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Items: 16

1.

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations.

Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N, Armanini F, Manghi P, Bonham K, Zolfo M, De Filippis F, Magnabosco C, Bonneau R, Lusingu J, Amuasi J, Reinhard K, Rattei T, Boulund F, Engstrand L, Zink A, Collado MC, Littman DR, Eibach D, Ercolini D, Rota-Stabelli O, Huttenhower C, Maixner F, Segata N.

Cell Host Microbe. 2019 Sep 24. pii: S1931-3128(19)30427-5. doi: 10.1016/j.chom.2019.08.018. [Epub ahead of print]

2.

Identification and reconstruction of novel antibiotic resistance genes from metagenomes.

Berglund F, Österlund T, Boulund F, Marathe NP, Larsson DGJ, Kristiansson E.

Microbiome. 2019 Apr 1;7(1):52. doi: 10.1186/s40168-019-0670-1.

3.

Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.

Karlsson R, Gonzales-Siles L, Gomila M, Busquets A, Salvà-Serra F, Jaén-Luchoro D, Jakobsson HE, Karlsson A, Boulund F, Kristiansson E, Moore ERB.

PLoS One. 2018 Dec 10;13(12):e0208804. doi: 10.1371/journal.pone.0208804. eCollection 2018.

4.

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets.

Boulund F, Berglund F, Flach CF, Bengtsson-Palme J, Marathe NP, Larsson DGJ, Kristiansson E.

BMC Genomics. 2017 Sep 2;18(1):682. doi: 10.1186/s12864-017-4064-0.

5.

Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.

Boulund F, Karlsson R, Gonzales-Siles L, Johnning A, Karami N, Al-Bayati O, Åhrén C, Moore ERB, Kristiansson E.

Mol Cell Proteomics. 2017 Jun;16(6):1052-1063. doi: 10.1074/mcp.M116.061721. Epub 2017 Apr 18.

6.

Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F.

Jakobsson HE, Salvà-Serra F, Thorell K, Karlsson R, Gonzales-Silès L, Boulund F, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2017 Apr 6;5(14). pii: e00125-17. doi: 10.1128/genomeA.00125-17.

7.

Draft Genome Sequence of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strain CCUG 62462, Isolated from a Urine Sample.

Johnning A, Jakobsson HE, Boulund F, Salvà-Serra F, Moore ER, Åhrén C, Karami N, Kristiansson E.

Genome Announc. 2016 Dec 15;4(6). pii: e01382-16. doi: 10.1128/genomeA.01382-16.

8.

Strategies to improve usability and preserve accuracy in biological sequence databases.

Bengtsson-Palme J, Boulund F, Edström R, Feizi A, Johnning A, Jonsson VA, Karlsson FH, Pal C, Pereira MB, Rehammar A, Sanchez J, Sanli K, Thorell K.

Proteomics. 2016 Sep;16(18):2454-60. doi: 10.1002/pmic.201600034.

PMID:
27528420
9.

Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.

Jakobsson HE, Salvà-Serra F, Thorell K, Gonzales-Siles L, Boulund F, Karlsson R, Sikora P, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Jun 16;4(3). pii: e00552-16. doi: 10.1128/genomeA.00552-16.

10.

Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.

Salvà-Serra F, Jakobsson HE, Thorell K, Gonzales-Siles L, Hallbäck ET, Jaén-Luchoro D, Boulund F, Sikora P, Karlsson R, Svensson L, Bennasar A, Engstrand L, Kristiansson E, Moore ER.

Genome Announc. 2016 Mar 24;4(2). pii: e00175-16. doi: 10.1128/genomeA.00175-16.

11.

Tentacle: distributed quantification of genes in metagenomes.

Boulund F, Sjögren A, Kristiansson E.

Gigascience. 2015 Sep 7;4:40. doi: 10.1186/s13742-015-0078-1. eCollection 2015.

12.

Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

Karlsson R, Gonzales-Siles L, Boulund F, Svensson-Stadler L, Skovbjerg S, Karlsson A, Davidson M, Hulth S, Kristiansson E, Moore ER.

Syst Appl Microbiol. 2015 Jun;38(4):246-57. doi: 10.1016/j.syapm.2015.03.006. Epub 2015 Apr 11. Review.

PMID:
25933927
13.

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

Bengtsson-Palme J, Boulund F, Fick J, Kristiansson E, Larsson DG.

Front Microbiol. 2014 Dec 2;5:648. doi: 10.3389/fmicb.2014.00648. eCollection 2014.

14.

In vitro assessment of platelet concentrates with multiple electrode aggregometry.

Shams Hakimi C, Hesse C, Wallén H, Boulund F, Grahn A, Jeppsson A.

Platelets. 2015;26(2):132-7. doi: 10.3109/09537104.2014.898141. Epub 2014 Jul 7.

PMID:
24999542
15.

Functional verification of computationally predicted qnr genes.

Flach CF, Boulund F, Kristiansson E, Larsson DJ.

Ann Clin Microbiol Antimicrob. 2013 Nov 21;12:34. doi: 10.1186/1476-0711-12-34.

16.

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences.

Boulund F, Johnning A, Pereira MB, Larsson DG, Kristiansson E.

BMC Genomics. 2012 Dec 11;13:695. doi: 10.1186/1471-2164-13-695.

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