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Items: 1 to 50 of 469

1.

Development and characterization of wheat-sea wheatgrass (Thinopyrum junceiforme) amphiploids for biotic stress resistance and abiotic stress tolerance.

Li W, Zhang Q, Wang S, Langham MA, Singh D, Bowden RL, Xu SS.

Theor Appl Genet. 2018 Oct 19. doi: 10.1007/s00122-018-3205-4. [Epub ahead of print]

PMID:
30341494
2.

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.

Kinchen J, Chen HH, Parikh K, Antanaviciute A, Jagielowicz M, Fawkner-Corbett D, Ashley N, Cubitt L, Mellado-Gomez E, Attar M, Sharma E, Wills Q, Bowden R, Richter FC, Ahern D, Puri KD, Henault J, Gervais F, Koohy H, Simmons A.

Cell. 2018 Oct 4;175(2):372-386.e17. doi: 10.1016/j.cell.2018.08.067. Epub 2018 Sep 27.

3.

Evidence of embryonic regulation of maternally derived yolk corticosterone.

Carter AW, Bowden RM, Paitz RT.

J Exp Biol. 2018 Sep 28. pii: jeb.182600. doi: 10.1242/jeb.182600. [Epub ahead of print]

PMID:
30266787
4.

ToxA Is Present in the U.S. Bipolaris sorokiniana Population and Is a Significant Virulence Factor on Wheat Harboring Tsn1.

Friesen TL, Holmes DJ, Bowden RL, Faris JD.

Plant Dis. 2018 Sep 20:PDIS03180521RE. doi: 10.1094/PDIS-03-18-0521-RE. [Epub ahead of print]

PMID:
30252627
5.

Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study.

Volpato V, Smith J, Sandor C, Ried JS, Baud A, Handel A, Newey SE, Wessely F, Attar M, Whiteley E, Chintawar S, Verheyen A, Barta T, Lako M, Armstrong L, Muschet C, Artati A, Cusulin C, Christensen K, Patsch C, Sharma E, Nicod J, Brownjohn P, Stubbs V, Heywood WE, Gissen P, De Filippis R, Janssen K, Reinhardt P, Adamski J, Royaux I, Peeters PJ, Terstappen GC, Graf M, Livesey FJ, Akerman CJ, Mills K, Bowden R, Nicholson G, Webber C, Cader MZ, Lakics V.

Stem Cell Reports. 2018 Oct 9;11(4):897-911. doi: 10.1016/j.stemcr.2018.08.013. Epub 2018 Sep 20.

6.

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse.

Bonsall D, Black S, Howe AY, Chase R, Ingravallo P, Pak I, Brown A, Smith DA, Bowden R, Barnes E.

Infect Drug Resist. 2018 Aug 8;11:1119-1135. doi: 10.2147/IDR.S156581. eCollection 2018.

7.

The detrital input and removal treatment (DIRT) network: Insights into soil carbon stabilization.

Lajtha K, Bowden RD, Crow S, Fekete I, Kotroczó Z, Plante A, Simpson MJ, Nadelhoffer KJ.

Sci Total Environ. 2018 Nov 1;640-641:1112-1120. doi: 10.1016/j.scitotenv.2018.05.388. Epub 2018 Jun 6.

PMID:
30021276
8.

HARD-PnP: PnP Optimization Using a Hybrid Approximate Representation.

Hadfield SJ, Lebeda K, Bowden R.

IEEE Trans Pattern Anal Mach Intell. 2018 Feb 15. doi: 10.1109/TPAMI.2018.2806446. [Epub ahead of print]

PMID:
29994452
9.

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

Batty EM, Chaemchuen S, Blacksell S, Richards AL, Paris D, Bowden R, Chan C, Lachumanan R, Day N, Donnelly P, Chen S, Salje J.

PLoS Negl Trop Dis. 2018 Jun 6;12(6):e0006566. doi: 10.1371/journal.pntd.0006566. eCollection 2018 Jun.

10.

Biogeochemical probing of microbial communities in a basalt-hosted hot spring at Kverkfjöll volcano, Iceland.

Cousins CR, Fogel M, Bowden R, Crawford I, Boyce A, Cockell C, Gunn M.

Geobiology. 2018 Sep;16(5):507-521. doi: 10.1111/gbi.12291. Epub 2018 Jun 1.

PMID:
29856116
11.

Temperature fluctuations and maternal estrogens as critical factors for understanding temperature-dependent sex determination in nature.

Bowden RM, Paitz RT.

J Exp Zool A Ecol Integr Physiol. 2018 Apr;329(4-5):177-184. doi: 10.1002/jez.2183. Epub 2018 May 28. Review.

PMID:
29806743
12.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

13.

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

Martin HC, Batty EM, Hussin J, Westall P, Daish T, Kolomyjec S, Piazza P, Bowden R, Hawkins M, Grant T, Moritz C, Grutzner F, Gongora J, Donnelly P.

Mol Biol Evol. 2018 May 1;35(5):1238-1252. doi: 10.1093/molbev/msy041.

14.

Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat.

Mourad AMI, Sallam A, Belamkar V, Wegulo S, Bowden R, Jin Y, Mahdy E, Bakheit B, El-Wafaa AA, Poland J, Baenziger PS.

Front Plant Sci. 2018 Mar 27;9:380. doi: 10.3389/fpls.2018.00380. eCollection 2018.

15.

Impact of IFNL4 genotype on Interferon-stimulated Gene Expression during DAA therapy for Hepatitis C.

Ramamurthy N, Marchi E, Ansari MA, Pedergnana V, Mclean A, Hudson E; STOP HCV consortium, Bowden R, Spencer CCA, Barnes E, Klenerman P.

Hepatology. 2018 Mar 13. doi: 10.1002/hep.29877. [Epub ahead of print]

PMID:
29534310
16.

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

Méric G, Mageiros L, Pascoe B, Woodcock DJ, Mourkas E, Lamble S, Bowden R, Jolley KA, Raymond B, Sheppard SK.

Mol Ecol. 2018 Apr;27(7):1524-1540. doi: 10.1111/mec.14546. Epub 2018 Apr 2.

17.

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors.

Smith D, Magri A, Bonsall D, Ip CLC, Trebes A, Brown A, Piazza P, Bowden R, Nguyen D, Ansari MA, Simmonds P, Barnes E; STOP-HCV Consortium.

Hepatology. 2018 Feb 9. doi: 10.1002/hep.29837. [Epub ahead of print]

PMID:
29425396
18.

A practical solution for preserving single cells for RNA sequencing.

Attar M, Sharma E, Li S, Bryer C, Cubitt L, Broxholme J, Lockstone H, Kinchen J, Simmons A, Piazza P, Buck D, Livak KJ, Bowden R.

Sci Rep. 2018 Feb 1;8(1):2151. doi: 10.1038/s41598-018-20372-7.

19.

Extending the phenotype associated with the CSNK2A1-related Okur-Chung syndrome-A clinical study of 11 individuals.

Owen CI, Bowden R, Parker MJ, Patterson J, Patterson J, Price S, Sarkar A, Castle B, Deshpande C, Splitt M, Ghali N, Dean J, Green AJ, Crosby C; Deciphering Developmental Disorders Study, Tatton-Brown K.

Am J Med Genet A. 2018 May;176(5):1108-1114. doi: 10.1002/ajmg.a.38610. Epub 2018 Jan 31.

PMID:
29383814
20.

Introduction to ecoimmunology: An integrative approach.

Bowden RM, French SS, Demas GE.

J Exp Zool A Ecol Integr Physiol. 2017 Jun;327(5):219-221. doi: 10.1002/jez.2114. No abstract available.

PMID:
29356423
21.

Short heatwaves during fluctuating incubation regimes produce females under temperature-dependent sex determination with implications for sex ratios in nature.

Carter AW, Sadd BM, Tuberville TD, Paitz RT, Bowden RM.

Sci Rep. 2018 Jan 8;8(1):3. doi: 10.1038/s41598-017-17708-0.

22.

Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99.

Salcedo A, Rutter W, Wang S, Akhunova A, Bolus S, Chao S, Anderson N, De Soto MF, Rouse M, Szabo L, Bowden RL, Dubcovsky J, Akhunov E.

Science. 2017 Dec 22;358(6370):1604-1606. doi: 10.1126/science.aao7294.

23.

Severe infections emerge from commensal bacteria by adaptive evolution.

Young BC, Wu CH, Gordon NC, Cole K, Price JR, Liu E, Sheppard AE, Perera S, Charlesworth J, Golubchik T, Iqbal Z, Bowden R, Massey RC, Paul J, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wyllie DH, Wilson DJ.

Elife. 2017 Dec 19;6. pii: e30637. doi: 10.7554/eLife.30637.

24.

Physiologic Correlates of Interactions between Adult Male and Immature Long-tailed Macaques (Macaca fascicularis).

Bardi M, Prugh AM, Eubanks BT, Trexler K, Bowden RL, Evans S, Lambert KG, Huffman MA.

J Am Assoc Lab Anim Sci. 2017 Nov 1;56(6):718-728.

25.

Maternity Nurses' Perceptions of Implementation of the Ten Steps to Successful Breastfeeding.

Cunningham EM, Doyle EI, Bowden RG.

MCN Am J Matern Child Nurs. 2018 Jan/Feb;43(1):38-43. doi: 10.1097/NMC.0000000000000392.

PMID:
29215422
26.

Characterizing the distribution of steroid sulfatase during embryonic development: when and where might metabolites of maternal steroids be reactivated?

Paitz RT, Duffield KR, Bowden RM.

J Exp Biol. 2017 Dec 15;220(Pt 24):4567-4570. doi: 10.1242/jeb.167031. Epub 2017 Oct 26.

27.

Resistance Genes in Global Crop Breeding Networks.

Garrett KA, Andersen KF, Asche F, Bowden RL, Forbes GA, Kulakow PA, Zhou B.

Phytopathology. 2017 Oct;107(10):1268-1278. doi: 10.1094/PHYTO-03-17-0082-FI. Epub 2017 Aug 31.

28.

Long-term litter manipulation alters soil organic matter turnover in a temperate deciduous forest.

Wang JJ, Pisani O, Lin LH, Lun OOY, Bowden RD, Lajtha K, Simpson AJ, Simpson MJ.

Sci Total Environ. 2017 Dec 31;607-608:865-875. doi: 10.1016/j.scitotenv.2017.07.063. Epub 2017 Jul 27.

PMID:
28711848
29.

Quantitative Trait Loci for Slow-Rusting Resistance to Leaf Rust in Doubled-Haploid Wheat Population CI13227 × Lakin.

Lu Y, Bowden RL, Zhang G, Xu X, Fritz AK, Bai G.

Phytopathology. 2017 Nov;107(11):1372-1380. doi: 10.1094/PHYTO-09-16-0347-R. Epub 2017 Aug 18.

PMID:
28589757
30.

Seasonal shifts in sex ratios are mediated by maternal effects and fluctuating incubation temperatures.

Carter AW, Bowden RM, Paitz RT.

Funct Ecol. 2017 Apr;31(4):876-884. doi: 10.1111/1365-2435.12801. Epub 2016 Dec 19.

31.

Divergent and convergent modes of interaction between wheat and Puccinia graminis f. sp. tritici isolates revealed by the comparative gene co-expression network and genome analyses.

Rutter WB, Salcedo A, Akhunova A, He F, Wang S, Liang H, Bowden RL, Akhunov E.

BMC Genomics. 2017 Apr 12;18(1):291. doi: 10.1186/s12864-017-3678-6.

32.

Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.

Rolo J, Worning P, Boye Nielsen J, Sobral R, Bowden R, Bouchami O, Damborg P, Guardabassi L, Perreten V, Westh H, Tomasz A, de Lencastre H, Miragaia M.

PLoS Genet. 2017 Apr 10;13(4):e1006674. doi: 10.1371/journal.pgen.1006674. eCollection 2017 Apr.

33.

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

Ansari MA, Pedergnana V, L C Ip C, Magri A, Von Delft A, Bonsall D, Chaturvedi N, Bartha I, Smith D, Nicholson G, McVean G, Trebes A, Piazza P, Fellay J, Cooke G, Foster GR; STOP-HCV Consortium, Hudson E, McLauchlan J, Simmonds P, Bowden R, Klenerman P, Barnes E, Spencer CCA.

Nat Genet. 2017 May;49(5):666-673. doi: 10.1038/ng.3835. Epub 2017 Apr 10.

34.

A Pilot Study to Examine the Effects of an Anti-inflammatory Supplement on Eicosanoid Derivatives in Patients with Chronic Kidney Disease.

Shelmadine BD, Bowden RG, Moreillon JJ, Cooke MB, Yang P, Deike E, Griggs JO, Wilson RL.

J Altern Complement Med. 2017 Aug;23(8):632-638. doi: 10.1089/acm.2016.0007. Epub 2017 Apr 4.

PMID:
28375641
35.

Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).

Rolo J, Worning P, Nielsen JB, Bowden R, Bouchami O, Damborg P, Guardabassi L, Perreten V, Tomasz A, Westh H, de Lencastre H, Miragaia M.

Antimicrob Agents Chemother. 2017 May 24;61(6). pii: e02302-16. doi: 10.1128/AAC.02302-16. Print 2017 Jun.

36.

TMAGIC: A Model-Free 3D Tracker.

Lebeda K, Hadfield S, Bowden R.

IEEE Trans Image Process. 2017 Sep;26(9):4378-4388. doi: 10.1109/TIP.2017.2675343. Epub 2017 Mar 1.

PMID:
28362608
37.

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.

Murray S, Pascoe B, Méric G, Mageiros L, Yahara K, Hitchings MD, Friedmann Y, Wilkinson TS, Gormley FJ, Mack D, Bray JE, Lamble S, Bowden R, Jolley KA, Maiden MCJ, Wendlandt S, Schwarz S, Corander J, Fitzgerald JR, Sheppard SK.

Genome Biol Evol. 2017 Apr 1;9(4):830-842. doi: 10.1093/gbe/evx037.

38.

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease.

Sandor C, Robertson P, Lang C, Heger A, Booth H, Vowles J, Witty L, Bowden R, Hu M, Cowley SA, Wade-Martins R, Webber C.

Hum Mol Genet. 2017 Feb 1;26(3):552-566. doi: 10.1093/hmg/ddw412.

39.

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq.

Wills QF, Mellado-Gomez E, Nolan R, Warner D, Sharma E, Broxholme J, Wright B, Lockstone H, James W, Lynch M, Gonzales M, West J, Leyrat A, Padilla-Parra S, Filippi S, Holmes C, Moore MD, Bowden R.

BMC Genomics. 2017 Jan 7;18(1):53. doi: 10.1186/s12864-016-3445-0.

40.

The effect of environmental temperature on reptilian peripheral blood B cell functions.

Palackdharry S, Sadd BM, Vogel LA, Bowden RM.

Horm Behav. 2017 Feb;88:87-94. doi: 10.1016/j.yhbeh.2016.10.008. Epub 2016 Nov 2.

PMID:
27816625
41.

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance.

van Hal SJ, Ip CL, Ansari MA, Wilson DJ, Espedido BA, Jensen SO, Bowden R.

Microb Genom. 2016 Jan 19;2(1). doi: 10.1099/mgen.0.000048.

42.

Effects of Fish Oil Supplementation on Postresistance Exercise Muscle Soreness.

Tinsley GM, Gann JJ, Huber SR, Andre TL, La Bounty PM, Bowden RG, Gordon PM, Grandjean PW.

J Diet Suppl. 2016 Jul 21:1-12. [Epub ahead of print]

PMID:
27441600
43.

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

Thomson E, Ip CL, Badhan A, Christiansen MT, Adamson W, Ansari MA, Bibby D, Breuer J, Brown A, Bowden R, Bryant J, Bonsall D, Da Silva Filipe A, Hinds C, Hudson E, Klenerman P, Lythgow K, Mbisa JL, McLauchlan J, Myers R, Piazza P, Roy S, Trebes A, Sreenu VB, Witteveldt J; STOP-HCV Consortium, Barnes E, Simmonds P.

J Clin Microbiol. 2016 Oct;54(10):2470-84. doi: 10.1128/JCM.00330-16. Epub 2016 Jul 6.

44.

Pre- and Postnatal Effects of Corticosterone on Fitness-Related Traits and the Timing of Endogenous Corticosterone Production in a Songbird.

Strange MS, Bowden RM, Thompson CF, Sakaluk SK.

J Exp Zool A Ecol Genet Physiol. 2016 Jul;325(6):347-59. doi: 10.1002/jez.2022. Epub 2016 Jun 9.

45.

Elevated corticosterone during egg production elicits increased maternal investment and promotes nestling growth in a wild songbird.

Bowers EK, Bowden RM, Thompson CF, Sakaluk SK.

Horm Behav. 2016 Jul;83:6-13. doi: 10.1016/j.yhbeh.2016.05.010. Epub 2016 May 14.

46.

Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK.

PLoS One. 2016 Apr 21;11(4):e0154510. doi: 10.1371/journal.pone.0154510. eCollection 2016. No abstract available.

47.

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR.

Bonsall D, Gregory WF, Ip CL, Donfield S, Iles J, Ansari MA, Piazza P, Trebes A, Brown A, Frater J, Pybus OG, Goulder P, Klenerman P, Bowden R, Gomperts ED, Barnes E, Kapoor A, Sharp CP, Simmonds P.

Emerg Infect Dis. 2016 Apr;22(4):671-8. doi: 10.3201/eid2204.151812.

48.

Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

Harris LG, Murray S, Pascoe B, Bray J, Meric G, Mageiros L, Wilkinson TS, Jeeves R, Rohde H, Schwarz S, de Lencastre H, Miragaia M, Rolo J, Bowden R, Jolley KA, Maiden MC, Mack D, Sheppard SK.

PLoS One. 2016 Mar 15;11(3):e0151240. doi: 10.1371/journal.pone.0151240. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154510. Magerios, Leonardos [corrected to Mageiros, Leonardos].

49.

MinION Analysis and Reference Consortium: Phase 1 data release and analysis.

Ip CLC, Loose M, Tyson JR, de Cesare M, Brown BL, Jain M, Leggett RM, Eccles DA, Zalunin V, Urban JM, Piazza P, Bowden RJ, Paten B, Mwaigwisya S, Batty EM, Simpson JT, Snutch TP, Birney E, Buck D, Goodwin S, Jansen HJ, O'Grady J, Olsen HE; MinION Analysis and Reference Consortium.

F1000Res. 2015 Oct 15;4:1075. doi: 10.12688/f1000research.7201.1. eCollection 2015.

50.

How important is the eggshell as a source for initial acquisition of Salmonella in hatchling turtles?

Holgersson MC, Nichols WA, Paitz RT, Bowden RM.

J Exp Zool A Ecol Genet Physiol. 2016 Feb;325(2):142-8. doi: 10.1002/jez.2004. Epub 2016 Jan 28.

PMID:
26817746

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