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A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species.

Combier M, Evangelisti E, Piron MC, Rengel D, Legrand L, Shenhav L, Bouchez O, Schornack S, Mestre P.

PLoS One. 2019 Jul 29;14(7):e0220184. doi: 10.1371/journal.pone.0220184. eCollection 2019.


Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata.

Le Cam B, Sargent D, Gouzy J, Amselem J, Bellanger MN, Bouchez O, Brown S, Caffier V, De Gracia M, Debuchy R, Duvaux L, Payen T, Sannier M, Shiller J, Collemare J, Lemaire C.

G3 (Bethesda). 2019 Aug 8;9(8):2405-2414. doi: 10.1534/g3.119.400047.


Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits.

Read T, Fortun-Lamothe L, Pascal G, Le Boulch M, Cauquil L, Gabinaud B, Bannelier C, Balmisse E, Destombes N, Bouchez O, Gidenne T, Combes S.

Front Microbiol. 2019 May 10;10:973. doi: 10.3389/fmicb.2019.00973. eCollection 2019.


Differences in resource use lead to coexistence of seed-transmitted microbial populations.

Torres-Cortés G, Garcia BJ, Compant S, Rezki S, Jones P, Préveaux A, Briand M, Roulet A, Bouchez O, Jacobson D, Barret M.

Sci Rep. 2019 Apr 30;9(1):6648. doi: 10.1038/s41598-019-42865-9.


Modeling Protein Destiny in Developing Fruit.

Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S.

Plant Physiol. 2019 Jul;180(3):1709-1724. doi: 10.1104/pp.19.00086. Epub 2019 Apr 23.


A High-Quality Grapevine Downy Mildew Genome Assembly Reveals Rapidly Evolving and Lineage-Specific Putative Host Adaptation Genes.

Dussert Y, Mazet ID, Couture C, Gouzy J, Piron MC, Kuchly C, Bouchez O, Rispe C, Mestre P, Delmotte F.

Genome Biol Evol. 2019 Mar 1;11(3):954-969. doi: 10.1093/gbe/evz048.


Genetic architecture of a plant adaptive trait: QTL mapping of intraspecific variation for tolerance to metal pollution in Arabidopsis halleri.

Karam MJ, Souleman D, Schvartzman MS, Gallina S, Spielmann J, Poncet C, Bouchez O, Pauwels M, Hanikenne M, Frérot H.

Heredity (Edinb). 2019 Jun;122(6):877-892. doi: 10.1038/s41437-019-0184-4. Epub 2019 Jan 22.


RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed.

Hérault F, Houée-Bigot M, Baéza E, Bouchez O, Esquerré D, Klopp C, Diot C.

BMC Genomics. 2019 Jan 7;20(1):13. doi: 10.1186/s12864-018-5415-1.


FASTBAC-Seq: Functional Analysis of Toxin-Antitoxin Systems in Bacteria by Deep Sequencing.

Masachis S, Tourasse NJ, Chabas S, Bouchez O, Darfeuille F.

Methods Enzymol. 2018;612:67-100. doi: 10.1016/bs.mie.2018.08.033. Epub 2018 Sep 25.


Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii.

Pecrix Y, Buendia L, Penouilh-Suzette C, Maréchaux M, Legrand L, Bouchez O, Rengel D, Gouzy J, Cottret L, Vear F, Godiard L.

Plant J. 2019 Feb;97(4):730-748. doi: 10.1111/tpj.14157. Epub 2019 Jan 7.


Whole-genome landscape of Medicago truncatula symbiotic genes.

Pecrix Y, Staton SE, Sallet E, Lelandais-Brière C, Moreau S, Carrère S, Blein T, Jardinaud MF, Latrasse D, Zouine M, Zahm M, Kreplak J, Mayjonade B, Satgé C, Perez M, Cauet S, Marande W, Chantry-Darmon C, Lopez-Roques C, Bouchez O, Bérard A, Debellé F, Muños S, Bendahmane A, Bergès H, Niebel A, Buitink J, Frugier F, Benhamed M, Crespi M, Gouzy J, Gamas P.

Nat Plants. 2018 Dec;4(12):1017-1025. doi: 10.1038/s41477-018-0286-7. Epub 2018 Nov 5.


The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon.

Zarrillo S, Gaikwad N, Lanaud C, Powis T, Viot C, Lesur I, Fouet O, Argout X, Guichoux E, Salin F, Solorzano RL, Bouchez O, Vignes H, Severts P, Hurtado J, Yepez A, Grivetti L, Blake M, Valdez F.

Nat Ecol Evol. 2018 Dec;2(12):1879-1888. doi: 10.1038/s41559-018-0697-x. Epub 2018 Oct 29.


Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents.

Segura A, Bertoni M, Auffret P, Klopp C, Bouchez O, Genthon C, Durand A, Bertin Y, Forano E.

BMC Genomics. 2018 Oct 23;19(1):766. doi: 10.1186/s12864-018-5167-y.


One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070.

Illikoud N, Klopp C, Roulet A, Bouchez O, Marsaud N, Jaffrès E, Zagorec M.

Stand Genomic Sci. 2018 Oct 10;13:22. doi: 10.1186/s40793-018-0333-z. eCollection 2018.


The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines.

Payelleville A, Legrand L, Ogier JC, Roques C, Roulet A, Bouchez O, Mouammine A, Givaudan A, Brillard J.

Sci Rep. 2018 Aug 14;8(1):12091. doi: 10.1038/s41598-018-30620-5.


Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants.

Rousseau E, Tamisier L, Fabre F, Simon V, Szadkowski M, Bouchez O, Zanchetta C, Girardot G, Mailleret L, Grognard F, Palloix A, Moury B.

Mol Plant Pathol. 2018 Dec;19(12):2575-2589. doi: 10.1111/mpp.12730. Epub 2018 Oct 25.


A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale.

Frachon L, Bartoli C, Carrère S, Bouchez O, Chaubet A, Gautier M, Roby D, Roux F.

Front Plant Sci. 2018 Jul 10;9:967. doi: 10.3389/fpls.2018.00967. eCollection 2018.


Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence.

Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques MA, Barret M.

Front Plant Sci. 2018 Jun 29;9:902. doi: 10.3389/fpls.2018.00902. eCollection 2018.


Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways.

Duron O, Morel O, Noël V, Buysse M, Binetruy F, Lancelot R, Loire E, Ménard C, Bouchez O, Vavre F, Vial L.

Curr Biol. 2018 Jun 18;28(12):1896-1902.e5. doi: 10.1016/j.cub.2018.04.038. Epub 2018 May 31.


In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana.

Bartoli C, Frachon L, Barret M, Rigal M, Huard-Chauveau C, Mayjonade B, Zanchetta C, Bouchez O, Roby D, Carrère S, Roux F.

ISME J. 2018 Aug;12(8):2024-2038. doi: 10.1038/s41396-018-0152-7. Epub 2018 May 30.


Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation.

Gaulin E, Pel MJC, Camborde L, San-Clemente H, Courbier S, Dupouy MA, Lengellé J, Veyssiere M, Le Ru A, Grandjean F, Cordaux R, Moumen B, Gilbert C, Cano LM, Aury JM, Guy J, Wincker P, Bouchez O, Klopp C, Dumas B.

BMC Biol. 2018 Apr 18;16(1):43. doi: 10.1186/s12915-018-0508-5.


Placental function and structure at term is altered in broodmares fed with cereals from mid-gestation.

Robles M, Peugnet P, Dubois C, Piumi F, Jouneau L, Bouchez O, Aubrière MC, Dahirel M, Aioun J, Wimel L, Couturier-Tarrade A, Chavatte-Palmer P.

Placenta. 2018 Apr;64:44-52. doi: 10.1016/j.placenta.2018.02.003. Epub 2018 Mar 3.


Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae).

Gschloessl B, Dorkeld F, Berges H, Beydon G, Bouchez O, Branco M, Bretaudeau A, Burban C, Dubois E, Gauthier P, Lhuillier E, Nichols J, Nidelet S, Rocha S, Sauné L, Streiff R, Gautier M, Kerdelhué C.

Mol Ecol Resour. 2018 May;18(3):602-619. doi: 10.1111/1755-0998.12756. Epub 2018 Feb 12.


Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2018 Jan;2(1):194. doi: 10.1038/s41559-017-0405-2.


Autosomal and Mitochondrial Adaptation Following Admixture: A Case Study on the Honeybees of Reunion Island.

Wragg D, Techer MA, Canale-Tabet K, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Clémencet J, Delatte H, Vignal A.

Genome Biol Evol. 2018 Jan 1;10(1):220-238. doi: 10.1093/gbe/evx247.


Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2017 Oct;1(10):1551-1561. doi: 10.1038/s41559-017-0297-1. Epub 2017 Sep 4. Erratum in: Nat Ecol Evol. 2017 Dec 5;:.


Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae).

Van de Paer C, Bouchez O, Besnard G.

Mol Ecol Resour. 2018 May;18(3):407-423. doi: 10.1111/1755-0998.12742. Epub 2017 Dec 15.


Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France.

Auffret P, Segura A, Bertin Y, Klopp C, Bouchez O, Kérourédan M, Bibbal D, Brugère H, Forano E.

Genome Announc. 2017 Oct 5;5(40). pii: e01097-17. doi: 10.1128/genomeA.01097-17.


Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Eoche-Bosy D, Gautier M, Esquibet M, Legeai F, Bretaudeau A, Bouchez O, Fournet S, Grenier E, Montarry J.

Mol Ecol. 2017 Sep;26(18):4700-4711. doi: 10.1111/mec.14240. Epub 2017 Aug 14.


Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach.

Fariello MI, Boitard S, Mercier S, Robelin D, Faraut T, Arnould C, Recoquillay J, Bouchez O, Salin G, Dehais P, Gourichon D, Leroux S, Pitel F, Leterrier C, SanCristobal M.

Mol Ecol. 2017 Jul;26(14):3700-3714. doi: 10.1111/mec.14141. Epub 2017 May 21.


A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird.

Bourgeois YX, Delahaie B, Gautier M, Lhuillier E, Malé PG, Bertrand JA, Cornuault J, Wakamatsu K, Bouchez O, Mould C, Bruxaux J, Holota H, Milá B, Thébaud C.

R Soc Open Sci. 2017 Feb 15;4(2):160805. doi: 10.1098/rsos.160805. eCollection 2017 Feb.


Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep.

Demars J, Cano M, Drouilhet L, Plisson-Petit F, Bardou P, Fabre S, Servin B, Sarry J, Woloszyn F, Mulsant P, Foulquier D, Carrière F, Aletru M, Rodde N, Cauet S, Bouchez O, Pirson M, Tosser-Klopp G, Allain D.

Mol Biol Evol. 2017 Jul 1;34(7):1722-1729. doi: 10.1093/molbev/msx114.


Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain.

Goñi Urriza M, Gassie C, Bouchez O, Klopp C, Guyoneaud R.

Genome Announc. 2017 Jan 19;5(3). pii: e01483-16. doi: 10.1128/genomeA.01483-16.


Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime.

Marchetti M, Clerissi C, Yousfi Y, Gris C, Bouchez O, Rocha E, Cruveiller S, Jauneau A, Capela D, Masson-Boivin C.

Mol Ecol. 2017 Apr;26(7):1818-1831. doi: 10.1111/mec.13895. Epub 2016 Nov 12.


Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits.

Combes S, Massip K, Martin O, Furbeyre H, Cauquil L, Pascal G, Bouchez O, Le Floc'h N, Zemb O, Oswald IP, Gidenne T.

Animal. 2017 May;11(5):854-863. doi: 10.1017/S1751731116002007. Epub 2016 Oct 17.


Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum.

Le Gac M, Metegnier G, Chomérat N, Malestroit P, Quéré J, Bouchez O, Siano R, Destombe C, Guillou L, Chapelle A.

Mol Ecol. 2016 Oct;25(20):5129-5143. doi: 10.1111/mec.13815. Epub 2016 Sep 12.


The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats.

Aubé J, Senin P, Pringault O, Bonin P, Deflandre B, Bouchez O, Bru N, Biritxinaga-Etchart E, Klopp C, Guyoneaud R, Goñi-Urriza M.

Mar Pollut Bull. 2016 Oct 15;111(1-2):115-125. doi: 10.1016/j.marpolbul.2016.07.023. Epub 2016 Jul 20.


The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling.

Balagué C, Gouget A, Bouchez O, Souriac C, Haget N, Boutet-Mercey S, Govers F, Roby D, Canut H.

Mol Plant Pathol. 2017 Sep;18(7):937-948. doi: 10.1111/mpp.12457. Epub 2016 Sep 15.


Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly.

Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A.

Sci Rep. 2016 Jun 3;6:27168. doi: 10.1038/srep27168.


Correction: Design and Characterization of a 52K SNP Chip for Goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Wang J, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2016 Mar 24;11(3):e0152632. doi: 10.1371/journal.pone.0152632. eCollection 2016. No abstract available.


SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population.

Boutet G, Alves Carvalho S, Falque M, Peterlongo P, Lhuillier E, Bouchez O, Lavaud C, Pilet-Nayel ML, Rivière N, Baranger A.

BMC Genomics. 2016 Feb 18;17:121. doi: 10.1186/s12864-016-2447-2.


Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches.

Koechler S, Bertin PN, Plewniak F, Baltenweck R, Casiot C, Heipieper HJ, Bouchez O, Arsène-Ploetze F, Hugueney P, Halter D.

Environ Microbiol. 2016 Apr;18(4):1289-300. doi: 10.1111/1462-2920.13227. Epub 2016 Feb 15.


A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.

St John EP, Simen BB, Turenchalk GS, Braverman MS, Abbate I, Aerssens J, Bouchez O, Gabriel C, Izopet J, Meixenberger K, Di Giallonardo F, Schlapbach R, Paredes R, Sakwa J, Schmitz-Agheguian GG, Thielen A, Victor M, Metzner KJ, Däumer MP; 454 HIV-1 Alpha Study Group.

PLoS One. 2016 Jan 12;11(1):e0146687. doi: 10.1371/journal.pone.0146687. eCollection 2016.


A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model.

Rupp R, Senin P, Sarry J, Allain C, Tasca C, Ligat L, Portes D, Woloszyn F, Bouchez O, Tabouret G, Lebastard M, Caubet C, Foucras G, Tosser-Klopp G.

PLoS Genet. 2015 Dec 11;11(12):e1005629. doi: 10.1371/journal.pgen.1005629. eCollection 2015 Dec.


The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline.

Lluch J, Servant F, Païssé S, Valle C, Valière S, Kuchly C, Vilchez G, Donnadieu C, Courtney M, Burcelin R, Amar J, Bouchez O, Lelouvier B.

PLoS One. 2015 Nov 6;10(11):e0142334. doi: 10.1371/journal.pone.0142334. eCollection 2015.


Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines.

Campbell-Sills H, El Khoury M, Favier M, Romano A, Biasioli F, Spano G, Sherman DJ, Bouchez O, Coton E, Coton M, Okada S, Tanaka N, Dols-Lafargue M, Lucas PM.

Genome Biol Evol. 2015 May 14;7(6):1506-18. doi: 10.1093/gbe/evv084.


Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat.

Pringault O, Aube J, Bouchez O, Klopp C, Mariette J, Escudie F, Senin P, Goni-Urriza M.

Chemosphere. 2015 Sep;135:189-201. doi: 10.1016/j.chemosphere.2015.04.037. Epub 2015 May 15.


Genomic resources notes accepted 1 December 2014 - 31 January 2015.

Genomic Resources Development Consortium, Blanchet S, Bouchez O, Chapman CA, Etter PD, Goldberg TL, Johnson EA, Jones JH, Loot G, Omeja PA, Rey O, Ruiz-Lopez MJ, Switzer WM, Ting N.

Mol Ecol Resour. 2015 May;15(3):684. doi: 10.1111/1755-0998.12388.


A medium density genetic map and QTL for behavioral and production traits in Japanese quail.

Recoquillay J, Pitel F, Arnould C, Leroux S, Dehais P, Moréno C, Calandreau L, Bertin A, Gourichon D, Bouchez O, Vignal A, Fariello MI, Minvielle F, Beaumont C, Leterrier C, Le Bihan-Duval E.

BMC Genomics. 2015 Jan 22;16:10. doi: 10.1186/s12864-014-1210-9.


Emergence shapes the structure of the seed microbiota.

Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacquesa MA.

Appl Environ Microbiol. 2015 Feb;81(4):1257-66.

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