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Items: 19

1.

Chronic mucocutaneous candidiasis and connective tissue disorder in humans with impaired JNK1-dependent responses to IL-17A/F and TGF-β.

Li J, Ritelli M, Ma CS, Rao G, Habib T, Corvilain E, Bougarn S, Cypowyj S, Grodecká L, Lévy R, Béziat V, Shang L, Payne K, Avery DT, Migaud M, Boucherit S, Boughorbel S, Guennoun A, Chrabieh M, Rapaport F, Bigio B, Itan Y, Boisson B, Cormier-Daire V, Syx D, Malfait F, Zoppi N, Abel L, Freiberger T, Dietz HC, Marr N, Tangye SG, Colombi M, Casanova JL, Puel A.

Sci Immunol. 2019 Nov 29;4(41). pii: eaax7965. doi: 10.1126/sciimmunol.aax7965.

PMID:
31784499
2.

Interpreting patient-Specific risk prediction using contextual decomposition of BiLSTMs: application to children with asthma.

AlSaad R, Malluhi Q, Janahi I, Boughorbel S.

BMC Med Inform Decis Mak. 2019 Nov 8;19(1):214. doi: 10.1186/s12911-019-0951-4.

3.

Long-Chain Acyl-CoA Synthetase 1 Role in Sepsis and Immunity: Perspectives From a Parallel Review of Public Transcriptome Datasets and of the Literature.

Roelands J, Garand M, Hinchcliff E, Ma Y, Shah P, Toufiq M, Alfaki M, Hendrickx W, Boughorbel S, Rinchai D, Jazaeri A, Bedognetti D, Chaussabel D.

Front Immunol. 2019 Oct 18;10:2410. doi: 10.3389/fimmu.2019.02410. eCollection 2019. Review.

4.

A curated transcriptome dataset collection to investigate inborn errors of immunity.

Bougarn S, Boughorbel S, Chaussabel D, Marr N.

Version 2. F1000Res. 2019 Feb 15 [revised 2019 Jan 1];8:188. doi: 10.12688/f1000research.18048.2. eCollection 2019.

5.

A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases.

Huang SSY, Al Ali F, Boughorbel S, Toufiq M, Chaussabel D, Garand M.

Database (Oxford). 2019 Jan 1;2019. pii: baz066. doi: 10.1093/database/baz066.

6.

A curated transcriptome dataset collection to investigate the blood transcriptional response to viral respiratory tract infection and vaccination.

Bougarn S, Boughorbel S, Chaussabel D, Marr N.

F1000Res. 2019 Mar 13;8:284. doi: 10.12688/f1000research.18533.1. eCollection 2019.

7.
8.

IRF4 haploinsufficiency in a family with Whipple's disease.

Guérin A, Kerner G, Marr N, Markle JG, Fenollar F, Wong N, Boughorbel S, Avery DT, Ma CS, Bougarn S, Bouaziz M, Béziat V, Della Mina E, Oleaga-Quintas C, Lazarov T, Worley L, Nguyen T, Patin E, Deswarte C, Martinez-Barricarte R, Boucherit S, Ayral X, Edouard S, Boisson-Dupuis S, Rattina V, Bigio B, Vogt G, Geissmann F, Quintana-Murci L, Chaussabel D, Tangye SG, Raoult D, Abel L, Bustamante J, Casanova JL.

Elife. 2018 Mar 14;7. pii: e32340. doi: 10.7554/eLife.32340.

9.

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification.

Roelands J, Decock J, Boughorbel S, Rinchai D, Maccalli C, Ceccarelli M, Black M, Print C, Chou J, Presnell S, Quinn C, Jithesh P, Syed N, Al Bader SBJ, Bedri S, Wang E, Marincola FM, Chaussabel D, Kuppen P, Miller LD, Bedognetti D, Hendrickx W.

Version 2. F1000Res. 2017 Mar 20 [revised 2018 Jan 1];6:296. doi: 10.12688/f1000research.10960.2. eCollection 2017.

10.

The role of alternative Polyadenylation in regulation of rhythmic gene expression.

Ptitsyna N, Boughorbel S, El Anbari M, Ptitsyn A.

BMC Genomics. 2017 Aug 4;18(1):576. doi: 10.1186/s12864-017-3958-1.

11.

Optimal classifier for imbalanced data using Matthews Correlation Coefficient metric.

Boughorbel S, Jarray F, El-Anbari M.

PLoS One. 2017 Jun 2;12(6):e0177678. doi: 10.1371/journal.pone.0177678. eCollection 2017.

12.
13.

Inherited human IRAK-1 deficiency selectively impairs TLR signaling in fibroblasts.

Della Mina E, Borghesi A, Zhou H, Bougarn S, Boughorbel S, Israel L, Meloni I, Chrabieh M, Ling Y, Itan Y, Renieri A, Mazzucchelli I, Basso S, Pavone P, Falsaperla R, Ciccone R, Cerbo RM, Stronati M, Picard C, Zuffardi O, Abel L, Chaussabel D, Marr N, Li X, Casanova JL, Puel A.

Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):E514-E523. doi: 10.1073/pnas.1620139114. Epub 2017 Jan 9.

14.

A curated transcriptome dataset collection to investigate the functional programming of human hematopoietic cells in early life.

Rahman M, Boughorbel S, Presnell S, Quinn C, Cugno C, Chaussabel D, Marr N.

F1000Res. 2016 Mar 30;5:414. doi: 10.12688/f1000research.8375.1. eCollection 2016.

15.

A curated transcriptome dataset collection to investigate the development and differentiation of the human placenta and its associated pathologies.

Marr AK, Boughorbel S, Presnell S, Quinn C, Chaussabel D, Kino T.

Version 2. F1000Res. 2016 Mar 9 [revised 2016 Jan 1];5:305. doi: 10.12688/f1000research.8210.2. eCollection 2016.

16.

A curated compendium of monocyte transcriptome datasets of relevance to human monocyte immunobiology research.

Rinchai D, Boughorbel S, Presnell S, Quinn C, Chaussabel D.

F1000Res. 2016 Apr 25;5:291. doi: 10.12688/f1000research.8182.2. eCollection 2016.

17.

A compendium of monocyte transcriptome datasets to foster biomedical knowledge discovery.

Rinchai D, Boughorbel S, Presnell S, Quinn C, Chaussabel D.

F1000Res. 2016 Mar 7;5:291. doi: 10.12688/f1000research.8182.1. eCollection 2016.

18.

A curated transcriptome dataset collection to investigate the immunobiology of HIV infection.

Blazkova J, Boughorbel S, Presnell S, Quinn C, Chaussabel D.

F1000Res. 2016 Mar 11;5:327. doi: 10.12688/f1000research.8204.1. eCollection 2016.

19.

Model Comparison for Breast Cancer Prognosis Based on Clinical Data.

Boughorbel S, Al-Ali R, Elkum N.

PLoS One. 2016 Jan 15;11(1):e0146413. doi: 10.1371/journal.pone.0146413. eCollection 2016.

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