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Items: 1 to 50 of 486

1.

The devil is in the details: identifying aspects of temperature variation that underlie sex determination in species with TSD.

Carter AW, Paitz RT, Bowden RM.

Integr Comp Biol. 2019 May 16. pii: icz036. doi: 10.1093/icb/icz036. [Epub ahead of print]

PMID:
31095337
2.

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV).

McNaughton AL, Roberts HE, Bonsall D, de Cesare M, Mokaya J, Lumley SF, Golubchik T, Piazza P, Martin JB, de Lara C, Brown A, Ansari MA, Bowden R, Barnes E, Matthews PC.

Sci Rep. 2019 May 8;9(1):7081. doi: 10.1038/s41598-019-43524-9.

3.

Sequencing of human genomes with nanopore technology.

Bowden R, Davies RW, Heger A, Pagnamenta AT, de Cesare M, Oikkonen LE, Parkes D, Freeman C, Dhalla F, Patel SY, Popitsch N, Ip CLC, Roberts HE, Salatino S, Lockstone H, Lunter G, Taylor JC, Buck D, Simpson MA, Donnelly P.

Nat Commun. 2019 Apr 23;10(1):1869. doi: 10.1038/s41467-019-09637-5.

4.

Weakly Supervised Learning with Multi-Stream CNN-LSTM-HMMs to Discover Sequential Parallelism in Sign Language Videos.

Koller O, Camgoz C, Ney H, Bowden R.

IEEE Trans Pattern Anal Mach Intell. 2019 Apr 15. doi: 10.1109/TPAMI.2019.2911077. [Epub ahead of print]

PMID:
30990421
5.

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm.

Hinch AG, Zhang G, Becker PW, Moralli D, Hinch R, Davies B, Bowden R, Donnelly P.

Science. 2019 Mar 22;363(6433). pii: eaau8861. doi: 10.1126/science.aau8861.

PMID:
30898902
6.

Panton-Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS.

Young BC, Earle SG, Soeng S, Sar P, Kumar V, Hor S, Sar V, Bousfield R, Sanderson ND, Barker L, Stoesser N, Emary KR, Parry CM, Nickerson EK, Turner P, Bowden R, Crook DW, Wyllie DH, Day NP, Wilson DJ, Moore CE.

Elife. 2019 Feb 22;8. pii: e42486. doi: 10.7554/eLife.42486.

7.

Cellular α-synuclein pathology is associated with bioenergetic dysfunction in Parkinson's iPSC-derived dopamine neurons.

Zambon F, Cherubini M, Fernandes HJR, Lang C, Ryan BJ, Volpato V, Bengoa-Vergniory N, Vingill S, Attar M, Booth HDE, Haenseler W, Vowles J, Bowden R, Webber C, Cowley SA, Wade-Martins R.

Hum Mol Genet. 2019 Jun 15;28(12):2001-2013. doi: 10.1093/hmg/ddz038.

8.

Mapping of Quantitative Trait Loci for Leaf Rust Resistance in the Wheat Population Ning7840 × Clark.

Li C, Wang Z, Li C, Bowden R, Bai G, Li C, Li C, Su Z, Carver BF.

Plant Dis. 2017 Dec;101(12):1974-1979. doi: 10.1094/PDIS-12-16-1743-RE. Epub 2017 Oct 13.

PMID:
30677381
9.

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes.

Lang C, Campbell KR, Ryan BJ, Carling P, Attar M, Vowles J, Perestenko OV, Bowden R, Baig F, Kasten M, Hu MT, Cowley SA, Webber C, Wade-Martins R.

Cell Stem Cell. 2019 Jan 3;24(1):93-106.e6. doi: 10.1016/j.stem.2018.10.023. Epub 2018 Nov 29.

10.

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis.

Méric G, Mageiros L, Pensar J, Laabei M, Yahara K, Pascoe B, Kittiwan N, Tadee P, Post V, Lamble S, Bowden R, Bray JE, Morgenstern M, Jolley KA, Maiden MCJ, Feil EJ, Didelot X, Miragaia M, de Lencastre H, Moriarty TF, Rohde H, Massey R, Mack D, Corander J, Sheppard SK.

Nat Commun. 2018 Nov 28;9(1):5034. doi: 10.1038/s41467-018-07368-7.

11.

Genotype Imputation in Winter Wheat Using First-Generation Haplotype Map SNPs Improves Genome-Wide Association Mapping and Genomic Prediction of Traits.

Nyine M, Wang S, Kiani K, Jordan K, Liu S, Byrne P, Haley S, Baenziger S, Chao S, Bowden R, Akhunov E.

G3 (Bethesda). 2019 Jan 9;9(1):125-133. doi: 10.1534/g3.118.200664.

12.

Development and characterization of wheat-sea wheatgrass (Thinopyrum junceiforme) amphiploids for biotic stress resistance and abiotic stress tolerance.

Li W, Zhang Q, Wang S, Langham MA, Singh D, Bowden RL, Xu SS.

Theor Appl Genet. 2019 Jan;132(1):163-175. doi: 10.1007/s00122-018-3205-4. Epub 2018 Oct 19.

PMID:
30341494
13.

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.

Kinchen J, Chen HH, Parikh K, Antanaviciute A, Jagielowicz M, Fawkner-Corbett D, Ashley N, Cubitt L, Mellado-Gomez E, Attar M, Sharma E, Wills Q, Bowden R, Richter FC, Ahern D, Puri KD, Henault J, Gervais F, Koohy H, Simmons A.

Cell. 2018 Oct 4;175(2):372-386.e17. doi: 10.1016/j.cell.2018.08.067. Epub 2018 Sep 27.

14.

Evidence of embryonic regulation of maternally derived yolk corticosterone.

Carter AW, Bowden RM, Paitz RT.

J Exp Biol. 2018 Nov 14;221(Pt 22). pii: jeb182600. doi: 10.1242/jeb.182600.

15.

ToxA Is Present in the U.S. Bipolaris sorokiniana Population and Is a Significant Virulence Factor on Wheat Harboring Tsn1.

Friesen TL, Holmes DJ, Bowden RL, Faris JD.

Plant Dis. 2018 Dec;102(12):2446-2452. doi: 10.1094/PDIS-03-18-0521-RE. Epub 2018 Sep 24.

PMID:
30252627
16.

Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study.

Volpato V, Smith J, Sandor C, Ried JS, Baud A, Handel A, Newey SE, Wessely F, Attar M, Whiteley E, Chintawar S, Verheyen A, Barta T, Lako M, Armstrong L, Muschet C, Artati A, Cusulin C, Christensen K, Patsch C, Sharma E, Nicod J, Brownjohn P, Stubbs V, Heywood WE, Gissen P, De Filippis R, Janssen K, Reinhardt P, Adamski J, Royaux I, Peeters PJ, Terstappen GC, Graf M, Livesey FJ, Akerman CJ, Mills K, Bowden R, Nicholson G, Webber C, Cader MZ, Lakics V.

Stem Cell Reports. 2018 Oct 9;11(4):897-911. doi: 10.1016/j.stemcr.2018.08.013. Epub 2018 Sep 20.

17.

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse.

Bonsall D, Black S, Howe AY, Chase R, Ingravallo P, Pak I, Brown A, Smith DA, Bowden R, Barnes E.

Infect Drug Resist. 2018 Aug 8;11:1119-1135. doi: 10.2147/IDR.S156581. eCollection 2018.

18.

The detrital input and removal treatment (DIRT) network: Insights into soil carbon stabilization.

Lajtha K, Bowden RD, Crow S, Fekete I, Kotroczó Z, Plante A, Simpson MJ, Nadelhoffer KJ.

Sci Total Environ. 2018 Nov 1;640-641:1112-1120. doi: 10.1016/j.scitotenv.2018.05.388. Epub 2018 Jun 6.

PMID:
30021276
19.

HARD-PnP: PnP Optimization Using a Hybrid Approximate Representation.

Hadfield S, Lebeda K, Bowden R.

IEEE Trans Pattern Anal Mach Intell. 2019 Mar;41(3):768-774. doi: 10.1109/TPAMI.2018.2806446. Epub 2018 Feb 15.

PMID:
29994452
20.

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

Batty EM, Chaemchuen S, Blacksell S, Richards AL, Paris D, Bowden R, Chan C, Lachumanan R, Day N, Donnelly P, Chen S, Salje J.

PLoS Negl Trop Dis. 2018 Jun 6;12(6):e0006566. doi: 10.1371/journal.pntd.0006566. eCollection 2018 Jun.

21.

Biogeochemical probing of microbial communities in a basalt-hosted hot spring at Kverkfjöll volcano, Iceland.

Cousins CR, Fogel M, Bowden R, Crawford I, Boyce A, Cockell C, Gunn M.

Geobiology. 2018 Sep;16(5):507-521. doi: 10.1111/gbi.12291. Epub 2018 Jun 1.

PMID:
29856116
22.

Temperature fluctuations and maternal estrogens as critical factors for understanding temperature-dependent sex determination in nature.

Bowden RM, Paitz RT.

J Exp Zool A Ecol Integr Physiol. 2018 Apr;329(4-5):177-184. doi: 10.1002/jez.2183. Epub 2018 May 28. Review.

23.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

24.

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

Martin HC, Batty EM, Hussin J, Westall P, Daish T, Kolomyjec S, Piazza P, Bowden R, Hawkins M, Grant T, Moritz C, Grutzner F, Gongora J, Donnelly P.

Mol Biol Evol. 2018 May 1;35(5):1238-1252. doi: 10.1093/molbev/msy041.

25.

Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat.

Mourad AMI, Sallam A, Belamkar V, Wegulo S, Bowden R, Jin Y, Mahdy E, Bakheit B, El-Wafaa AA, Poland J, Baenziger PS.

Front Plant Sci. 2018 Mar 27;9:380. doi: 10.3389/fpls.2018.00380. eCollection 2018.

26.

Impact of IFNL4 genotype on Interferon-stimulated Gene Expression during DAA therapy for Hepatitis C.

Ramamurthy N, Marchi E, Ansari MA, Pedergnana V, Mclean A, Hudson E; STOP HCV consortium, Bowden R, Spencer CCA, Barnes E, Klenerman P.

Hepatology. 2018 Mar 13. doi: 10.1002/hep.29877. [Epub ahead of print]

27.

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

Méric G, Mageiros L, Pascoe B, Woodcock DJ, Mourkas E, Lamble S, Bowden R, Jolley KA, Raymond B, Sheppard SK.

Mol Ecol. 2018 Apr;27(7):1524-1540. doi: 10.1111/mec.14546. Epub 2018 Apr 2.

28.

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors.

Smith D, Magri A, Bonsall D, Ip CLC, Trebes A, Brown A, Piazza P, Bowden R, Nguyen D, Ansari MA, Simmonds P, Barnes E; STOP-HCV Consortium.

Hepatology. 2019 May;69(5):1861-1872. doi: 10.1002/hep.29837. Epub 2018 Apr 27.

29.

A practical solution for preserving single cells for RNA sequencing.

Attar M, Sharma E, Li S, Bryer C, Cubitt L, Broxholme J, Lockstone H, Kinchen J, Simmons A, Piazza P, Buck D, Livak KJ, Bowden R.

Sci Rep. 2018 Feb 1;8(1):2151. doi: 10.1038/s41598-018-20372-7.

30.

Extending the phenotype associated with the CSNK2A1-related Okur-Chung syndrome-A clinical study of 11 individuals.

Owen CI, Bowden R, Parker MJ, Patterson J, Patterson J, Price S, Sarkar A, Castle B, Deshpande C, Splitt M, Ghali N, Dean J, Green AJ, Crosby C; Deciphering Developmental Disorders Study, Tatton-Brown K.

Am J Med Genet A. 2018 May;176(5):1108-1114. doi: 10.1002/ajmg.a.38610. Epub 2018 Jan 31.

PMID:
29383814
31.

Introduction to ecoimmunology: An integrative approach.

Bowden RM, French SS, Demas GE.

J Exp Zool A Ecol Integr Physiol. 2017 Jun;327(5):219-221. doi: 10.1002/jez.2114. No abstract available.

PMID:
29356423
32.

Short heatwaves during fluctuating incubation regimes produce females under temperature-dependent sex determination with implications for sex ratios in nature.

Carter AW, Sadd BM, Tuberville TD, Paitz RT, Bowden RM.

Sci Rep. 2018 Jan 8;8(1):3. doi: 10.1038/s41598-017-17708-0.

33.

Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99.

Salcedo A, Rutter W, Wang S, Akhunova A, Bolus S, Chao S, Anderson N, De Soto MF, Rouse M, Szabo L, Bowden RL, Dubcovsky J, Akhunov E.

Science. 2017 Dec 22;358(6370):1604-1606. doi: 10.1126/science.aao7294.

34.

Severe infections emerge from commensal bacteria by adaptive evolution.

Young BC, Wu CH, Gordon NC, Cole K, Price JR, Liu E, Sheppard AE, Perera S, Charlesworth J, Golubchik T, Iqbal Z, Bowden R, Massey RC, Paul J, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wyllie DH, Wilson DJ.

Elife. 2017 Dec 19;6. pii: e30637. doi: 10.7554/eLife.30637.

35.

Physiologic Correlates of Interactions between Adult Male and Immature Long-tailed Macaques (Macaca fascicularis).

Bardi M, Prugh AM, Eubanks BT, Trexler K, Bowden RL, Evans S, Lambert KG, Huffman MA.

J Am Assoc Lab Anim Sci. 2017 Nov 1;56(6):718-728.

36.

Maternity Nurses' Perceptions of Implementation of the Ten Steps to Successful Breastfeeding.

Cunningham EM, Doyle EI, Bowden RG.

MCN Am J Matern Child Nurs. 2018 Jan/Feb;43(1):38-43. doi: 10.1097/NMC.0000000000000392.

PMID:
29215422
37.

Characterizing the distribution of steroid sulfatase during embryonic development: when and where might metabolites of maternal steroids be reactivated?

Paitz RT, Duffield KR, Bowden RM.

J Exp Biol. 2017 Dec 15;220(Pt 24):4567-4570. doi: 10.1242/jeb.167031. Epub 2017 Oct 26.

38.

Resistance Genes in Global Crop Breeding Networks.

Garrett KA, Andersen KF, Asche F, Bowden RL, Forbes GA, Kulakow PA, Zhou B.

Phytopathology. 2017 Oct;107(10):1268-1278. doi: 10.1094/PHYTO-03-17-0082-FI. Epub 2017 Aug 31.

39.

Long-term litter manipulation alters soil organic matter turnover in a temperate deciduous forest.

Wang JJ, Pisani O, Lin LH, Lun OOY, Bowden RD, Lajtha K, Simpson AJ, Simpson MJ.

Sci Total Environ. 2017 Dec 31;607-608:865-875. doi: 10.1016/j.scitotenv.2017.07.063. Epub 2017 Jul 27.

PMID:
28711848
40.

Quantitative Trait Loci for Slow-Rusting Resistance to Leaf Rust in Doubled-Haploid Wheat Population CI13227 × Lakin.

Lu Y, Bowden RL, Zhang G, Xu X, Fritz AK, Bai G.

Phytopathology. 2017 Nov;107(11):1372-1380. doi: 10.1094/PHYTO-09-16-0347-R. Epub 2017 Aug 18.

PMID:
28589757
41.

Seasonal shifts in sex ratios are mediated by maternal effects and fluctuating incubation temperatures.

Carter AW, Bowden RM, Paitz RT.

Funct Ecol. 2017 Apr;31(4):876-884. doi: 10.1111/1365-2435.12801. Epub 2016 Dec 19.

42.

Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses.

Rutter WB, Salcedo A, Akhunova A, He F, Wang S, Liang H, Bowden RL, Akhunov E.

BMC Genomics. 2017 Apr 12;18(1):291. doi: 10.1186/s12864-017-3678-6.

43.

Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.

Rolo J, Worning P, Boye Nielsen J, Sobral R, Bowden R, Bouchami O, Damborg P, Guardabassi L, Perreten V, Westh H, Tomasz A, de Lencastre H, Miragaia M.

PLoS Genet. 2017 Apr 10;13(4):e1006674. doi: 10.1371/journal.pgen.1006674. eCollection 2017 Apr.

44.

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

Ansari MA, Pedergnana V, L C Ip C, Magri A, Von Delft A, Bonsall D, Chaturvedi N, Bartha I, Smith D, Nicholson G, McVean G, Trebes A, Piazza P, Fellay J, Cooke G, Foster GR; STOP-HCV Consortium, Hudson E, McLauchlan J, Simmonds P, Bowden R, Klenerman P, Barnes E, Spencer CCA.

Nat Genet. 2017 May;49(5):666-673. doi: 10.1038/ng.3835. Epub 2017 Apr 10.

45.

A Pilot Study to Examine the Effects of an Anti-inflammatory Supplement on Eicosanoid Derivatives in Patients with Chronic Kidney Disease.

Shelmadine BD, Bowden RG, Moreillon JJ, Cooke MB, Yang P, Deike E, Griggs JO, Wilson RL.

J Altern Complement Med. 2017 Aug;23(8):632-638. doi: 10.1089/acm.2016.0007. Epub 2017 Apr 4.

PMID:
28375641
46.

Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).

Rolo J, Worning P, Nielsen JB, Bowden R, Bouchami O, Damborg P, Guardabassi L, Perreten V, Tomasz A, Westh H, de Lencastre H, Miragaia M.

Antimicrob Agents Chemother. 2017 May 24;61(6). pii: e02302-16. doi: 10.1128/AAC.02302-16. Print 2017 Jun.

47.

TMAGIC: A Model-Free 3D Tracker.

Lebeda K, Hadfield S, Bowden R.

IEEE Trans Image Process. 2017 Sep;26(9):4378-4388. doi: 10.1109/TIP.2017.2675343. Epub 2017 Mar 1.

PMID:
28362608
48.

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.

Murray S, Pascoe B, Méric G, Mageiros L, Yahara K, Hitchings MD, Friedmann Y, Wilkinson TS, Gormley FJ, Mack D, Bray JE, Lamble S, Bowden R, Jolley KA, Maiden MCJ, Wendlandt S, Schwarz S, Corander J, Fitzgerald JR, Sheppard SK.

Genome Biol Evol. 2017 Apr 1;9(4):830-842. doi: 10.1093/gbe/evx037.

49.

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease.

Sandor C, Robertson P, Lang C, Heger A, Booth H, Vowles J, Witty L, Bowden R, Hu M, Cowley SA, Wade-Martins R, Webber C.

Hum Mol Genet. 2017 Feb 1;26(3):552-566. doi: 10.1093/hmg/ddw412.

50.

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq.

Wills QF, Mellado-Gomez E, Nolan R, Warner D, Sharma E, Broxholme J, Wright B, Lockstone H, James W, Lynch M, Gonzales M, West J, Leyrat A, Padilla-Parra S, Filippi S, Holmes C, Moore MD, Bowden R.

BMC Genomics. 2017 Jan 7;18(1):53. doi: 10.1186/s12864-016-3445-0.

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