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Items: 11

1.

The genome-wide dynamics of purging during selfing in maize.

Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer MC, Seymour DK, Doebley JF, Liu Q, Gaut BS.

Nat Plants. 2019 Sep;5(9):980-990. doi: 10.1038/s41477-019-0508-7. Epub 2019 Sep 2.

PMID:
31477888
2.

Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention.

Roessler K, Bousios A, Meca E, Gaut BS.

Genome Biol Evol. 2018 Mar 1;10(3):803-815. doi: 10.1093/gbe/evy043.

3.

Considerations and complications of mapping small RNA high-throughput data to transposable elements.

Bousios A, Gaut BS, Darzentas N.

Mob DNA. 2017 Feb 15;8:3. doi: 10.1186/s13100-017-0086-z. eCollection 2017.

4.

Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts.

Bousios A, Gaut BS.

Curr Opin Plant Biol. 2016 Apr;30:123-33. doi: 10.1016/j.pbi.2016.02.009. Epub 2016 Mar 4. Review.

PMID:
26950253
5.

A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response.

Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS.

Genome Res. 2016 Feb;26(2):226-37. doi: 10.1101/gr.193763.115. Epub 2015 Dec 2.

6.

Sirevirus LTR retrotransposons: phylogenetic misconceptions in the plant world.

Bousios A, Darzentas N.

Mob DNA. 2013 Mar 4;4(1):9. doi: 10.1186/1759-8753-4-9.

7.

MASiVEdb: the Sirevirus Plant Retrotransposon Database.

Bousios A, Minga E, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N.

BMC Genomics. 2012 Apr 30;13:158. doi: 10.1186/1471-2164-13-158.

8.

The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story.

Bousios A, Kourmpetis YA, Pavlidis P, Minga E, Tsaftaris A, Darzentas N.

Plant J. 2012 Feb;69(3):475-88. doi: 10.1111/j.1365-313X.2011.04806.x. Epub 2011 Nov 8.

9.

MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences.

Darzentas N, Bousios A, Apostolidou V, Tsaftaris AS.

Bioinformatics. 2010 Oct 1;26(19):2452-4. doi: 10.1093/bioinformatics/btq454. Epub 2010 Aug 9.

PMID:
20696734
10.

Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?

Bousios A, Darzentas N, Tsaftaris A, Pearce SR.

BMC Genomics. 2010 Feb 4;11:89. doi: 10.1186/1471-2164-11-89.

11.

Absence of close-facing retrotransposons: a comparison of molecular data and theory.

Bousios A, Waxman D, Pearce SR.

J Theor Biol. 2010 May 21;264(2):205-10. doi: 10.1016/j.jtbi.2009.11.014. Epub 2009 Dec 4.

PMID:
19962995

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