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Items: 16

1.

Model selection and parameter inference in phylogenetics using Nested Sampling.

Maturana R P, Brewer BJ, Klaere S, Bouckaert RR.

Syst Biol. 2018 Jun 29. doi: 10.1093/sysbio/syy050. [Epub ahead of print]

PMID:
29961836
2.

Phylodynamic model adequacy using posterior predictive simulations.

Duchene S, Bouckaert R, Duchene DA, Stadler T, Drummond AJ.

Syst Biol. 2018 Jun 25. doi: 10.1093/sysbio/syy048. [Epub ahead of print]

PMID:
29945220
3.

A Bayesian phylogenetic study of the Dravidian language family.

Kolipakam V, Jordan FM, Dunn M, Greenhill SJ, Bouckaert R, Gray RD, Verkerk A.

R Soc Open Sci. 2018 Mar 21;5(3):171504. doi: 10.1098/rsos.171504. eCollection 2018 Mar.

4.

The origin and expansion of Pama-Nyungan languages across Australia.

Bouckaert RR, Bowern C, Atkinson QD.

Nat Ecol Evol. 2018 Apr;2(4):741-749. doi: 10.1038/s41559-018-0489-3. Epub 2018 Mar 12.

PMID:
29531347
5.

Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling.

Bouckaert R, Simons BC, Krarup H, Friesen TM, Osiowy C.

PeerJ. 2017 Aug 31;5:e3757. doi: 10.7717/peerj.3757. eCollection 2017.

6.

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates.

Ogilvie HA, Bouckaert RR, Drummond AJ.

Mol Biol Evol. 2017 Aug 1;34(8):2101-2114. doi: 10.1093/molbev/msx126.

7.

Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes.

Matschiner M, Musilová Z, Barth JM, Starostová Z, Salzburger W, Steel M, Bouckaert R.

Syst Biol. 2017 Jan 1;66(1):3-22. doi: 10.1093/sysbio/syw076.

PMID:
28173588
8.

bModelTest: Bayesian phylogenetic site model averaging and model comparison.

Bouckaert RR, Drummond AJ.

BMC Evol Biol. 2017 Feb 6;17(1):42. doi: 10.1186/s12862-017-0890-6.

9.

Phylogeography by diffusion on a sphere: whole world phylogeography.

Bouckaert R.

PeerJ. 2016 Sep 6;4:e2406. doi: 10.7717/peerj.2406. eCollection 2016.

10.

BEAST 2: a software platform for Bayesian evolutionary analysis.

Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ.

PLoS Comput Biol. 2014 Apr 10;10(4):e1003537. doi: 10.1371/journal.pcbi.1003537. eCollection 2014 Apr.

11.

Species delimitation using genome-wide SNP data.

Leaché AD, Fujita MK, Minin VN, Bouckaert RR.

Syst Biol. 2014 Jul;63(4):534-42. doi: 10.1093/sysbio/syu018. Epub 2014 Mar 12.

12.

Looking for trees in the forest: summary tree from posterior samples.

Heled J, Bouckaert RR.

BMC Evol Biol. 2013 Oct 4;13:221. doi: 10.1186/1471-2148-13-221.

13.

Evolutionary rates and HBV: issues of rate estimation with Bayesian molecular methods.

Bouckaert R, Alvarado-Mora MV, Pinho JR.

Antivir Ther. 2013;18(3 Pt B):497-503. doi: 10.3851/IMP2656. Epub 2013 Jun 21.

PMID:
23792904
14.

Mapping the origins and expansion of the Indo-European language family.

Bouckaert R, Lemey P, Dunn M, Greenhill SJ, Alekseyenko AV, Drummond AJ, Gray RD, Suchard MA, Atkinson QD.

Science. 2012 Aug 24;337(6097):957-60. doi: 10.1126/science.1219669. Erratum in: Science. 2013 Dec 20;342(6165):1446.

15.

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.

Bryant D, Bouckaert R, Felsenstein J, Rosenberg NA, RoyChoudhury A.

Mol Biol Evol. 2012 Aug;29(8):1917-32. doi: 10.1093/molbev/mss086. Epub 2012 Mar 14.

16.

DensiTree: making sense of sets of phylogenetic trees.

Bouckaert RR.

Bioinformatics. 2010 May 15;26(10):1372-3. doi: 10.1093/bioinformatics/btq110. Epub 2010 Mar 12.

PMID:
20228129

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