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Items: 9

1.

Spatial genome exploration in the context of cognitive and neurological disease.

Rajarajan P, Borrman T, Liao W, Espeso-Gil S, Chandrasekaran S, Jiang Y, Weng Z, Brennand KJ, Akbarian S.

Curr Opin Neurobiol. 2019 Jun 27;59:112-119. doi: 10.1016/j.conb.2019.05.007. [Epub ahead of print] Review.

PMID:
31255842
2.

Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk.

Rajarajan P, Borrman T, Liao W, Schrode N, Flaherty E, Casiño C, Powell S, Yashaswini C, LaMarca EA, Kassim B, Javidfar B, Espeso-Gil S, Li A, Won H, Geschwind DH, Ho SM, MacDonald M, Hoffman GE, Roussos P, Zhang B, Hahn CG, Weng Z, Brennand KJ, Akbarian S.

Science. 2018 Dec 14;362(6420). pii: eaat4311. doi: 10.1126/science.aat4311.

3.

Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes.

Singh NK, Riley TP, Baker SCB, Borrman T, Weng Z, Baker BM.

J Immunol. 2017 Oct 1;199(7):2203-2213. doi: 10.4049/jimmunol.1700744. Review.

4.

ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes.

Borrman T, Cimons J, Cosiano M, Purcaro M, Pierce BG, Baker BM, Weng Z.

Proteins. 2017 May;85(5):908-916. doi: 10.1002/prot.25260. Epub 2017 Feb 16.

5.

Corrigendum: Replication timing is regulated by the number of MCMs loaded at origins.

Das SP, Borrman T, Liu VW, Yang SC, Bechhoefer J, Rhind N.

Genome Res. 2016 Dec;26(12):1761. No abstract available.

6.

Performance of ZDOCK and IRAD in CAPRI rounds 28-34.

Vreven T, Pierce BG, Borrman TM, Weng Z.

Proteins. 2017 Mar;85(3):408-416. doi: 10.1002/prot.25186. Epub 2016 Oct 24.

7.

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.

Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.

Proteins. 2016 Sep;84 Suppl 1:323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1.

8.

Replication timing is regulated by the number of MCMs loaded at origins.

Das SP, Borrman T, Liu VW, Yang SC, Bechhoefer J, Rhind N.

Genome Res. 2015 Dec;25(12):1886-92. doi: 10.1101/gr.195305.115. Epub 2015 Sep 10. Erratum in: Genome Res. 2016 Dec;26(12 ):1761.

9.

Identification of Copy Number Aberrations in Breast Cancer Subtypes Using Persistence Topology.

Arsuaga J, Borrman T, Cavalcante R, Gonzalez G, Park C.

Microarrays (Basel). 2015 Aug 12;4(3):339-69. doi: 10.3390/microarrays4030339.

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