hill BJ, Padgett KR, Kalra V, Marcillo A, Bowen B, Pattany P, Dietrich D, Quencer R.

AJNR Am J Neuroradiol. 2018 Jan;39(1):177-183. doi: 10.3174/ajnr.A5437. Epub 2017 Nov 2.

35.

Role of adipocyte mitochondria in inflammation, lipemia and insulin sensitivity in humans: effects of pioglitazone treatment.

Xie X, Sinha S, Yi Z, Langlais PR, Madan M, Bowen BP, Willis W, Meyer C.

Int J Obes (Lond). 2017 Aug 14. doi: 10.1038/ijo.2017.192. [Epub ahead of print]

36.

Exometabolomic Analysis of Cross-Feeding Metabolites.

Lubbe A, Bowen BP, Northen T.

Metabolites. 2017 Oct 4;7(4). pii: E50. doi: 10.3390/metabo7040050.

37.

BASTet: Shareable and Reproducible Analysis and Visualization of Mass Spectrometry Imaging Data via OpenMSI.

Rubel O, Bowen BP.

IEEE Trans Vis Comput Graph. 2018 Jan;24(1):1025-1035. doi: 10.1109/TVCG.2017.2744479. Epub 2017 Aug 29.

38.

Proactive penicillin allergy testing in primary care patients labeled as allergic: outcomes and barriers.

Sundquist BK, Bowen BJ, Otabor U, Celestin J, Sorum PC.

Postgrad Med. 2017 Nov;129(8):915-920. doi: 10.1080/00325481.2017.1370360. Epub 2017 Aug 24.

PMID:
28829234
39.

Phylogeography of Lionfishes (Pterois) Indicate Taxonomic Over Splitting and Hybrid Origin of the Invasive Pterois volitans.

Wilcox CL, Motomura H, Matsunuma M, Bowen BW.

J Hered. 2018 Feb 14;109(2):162-175. doi: 10.1093/jhered/esx056.

PMID:
28637254
40.

Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry.

Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann RN, Siuzdak G, Northen TR.

Anal Chem. 2017 Jun 20;89(12):6521-6526. doi: 10.1021/acs.analchem.7b00599. Epub 2017 May 26.

PMID:
28520405
41.

Widespread adenine N6-methylation of active genes in fungi.

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV.

Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8.

42.

OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging.

de Raad M, de Rond T, Rübel O, Keasling JD, Northen TR, Bowen BP.

Anal Chem. 2017 Jun 6;89(11):5818-5823. doi: 10.1021/acs.analchem.6b05004. Epub 2017 May 15.

PMID:
28467051
43.

Response to Delrieu-Trottin et al.: Hybrids, Color Variants and the Consistently Devilish Taxonomy of Pygmy Angelfishes.

DiBattista JD, Gaither MR, Hobbs JA, Rocha LA, Bowen BW.

J Hered. 2017 May 1;108(3):337-339. doi: 10.1093/jhered/esx009. No abstract available.

PMID:
28391308
44.

Phylogenetics of Kingsnakes, Lampropeltis getula Complex (Serpentes: Colubridae), in Eastern North America.

Krysko KL, Nuñez LP, Newman CE, Bowen BW.

J Hered. 2017 May 1;108(3):226-238. doi: 10.1093/jhered/esw086.

PMID:
28119446
45.

Dynamic substrate preferences predict metabolic properties of a simple microbial consortium.

Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR.

BMC Bioinformatics. 2017 Jan 23;18(1):57. doi: 10.1186/s12859-017-1478-2.

46.

Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (D2O) Stable Isotope Probing.

Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR.

ACS Chem Biol. 2017 Mar 17;12(3):674-681. doi: 10.1021/acschembio.6b00890. Epub 2017 Jan 18.

47.

Outcomes of Pulmonary Rehabilitation for COPD in Older Patients: A Comparative Study.

Bennett D, Bowen B, McCarthy P, Subramaniam A, O'Connor M, Henry MT.

COPD. 2017 Apr;14(2):170-175. doi: 10.1080/15412555.2016.1258051. Epub 2016 Dec 20.

PMID:
27997252
48.

A robust gene-stacking method utilizing yeast assembly for plant synthetic biology.

Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D.

Nat Commun. 2016 Oct 26;7:13215. doi: 10.1038/ncomms13215.

49.

A comprehensive investigation of mesophotic coral ecosystems in the Hawaiian Archipelago.

Pyle RL, Boland R, Bolick H, Bowen BW, Bradley CJ, Kane C, Kosaki RK, Langston R, Longenecker K, Montgomery A, Parrish FA, Popp BN, Rooney J, Smith CM, Wagner D, Spalding HL.

PeerJ. 2016 Oct 4;4:e2475. eCollection 2016.

50.

Angelfishes, Paper Tigers, and the Devilish Taxonomy of the Centropyge flavissima Complex.

DiBattista JD, Gaither MR, Hobbs JA, Rocha LA, Bowen BW.

J Hered. 2016;107(7):647-653. Epub 2016 Sep 20.

PMID:
27651391

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