Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 26

1.

Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination.

Lindesmith LC, McDaniel JR, Changela A, Verardi R, Kerr SA, Costantini V, Brewer-Jensen PD, Mallory ML, Voss WN, Boutz DR, Blazeck JJ, Ippolito GC, Vinje J, Kwong PD, Georgiou G, Baric RS.

Immunity. 2019 Jun 18;50(6):1530-1541.e8. doi: 10.1016/j.immuni.2019.05.007.

2.

Persistent Antibody Clonotypes Dominate the Serum Response to Influenza over Multiple Years and Repeated Vaccinations.

Lee J, Paparoditis P, Horton AP, Frühwirth A, McDaniel JR, Jung J, Boutz DR, Hussein DA, Tanno Y, Pappas L, Ippolito GC, Corti D, Lanzavecchia A, Georgiou G.

Cell Host Microbe. 2019 Mar 13;25(3):367-376.e5. doi: 10.1016/j.chom.2019.01.010. Epub 2019 Feb 19.

PMID:
30795981
3.

Reduced Protein Expression in a Virus Attenuated by Codon Deoptimization.

Jack BR, Boutz DR, Paff ML, Smith BL, Bull JJ, Wilke CO.

G3 (Bethesda). 2017 Sep 7;7(9):2957-2968. doi: 10.1534/g3.117.041020.

4.

The E. coli molecular phenotype under different growth conditions.

Caglar MU, Houser JR, Barnhart CS, Boutz DR, Carroll SM, Dasgupta A, Lenoir WF, Smith BL, Sridhara V, Sydykova DK, Vander Wood D, Marx CJ, Marcotte EM, Barrick JE, Wilke CO.

Sci Rep. 2017 Apr 18;7:45303. doi: 10.1038/srep45303.

5.

Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions.

Brown CW, Sridhara V, Boutz DR, Person MD, Marcotte EM, Barrick JE, Wilke CO.

BMC Genomics. 2017 Apr 17;18(1):301. doi: 10.1186/s12864-017-3676-8.

6.

Murine Cytomegalovirus Deubiquitinase Regulates Viral Chemokine Levels To Control Inflammation and Pathogenesis.

Hilterbrand AT, Boutz DR, Marcotte EM, Upton JW.

MBio. 2017 Jan 17;8(1). pii: e01864-16. doi: 10.1128/mBio.01864-16.

7.

Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination.

Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee CH, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, Druz A, Zhang B, Zhang Y, Wang L, Kong WP, Park D, Popova LI, Dekker CL, Davis MM, Carter CE, Ross TM, Ellington AD, Wilson PC, Marcotte EM, Mascola JR, Ippolito GC, Krammer F, Quake SR, Kwong PD, Georgiou G.

Nat Med. 2016 Dec;22(12):1456-1464. doi: 10.1038/nm.4224. Epub 2016 Nov 7.

8.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes.

Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A.

Data Brief. 2015 Dec 12;6:715-21. doi: 10.1016/j.dib.2015.11.062. eCollection 2016 Mar.

9.

Panorama of ancient metazoan macromolecular complexes.

Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A.

Nature. 2015 Sep 17;525(7569):339-44. doi: 10.1038/nature14877. Epub 2015 Sep 7.

10.

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation.

Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO.

PLoS Comput Biol. 2015 Aug 14;11(8):e1004400. doi: 10.1371/journal.pcbi.1004400. eCollection 2015 Aug.

11.

Proteomic identification of monoclonal antibodies from serum.

Boutz DR, Horton AP, Wine Y, Lavinder JJ, Georgiou G, Marcotte EM.

Anal Chem. 2014 May 20;86(10):4758-66. doi: 10.1021/ac4037679. Epub 2014 May 1.

12.

A proteomic survey of widespread protein aggregation in yeast.

O'Connell JD, Tsechansky M, Royal A, Boutz DR, Ellington AD, Marcotte EM.

Mol Biosyst. 2014 Apr;10(4):851-861. doi: 10.1039/c3mb70508k. Epub 2014 Feb 3.

13.

Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness.

Hammerling MJ, Ellefson JW, Boutz DR, Marcotte EM, Ellington AD, Barrick JE.

Nat Chem Biol. 2014 Mar;10(3):178-80. doi: 10.1038/nchembio.1450. Epub 2014 Feb 2.

14.

Identification and characterization of the constituent human serum antibodies elicited by vaccination.

Lavinder JJ, Wine Y, Giesecke C, Ippolito GC, Horton AP, Lungu OI, Hoi KH, DeKosky BJ, Murrin EM, Wirth MM, Ellington AD, Dörner T, Marcotte EM, Boutz DR, Georgiou G.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2259-64. doi: 10.1073/pnas.1317793111. Epub 2014 Jan 27.

15.

Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response.

Wine Y, Boutz DR, Lavinder JJ, Miklos AE, Hughes RA, Hoi KH, Jung ST, Horton AP, Murrin EM, Ellington AD, Marcotte EM, Georgiou G.

Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2993-8. doi: 10.1073/pnas.1213737110. Epub 2013 Feb 4.

16.

A census of human soluble protein complexes.

Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, Dar VU, Bezginov A, Clark GW, Wu GC, Wodak SJ, Tillier ER, Paccanaro A, Marcotte EM, Emili A.

Cell. 2012 Aug 31;150(5):1068-81. doi: 10.1016/j.cell.2012.08.011.

17.

Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry.

Orr SJ, Boutz DR, Wang R, Chronis C, Lea NC, Thayaparan T, Hamilton E, Milewicz H, Blanc E, Mufti GJ, Marcotte EM, Thomas NS.

Mol Syst Biol. 2012 Mar 13;8:573. doi: 10.1038/msb.2012.5.

18.

Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122.

Boutz DR, Collins PJ, Suresh U, Lu M, Ramírez CM, Fernández-Hernando C, Huang Y, Abreu Rde S, Le SY, Shapiro BA, Liu AM, Luk JM, Aldred SF, Trinklein ND, Marcotte EM, Penalva LO.

J Biol Chem. 2011 May 20;286(20):18066-78. doi: 10.1074/jbc.M110.196451. Epub 2011 Mar 14.

19.

Protein abundances are more conserved than mRNA abundances across diverse taxa.

Laurent JM, Vogel C, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM.

Proteomics. 2010 Dec;10(23):4209-12. doi: 10.1002/pmic.201000327.

20.

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line.

Vogel C, Abreu Rde S, Ko D, Le SY, Shapiro BA, Burns SC, Sandhu D, Boutz DR, Marcotte EM, Penalva LO.

Mol Syst Biol. 2010 Aug 24;6:400. doi: 10.1038/msb.2010.59.

21.

Ultrafast ultraviolet photodissociation at 193 nm and its applicability to proteomic workflows.

Madsen JA, Boutz DR, Brodbelt JS.

J Proteome Res. 2010 Aug 6;9(8):4205-14. doi: 10.1021/pr100515x.

22.

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs.

Ramani AK, Li Z, Hart GT, Carlson MW, Boutz DR, Marcotte EM.

Mol Syst Biol. 2008;4:180. doi: 10.1038/msb.2008.19. Epub 2008 Apr 15.

23.

Discovery of a thermophilic protein complex stabilized by topologically interlinked chains.

Boutz DR, Cascio D, Whitelegge J, Perry LJ, Yeates TO.

J Mol Biol. 2007 May 18;368(5):1332-44. Epub 2007 Mar 6.

24.

The genomics of disulfide bonding and protein stabilization in thermophiles.

Beeby M, O'Connor BD, Ryttersgaard C, Boutz DR, Perry LJ, Yeates TO.

PLoS Biol. 2005 Sep;3(9):e309. Epub 2005 Aug 23.

25.

Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds.

Mallick P, Boutz DR, Eisenberg D, Yeates TO.

Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9679-84. Epub 2002 Jul 9.

26.

Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its L-isoaspartyl peptide substrate.

Griffith SC, Sawaya MR, Boutz DR, Thapar N, Katz JE, Clarke S, Yeates TO.

J Mol Biol. 2001 Nov 9;313(5):1103-16.

PMID:
11700066

Supplemental Content

Loading ...
Support Center