Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 78

1.

Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing.

Bouquet J, Li T, Gardy JL, Kang X, Stevens S, Stevens J, VanNess M, Snell C, Potts J, Miller RR, Morshed M, McCabe M, Parker S, Uyaguari M, Tang P, Steiner T, Chan WS, De Souza AM, Mattman A, Patrick DM, Chiu CY.

PLoS One. 2019 Mar 21;14(3):e0212193. doi: 10.1371/journal.pone.0212193. eCollection 2019.

2.

Differentiation enhances Zika virus infection of neuronal brain cells.

Sánchez-San Martín C, Li T, Bouquet J, Streithorst J, Yu G, Paranjpe A, Chiu CY.

Sci Rep. 2018 Sep 28;8(1):14543. doi: 10.1038/s41598-018-32400-7.

3.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

4.

Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions.

Bouquet JM, Troedsson C, Novac A, Reeve M, Lechtenbörger AK, Massart W, Skaar KS, Aasjord A, Dupont S, Thompson EM.

PLoS One. 2018 Jan 3;13(1):e0190625. doi: 10.1371/journal.pone.0190625. eCollection 2018.

5.

Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection.

Chiu CY, Sánchez-San Martín C, Bouquet J, Li T, Yagi S, Tamhankar M, Hodara VL, Parodi LM, Somasekar S, Yu G, Giavedoni LD, Tardif S, Patterson J.

Sci Rep. 2017 Dec 7;7(1):17126. doi: 10.1038/s41598-017-17067-w.

6.

Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen.

Bouquet J, Melgar M, Swei A, Delwart E, Lane RS, Chiu CY.

Sci Rep. 2017 Sep 25;7(1):12234. doi: 10.1038/s41598-017-12047-6.

7.

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease.

Legoff J, Resche-Rigon M, Bouquet J, Robin M, Naccache SN, Mercier-Delarue S, Federman S, Samayoa E, Rousseau C, Piron P, Kapel N, Simon F, Socié G, Chiu CY.

Nat Med. 2017 Sep;23(9):1080-1085. doi: 10.1038/nm.4380. Epub 2017 Jul 31.

PMID:
28759053
8.

Selective trihydroxylated azepane inhibitors of NagZ, a glycosidase involved in Pseudomonas aeruginosa resistance to β-lactam antibiotics.

Bouquet J, King DT, Vadlamani G, Benzie GR, Iorga B, Ide D, Adachi I, Kato A, Vocadlo DJ, Mark BL, Blériot Y, Désiré J.

Org Biomol Chem. 2017 May 31;15(21):4609-4619. doi: 10.1039/c7ob00838d.

PMID:
28513749
9.

RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease.

Bouquet J, Gardy JL, Brown S, Pfeil J, Miller RR, Morshed M, Avina-Zubieta A, Shojania K, McCabe M, Parker S, Uyaguari M, Federman S, Tang P, Steiner T, Otterstater M, Holt R, Moore R, Chiu CY, Patrick DM; Complex Chronic Disease Study Group.

Clin Infect Dis. 2017 Feb 15;64(4):476-481. doi: 10.1093/cid/ciw767.

10.

Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease.

Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY.

MBio. 2016 Feb 12;7(1):e00100-16. doi: 10.1128/mBio.00100-16.

11.

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.

Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY.

Genome Med. 2016 Jan 11;8(1):1. doi: 10.1186/s13073-015-0257-9. No abstract available.

12.

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.

Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY.

Genome Med. 2015 Dec 1;7:113. doi: 10.1186/s13073-015-0235-2. Erratum in: Genome Med. 2016;8(1):1. Klenschmidt-DeMasters, Bette K [corrected to Kleinschmidt-DeMasters, Bette K].

13.

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.

Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY.

Genome Med. 2015 Sep 29;7:99. doi: 10.1186/s13073-015-0220-9.

14.

Quantitative proteomics identifies host factors modulated during acute hepatitis E virus infection in the swine model.

Rogée S, Le Gall M, Chafey P, Bouquet J, Cordonnier N, Frederici C, Pavio N.

J Virol. 2015 Jan;89(1):129-43. doi: 10.1128/JVI.02208-14. Epub 2014 Oct 15.

15.

Oikopleura dioica culturing made easy: a low-cost facility for an emerging animal model in EvoDevo.

Martí-Solans J, Ferrández-Roldán A, Godoy-Marín H, Badia-Ramentol J, Torres-Aguila NP, Rodríguez-Marí A, Bouquet JM, Chourrout D, Thompson EM, Albalat R, Cañestro C.

Genesis. 2015 Jan;53(1):183-93. doi: 10.1002/dvg.22800. Epub 2014 Jul 21.

PMID:
25044679
16.

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.

Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY.

Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4.

17.

Future climate scenarios for a coastal productive planktonic food web resulting in microplankton phenology changes and decreased trophic transfer efficiency.

Calbet A, Sazhin AF, Nejstgaard JC, Berger SA, Tait ZS, Olmos L, Sousoni D, Isari S, Martínez RA, Bouquet JM, Thompson EM, Båmstedt U, Jakobsen HH.

PLoS One. 2014 Apr 10;9(4):e94388. doi: 10.1371/journal.pone.0094388. eCollection 2014.

18.

New models of hepatitis E virus replication in human and porcine hepatocyte cell lines.

Rogée S, Talbot N, Caperna T, Bouquet J, Barnaud E, Pavio N.

J Gen Virol. 2013 Mar;94(Pt 3):549-58. doi: 10.1099/vir.0.049858-0. Epub 2012 Nov 21.

PMID:
23175242
19.

Genetic characterization and codon usage bias of full-length Hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution.

Bouquet J, Cherel P, Pavio N.

Infect Genet Evol. 2012 Dec;12(8):1842-53. doi: 10.1016/j.meegid.2012.07.021. Epub 2012 Aug 21.

PMID:
22951575
20.

Identical consensus sequence and conserved genomic polymorphism of hepatitis E virus during controlled interspecies transmission.

Bouquet J, Cheval J, Rogée S, Pavio N, Eloit M.

J Virol. 2012 Jun;86(11):6238-45. doi: 10.1128/JVI.06843-11. Epub 2012 Mar 28.

21.

Biological activities of nitidine, a potential anti-malarial lead compound.

Bouquet J, Rivaud M, Chevalley S, Deharo E, Jullian V, Valentin A.

Malar J. 2012 Mar 9;11:67. doi: 10.1186/1475-2875-11-67.

22.

Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics.

Yadetie F, Butcher S, Førde HE, Campsteijn C, Bouquet JM, Karlsen OA, Denoeud F, Metpally R, Thompson EM, Manak JR, Goksøyr A, Chourrout D.

BMC Genomics. 2012 Feb 2;13:55. doi: 10.1186/1471-2164-13-55.

23.

Close similarity between sequences of hepatitis E virus recovered from humans and swine, France, 2008-2009.

Bouquet J, Tessé S, Lunazzi A, Eloit M, Rose N, Nicand E, Pavio N.

Emerg Infect Dis. 2011 Nov;17(11):2018-25. doi: 10.3201/eid1711.110616.

24.

Evolutionary changes in the notochord genetic toolkit: a comparative analysis of notochord genes in the ascidian Ciona and the larvacean Oikopleura.

Kugler JE, Kerner P, Bouquet JM, Jiang D, Di Gregorio A.

BMC Evol Biol. 2011 Jan 20;11:21. doi: 10.1186/1471-2148-11-21.

25.

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.

Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, Cross I, Yadetie F, Muffato M, Louis A, Butcher S, Tsagkogeorga G, Konrad A, Singh S, Jensen MF, Huynh Cong E, Eikeseth-Otteraa H, Noel B, Anthouard V, Porcel BM, Kachouri-Lafond R, Nishino A, Ugolini M, Chourrout P, Nishida H, Aasland R, Huzurbazar S, Westhof E, Delsuc F, Lehrach H, Reinhardt R, Weissenbach J, Roy SW, Artiguenave F, Postlethwait JH, Manak JR, Thompson EM, Jaillon O, Du Pasquier L, Boudinot P, Liberles DA, Volff JN, Philippe H, Lenhard B, Roest Crollius H, Wincker P, Chourrout D.

Science. 2010 Dec 3;330(6009):1381-5. doi: 10.1126/science.1194167. Epub 2010 Nov 18.

26.

Functional specialization of cellulose synthase genes of prokaryotic origin in chordate larvaceans.

Sagane Y, Zech K, Bouquet JM, Schmid M, Bal U, Thompson EM.

Development. 2010 May;137(9):1483-92. doi: 10.1242/dev.044503. Epub 2010 Mar 24.

27.

Growth monitoring to detect children with cystic fibrosis.

van Dommelen P, Grote FK, Oostdijk W, de Muinck Keizer-Schrama SM, Bouquet J, Hendriks JJ, Kouwenberg J, Verkerk PH, van Buuren S, Wit JM.

Horm Res. 2009;72(4):218-24. doi: 10.1159/000236083. Epub 2009 Sep 29.

PMID:
19786793
28.

Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica.

Bouquet JM, Spriet E, Troedsson C, Otterå H, Chourrout D, Thompson EM.

J Plankton Res. 2009 Apr;31(4):359-370. Epub 2009 Jan 16.

29.

Embryology of a planktonic tunicate reveals traces of sessility.

Stach T, Winter J, Bouquet JM, Chourrout D, Schnabel R.

Proc Natl Acad Sci U S A. 2008 May 20;105(20):7229-34. doi: 10.1073/pnas.0710196105. Epub 2008 May 19. Erratum in: Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10268.

30.

Endostyle cell recruitment as a frame of reference for development and growth in the Urochordate Oikopleura dioica.

Troedsson C, Ganot P, Bouquet JM, Aksnes DL, Thompson EM.

Biol Bull. 2007 Dec;213(3):325-34.

PMID:
18083972
31.

Rapidly evolving lamins in a chordate, Oikopleura dioica, with unusual nuclear architecture.

Clarke T, Bouquet JM, Fu X, Kallesøe T, Schmid M, Thompson EM.

Gene. 2007 Jul 1;396(1):159-69. Epub 2007 Mar 23.

PMID:
17449201
32.

The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production.

Ganot P, Bouquet JM, Kallesøe T, Thompson EM.

Dev Biol. 2007 Feb 15;302(2):591-600. Epub 2006 Oct 21.

34.

Chemokine production by buccal epithelium as a distinctive feature of pediatric Crohn disease.

Damen GM, Hol J, de Ruiter L, Bouquet J, Sinaasappel M, van der Woude J, Laman JD, Hop WC, Büller HA, Escher JC, Nieuwenhuis EE.

J Pediatr Gastroenterol Nutr. 2006 Feb;42(2):142-9.

PMID:
16456405
35.

A population-based nested case control study on recurrent pneumonias in children with severe generalized cerebral palsy: ethical considerations of the design and representativeness of the study sample.

Veugelers R, Calis EA, Penning C, Verhagen A, Bernsen R, Bouquet J, Benninga MA, Merkus PJ, Arets HG, Tibboel D, Evenhuis HM.

BMC Pediatr. 2005 Jul 19;5:25.

36.
37.

Infliximab therapy in 30 patients with refractory pediatric crohn disease with and without fistulas in The Netherlands.

de Ridder L, Escher JC, Bouquet J, Schweizer JJ, Rings EH, Tolboom JJ, Houwen RH, Norbruis OF, Derkx BH, Taminiau JA.

J Pediatr Gastroenterol Nutr. 2004 Jul;39(1):46-52.

PMID:
15187780
38.

Bronchiectasis in children after renal or liver transplantation: a report of five cases.

Pijnenburg MW, Cransberg K, Wolff E, Bouquet J, Merkus PJ.

Pediatr Transplant. 2004 Feb;8(1):71-4.

PMID:
15009844
39.

Mutations in SRD5B1 (AKR1D1), the gene encoding delta(4)-3-oxosteroid 5beta-reductase, in hepatitis and liver failure in infancy.

Lemonde HA, Custard EJ, Bouquet J, Duran M, Overmars H, Scambler PJ, Clayton PT.

Gut. 2003 Oct;52(10):1494-9.

40.

Measuring quality of life in children with inflammatory bowel disease: the impact-II (NL).

Loonen HJ, Grootenhuis MA, Last BF, de Haan RJ, Bouquet J, Derkx BH.

Qual Life Res. 2002 Feb;11(1):47-56.

PMID:
12003055
41.

Normal ranges of 24-hour pH-metry established in corrected esophageal atresia.

Bergmeijer JH, Bouquet J, Hazebroek FW.

J Pediatr Gastroenterol Nutr. 1999 Feb;28(2):162-3.

PMID:
9932848
42.

Bone mineral density and nutritional status in children with chronic inflammatory bowel disease.

Boot AM, Bouquet J, Krenning EP, de Muinck Keizer-Schrama SM.

Gut. 1998 Feb;42(2):188-94.

43.

Determinants of body composition measured by dual-energy X-ray absorptiometry in Dutch children and adolescents.

Boot AM, Bouquet J, de Ridder MA, Krenning EP, de Muinck Keizer-Schrama SM.

Am J Clin Nutr. 1997 Aug;66(2):232-8.

PMID:
9250099
44.

Clinical use of acid steatocrit.

Van den Neucker A, Pestel N, Tran TM, Forget PP, Veeze HJ, Bouquet J, Sinaasappel M.

Acta Paediatr. 1997 May;86(5):466-9.

PMID:
9183483
45.

Fecal polyamine concentration in children with and without nutrient malabsorption.

Forget P, Sinaasappel M, Bouquet J, Deutz NE, Smeets C.

J Pediatr Gastroenterol Nutr. 1997 Mar;24(3):285-8.

PMID:
9138174
46.

[Favorable results of percutaneous endoscopic gastrostomy in children in need of long-term tube feeding].

Bergmeijer JH, Postuma MC, Madern GC, Bouquet J.

Ned Tijdschr Geneeskd. 1997 Feb 1;141(5):241-3. Dutch.

PMID:
9064542
47.

In vivo measurement of chloride and water secretion in the jejunum of cystic fibrosis patients.

Teune TM, Timmers-Reker AJ, Bouquet J, Bijman J, De Jonge HR, Sinaasappel M.

Pediatr Res. 1996 Oct;40(4):522-7.

PMID:
8888277
48.

Screening for coeliac disease in Dutch children with associated diseases.

George EK, Mearin ML, Bouquet J, von Blomberg BM, Stapel SO, van Elburg RM, de Graaf EA, Hertzberger-ten Cate R, van Suijlekom-Smith LW, Reeser HM, Oostdijk W.

Acta Paediatr Suppl. 1996 May;412:52-3.

PMID:
8783759
49.

High frequency of celiac disease in Down syndrome.

George EK, Mearin ML, Bouquet J, von Blomberg BM, Stapel SO, van Elburg RM, de Graaf EA.

J Pediatr. 1996 Apr;128(4):555-7.

PMID:
8618192
50.

Efficacy of a recombinant fowl pox-based Newcastle disease virus vaccine candidate against velogenic and respiratory challenge.

Taylor J, Christensen L, Gettig R, Goebel J, Bouquet JF, Mickle TR, Paoletti E.

Avian Dis. 1996 Jan-Mar;40(1):173-80.

PMID:
8713031

Supplemental Content

Loading ...
Support Center