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Items: 1 to 50 of 86

1.

Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis.

Payne JL, Menardo F, Trauner A, Borrell S, Gygli SM, Loiseau C, Gagneux S, Hall AR.

PLoS Biol. 2019 May 13;17(5):e3000265. doi: 10.1371/journal.pbio.3000265. eCollection 2019 May.

2.

Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania.

Rutaihwa LK, Sasamalo M, Jaleco A, Hella J, Kingazi A, Kamwela L, Kingalu A, Malewo B, Shirima R, Doetsch A, Feldmann J, Reinhard M, Borrell S, Brites D, Reither K, Doulla B, Fenner L, Gagneux S.

PLoS One. 2019 Apr 12;14(4):e0206334. doi: 10.1371/journal.pone.0206334. eCollection 2019.

3.

Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.

Borrell S, Trauner A, Brites D, Rigouts L, Loiseau C, Coscolla M, Niemann S, De Jong B, Yeboah-Manu D, Kato-Maeda M, Feldmann J, Reinhard M, Beisel C, Gagneux S.

PLoS One. 2019 Mar 25;14(3):e0214088. doi: 10.1371/journal.pone.0214088. eCollection 2019.

4.

Drug susceptibility testing and mortality in patients treated for tuberculosis in high-burden countries: a multicentre cohort study.

Zürcher K, Ballif M, Fenner L, Borrell S, Keller PM, Gnokoro J, Marcy O, Yotebieng M, Diero L, Carter EJ, Rockwood N, Wilkinson RJ, Cox H, Ezati N, Abimiku AG, Collantes J, Avihingsanon A, Kawkitinarong K, Reinhard M, Hömke R, Huebner R, Gagneux S, Böttger EC, Egger M; International epidemiology Databases to Evaluate AIDS (IeDEA) consortium.

Lancet Infect Dis. 2019 Mar;19(3):298-307. doi: 10.1016/S1473-3099(18)30673-X. Epub 2019 Feb 8.

5.

Whole-Genome Sequencing for Drug Resistance Profile Prediction in Mycobacterium tuberculosis.

Gygli SM, Keller PM, Ballif M, Blöchliger N, Hömke R, Reinhard M, Loiseau C, Ritter C, Sander P, Borrell S, Collantes Loo J, Avihingsanon A, Gnokoro J, Yotebieng M, Egger M, Gagneux S, Böttger EC.

Antimicrob Agents Chemother. 2019 Mar 27;63(4). pii: e02175-18. doi: 10.1128/AAC.02175-18. Print 2019 Apr.

6.

Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.

Seth-Smith HMB, Imkamp F, Tagini F, Cuénod A, Hömke R, Jahn K, Tschacher A, Grendelmeier P, Bättig V, Erb S, Reinhard M, Rütimann G, Borrell S, Gagneux S, Casanova C, Droz S, Osthoff M, Tamm M, Nübel U, Greub G, Keller PM, Egli A.

Front Microbiol. 2019 Jan 8;9:3184. doi: 10.3389/fmicb.2018.03184. eCollection 2018.

7.

A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex.

Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, Fyfe JA, Coscolla M, Gagneux S.

Front Microbiol. 2018 Nov 27;9:2820. doi: 10.3389/fmicb.2018.02820. eCollection 2018.

8.

Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia.

Merker M, Barbier M, Cox H, Rasigade JP, Feuerriegel S, Kohl TA, Diel R, Borrell S, Gagneux S, Nikolayevskyy V, Andres S, Nübel U, Supply P, Wirth T, Niemann S.

Elife. 2018 Oct 30;7. pii: e38200. doi: 10.7554/eLife.38200.

9.

A Co-Designed, Culturally-Tailored mHealth Tool to Support Healthy Lifestyles in Māori and Pasifika Communities in New Zealand: Protocol for a Cluster Randomized Controlled Trial.

Verbiest M, Borrell S, Dalhousie S, Tupa'i-Firestone R, Funaki T, Goodwin D, Grey J, Henry A, Hughes E, Humphrey G, Jiang Y, Jull A, Pekepo C, Schumacher J, Te Morenga L, Tunks M, Vano M, Whittaker R, Ni Mhurchu C.

JMIR Res Protoc. 2018 Aug 22;7(8):e10789. doi: 10.2196/10789.

10.

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.

Otchere ID, Coscollá M, Sánchez-Busó L, Asante-Poku A, Brites D, Loiseau C, Meehan C, Osei-Wusu S, Forson A, Laryea C, Yahayah AI, Baddoo A, Ansa GA, Aboagye SY, Asare P, Borrell S, Gehre F, Beckert P, Kohl TA, N'dira S, Beisel C, Antonio M, Niemann S, de Jong BC, Parkhill J, Harris SR, Gagneux S, Yeboah-Manu D.

Sci Rep. 2018 Jul 26;8(1):11269. doi: 10.1038/s41598-018-29620-2.

11.

Reduced transmission of Mycobacterium africanum compared to Mycobacterium tuberculosis in urban West Africa.

Asare P, Asante-Poku A, Prah DA, Borrell S, Osei-Wusu S, Otchere ID, Forson A, Adjapong G, Koram KA, Gagneux S, Yeboah-Manu D.

Int J Infect Dis. 2018 Aug;73:30-42. doi: 10.1016/j.ijid.2018.05.014. Epub 2018 Jun 4.

12.

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity.

Menardo F, Loiseau C, Brites D, Coscolla M, Gygli SM, Rutaihwa LK, Trauner A, Beisel C, Borrell S, Gagneux S.

BMC Bioinformatics. 2018 May 2;19(1):164. doi: 10.1186/s12859-018-2164-8.

13.

High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.

Zampieri M, Szappanos B, Buchieri MV, Trauner A, Piazza I, Picotti P, Gagneux S, Borrell S, Gicquel B, Lelievre J, Papp B, Sauer U.

Sci Transl Med. 2018 Feb 21;10(429). pii: eaal3973. doi: 10.1126/scitranslmed.aal3973.

14.

Strain Diversity and the Evolution of Antibiotic Resistance.

Borrell S, Trauner A.

Adv Exp Med Biol. 2017;1019:263-279. doi: 10.1007/978-3-319-64371-7_14. Review.

PMID:
29116640
15.

Molecular characterization of bovine tuberculosis strains in two slaughterhouses in Morocco.

Yahyaoui-Azami H, Aboukhassib H, Bouslikhane M, Berrada J, Rami S, Reinhard M, Gagneux S, Feldmann J, Borrell S, Zinsstag J.

BMC Vet Res. 2017 Aug 25;13(1):272. doi: 10.1186/s12917-017-1165-6.

16.

Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives.

Gygli SM, Borrell S, Trauner A, Gagneux S.

FEMS Microbiol Rev. 2017 May 1;41(3):354-373. doi: 10.1093/femsre/fux011. Review.

PMID:
28369307
17.

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

Stucki D, Brites D, Jeljeli L, Coscolla M, Liu Q, Trauner A, Fenner L, Rutaihwa L, Borrell S, Luo T, Gao Q, Kato-Maeda M, Ballif M, Egger M, Macedo R, Mardassi H, Moreno M, Tudo Vilanova G, Fyfe J, Globan M, Thomas J, Jamieson F, Guthrie JL, Asante-Poku A, Yeboah-Manu D, Wampande E, Ssengooba W, Joloba M, Henry Boom W, Basu I, Bower J, Saraiva M, Vaconcellos SEG, Suffys P, Koch A, Wilkinson R, Gail-Bekker L, Malla B, Ley SD, Beck HP, de Jong BC, Toit K, Sanchez-Padilla E, Bonnet M, Gil-Brusola A, Frank M, Penlap Beng VN, Eisenach K, Alani I, Wangui Ndung'u P, Revathi G, Gehre F, Akter S, Ntoumi F, Stewart-Isherwood L, Ntinginya NE, Rachow A, Hoelscher M, Cirillo DM, Skenders G, Hoffner S, Bakonyte D, Stakenas P, Diel R, Crudu V, Moldovan O, Al-Hajoj S, Otero L, Barletta F, Jane Carter E, Diero L, Supply P, Comas I, Niemann S, Gagneux S.

Nat Genet. 2016 Dec;48(12):1535-1543. doi: 10.1038/ng.3704. Epub 2016 Oct 31.

18.

Molecular epidemiology of Mycobacterium africanum in Ghana.

Asante-Poku A, Otchere ID, Osei-Wusu S, Sarpong E, Baddoo A, Forson A, Laryea C, Borrell S, Bonsu F, Hattendorf J, Ahorlu C, Koram KA, Gagneux S, Yeboah-Manu D.

BMC Infect Dis. 2016 Aug 9;16:385. doi: 10.1186/s12879-016-1725-6.

19.

Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country.

Stucki D, Ballif M, Egger M, Furrer H, Altpeter E, Battegay M, Droz S, Bruderer T, Coscolla M, Borrell S, Zürcher K, Janssens JP, Calmy A, Mazza Stalder J, Jaton K, Rieder HL, Pfyffer GE, Siegrist HH, Hoffmann M, Fehr J, Dolina M, Frei R, Schrenzel J, Böttger EC, Gagneux S, Fenner L.

J Clin Microbiol. 2016 Jul;54(7):1862-1870. doi: 10.1128/JCM.00126-16. Epub 2016 May 18.

20.

Acquired Resistance to Bedaquiline and Delamanid in Therapy for Tuberculosis.

Bloemberg GV, Keller PM, Stucki D, Trauner A, Borrell S, Latshang T, Coscolla M, Rothe T, Hömke R, Ritter C, Feldmann J, Schulthess B, Gagneux S, Böttger EC.

N Engl J Med. 2015 Nov 12;373(20):1986-8. doi: 10.1056/NEJMc1505196. Erratum in: N Engl J Med. 2015 Dec 17;373(25):e29. Stuckia, David [corrected to Stucki, David].

21.

Mycobacterium africanum is associated with patient ethnicity in Ghana.

Asante-Poku A, Yeboah-Manu D, Otchere ID, Aboagye SY, Stucki D, Hattendorf J, Borrell S, Feldmann J, Danso E, Gagneux S.

PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3370. doi: 10.1371/journal.pntd.0003370. eCollection 2015 Jan.

22.

Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.

Stucki D, Ballif M, Bodmer T, Coscolla M, Maurer AM, Droz S, Butz C, Borrell S, Längle C, Feldmann J, Furrer H, Mordasini C, Helbling P, Rieder HL, Egger M, Gagneux S, Fenner L.

J Infect Dis. 2015 Apr 15;211(8):1306-16. doi: 10.1093/infdis/jiu601. Epub 2014 Oct 30.

23.

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

Steiner A, Stucki D, Coscolla M, Borrell S, Gagneux S.

BMC Genomics. 2014 Oct 9;15:881. doi: 10.1186/1471-2164-15-881.

24.

Evolution of drug resistance in tuberculosis: recent progress and implications for diagnosis and therapy.

Trauner A, Borrell S, Reither K, Gagneux S.

Drugs. 2014 Jul;74(10):1063-72. doi: 10.1007/s40265-014-0248-y. Review.

25.

Evaluation of customised lineage-specific sets of MIRU-VNTR loci for genotyping Mycobacterium tuberculosis complex isolates in Ghana.

Asante-Poku A, Nyaho MS, Borrell S, Comas I, Gagneux S, Yeboah-Manu D.

PLoS One. 2014 Mar 25;9(3):e92675. doi: 10.1371/journal.pone.0092675. eCollection 2014.

26.

Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis.

Borrell S, Teo Y, Giardina F, Streicher EM, Klopper M, Feldmann J, Müller B, Victor TC, Gagneux S.

Evol Med Public Health. 2013 Jan;2013(1):65-74. doi: 10.1093/emph/eot003. Epub 2013 Mar 8.

27.

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S.

Nat Genet. 2013 Oct;45(10):1176-82. doi: 10.1038/ng.2744. Epub 2013 Sep 1.

28.

HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis.

Fenner L, Egger M, Bodmer T, Furrer H, Ballif M, Battegay M, Helbling P, Fehr J, Gsponer T, Rieder HL, Zwahlen M, Hoffmann M, Bernasconi E, Cavassini M, Calmy A, Dolina M, Frei R, Janssens JP, Borrell S, Stucki D, Schrenzel J, Böttger EC, Gagneux S; Swiss HIV Cohort and Molecular Epidemiology of Tuberculosis Study Groups.

PLoS Genet. 2013;9(3):e1003318. doi: 10.1371/journal.pgen.1003318. Epub 2013 Mar 7.

29.

First insights into the phylogenetic diversity of Mycobacterium tuberculosis in Nepal.

Malla B, Stucki D, Borrell S, Feldmann J, Maharjan B, Shrestha B, Fenner L, Gagneux S.

PLoS One. 2012;7(12):e52297. doi: 10.1371/journal.pone.0052297. Epub 2012 Dec 26.

30.

The heterogeneous evolution of multidrug-resistant Mycobacterium tuberculosis.

Müller B, Borrell S, Rose G, Gagneux S.

Trends Genet. 2013 Mar;29(3):160-9. doi: 10.1016/j.tig.2012.11.005. Epub 2012 Dec 13. Review.

31.

Putative compensatory mutations in the rpoC gene of rifampin-resistant Mycobacterium tuberculosis are associated with ongoing transmission.

de Vos M, Müller B, Borrell S, Black PA, van Helden PD, Warren RM, Gagneux S, Victor TC.

Antimicrob Agents Chemother. 2013 Feb;57(2):827-32. doi: 10.1128/AAC.01541-12. Epub 2012 Dec 3.

32.

Prevalence and risk factors for VRE colonisation in a tertiary hospital in Melbourne, Australia: a cross sectional study.

Karki S, Houston L, Land G, Bass P, Kehoe R, Borrell S, Watson K, Spelman D, Kennon J, Harrington G, Cheng AC.

Antimicrob Resist Infect Control. 2012 Oct 8;1(1):31. doi: 10.1186/2047-2994-1-31.

33.

A case of cutaneous tuberculosis in a Buruli ulcer-endemic area.

Bratschi MW, Njih Tabah E, Bolz M, Stucki D, Borrell S, Gagneux S, Noumen-Djeunga B, Junghanss T, Um Boock A, Pluschke G.

PLoS Negl Trop Dis. 2012;6(8):e1751. doi: 10.1371/journal.pntd.0001751. Epub 2012 Aug 28. No abstract available.

34.

Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea.

Ballif M, Harino P, Ley S, Coscolla M, Niemann S, Carter R, Coulter C, Borrell S, Siba P, Phuanukoonnon S, Gagneux S, Beck HP.

BMC Microbiol. 2012 Sep 4;12:191. doi: 10.1186/1471-2180-12-191.

35.

Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages.

Stucki D, Malla B, Hostettler S, Huna T, Feldmann J, Yeboah-Manu D, Borrell S, Fenner L, Comas I, Coscollà M, Gagneux S.

PLoS One. 2012;7(7):e41253. doi: 10.1371/journal.pone.0041253. Epub 2012 Jul 20.

36.

Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea.

Ballif M, Harino P, Ley S, Carter R, Coulter C, Niemann S, Borrell S, Fenner L, Siba P, Phuanukoonnon S, Gagneux S, Beck HP.

Int J Tuberc Lung Dis. 2012 Aug;16(8):1100-7. doi: 10.5588/ijtld.11.0779. Epub 2012 Jun 14.

PMID:
22710686
37.

Effect of mutation and genetic background on drug resistance in Mycobacterium tuberculosis.

Fenner L, Egger M, Bodmer T, Altpeter E, Zwahlen M, Jaton K, Pfyffer GE, Borrell S, Dubuis O, Bruderer T, Siegrist HH, Furrer H, Calmy A, Fehr J, Stalder JM, Ninet B, Böttger EC, Gagneux S; Swiss HIV Cohort Study and the Swiss Molecular Epidemiology of Tuberculosis Study Group.

Antimicrob Agents Chemother. 2012 Jun;56(6):3047-53. doi: 10.1128/AAC.06460-11. Epub 2012 Apr 2.

38.

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

Comas I, Borrell S, Roetzer A, Rose G, Malla B, Kato-Maeda M, Galagan J, Niemann S, Gagneux S.

Nat Genet. 2011 Dec 18;44(1):106-10. doi: 10.1038/ng.1038.

39.

"Pseudo-Beijing": evidence for convergent evolution in the direct repeat region of Mycobacterium tuberculosis.

Fenner L, Malla B, Ninet B, Dubuis O, Stucki D, Borrell S, Huna T, Bodmer T, Egger M, Gagneux S.

PLoS One. 2011;6(9):e24737. doi: 10.1371/journal.pone.0024737. Epub 2011 Sep 13.

40.

Impaired fitness of Mycobacterium tuberculosis resistant isolates in a cell culture model of murine macrophages.

Rey-Jurado E, Tudó G, Borrell S, Alcaide F, Coll P, Español M, Martín-Casabona N, Mick V, Montemayor M, Moure R, Salvadó M, Vicente E, González-Martín J.

J Antimicrob Chemother. 2011 Oct;66(10):2277-80. doi: 10.1093/jac/dkr288. Epub 2011 Jul 25.

PMID:
21791442
41.

Strain diversity, epistasis and the evolution of drug resistance in Mycobacterium tuberculosis.

Borrell S, Gagneux S.

Clin Microbiol Infect. 2011 Jun;17(6):815-20. doi: 10.1111/j.1469-0691.2011.03556.x. Review.

42.

IS6110-based global phylogeny of Mycobacterium tuberculosis.

Thorne N, Borrell S, Evans J, Magee J, García de Viedma D, Bishop C, Gonzalez-Martin J, Gharbia S, Arnold C.

Infect Genet Evol. 2011 Jan;11(1):132-8. doi: 10.1016/j.meegid.2010.09.011. Epub 2010 Dec 4.

PMID:
20920607
43.

Characterization of mutations in streptomycin-resistant Mycobacterium tuberculosis clinical isolates in the area of Barcelona.

Tudó G, Rey E, Borrell S, Alcaide F, Codina G, Coll P, Martín-Casabona N, Montemayor M, Moure R, Orcau A, Salvadó M, Vicente E, González-Martín J.

J Antimicrob Chemother. 2010 Nov;65(11):2341-6. doi: 10.1093/jac/dkq322. Epub 2010 Aug 28.

PMID:
20802233
44.

Infectiousness, reproductive fitness and evolution of drug-resistant Mycobacterium tuberculosis.

Borrell S, Gagneux S.

Int J Tuberc Lung Dis. 2009 Dec;13(12):1456-66. Review.

PMID:
19919762
45.

Tuberculosis transmission patterns among Spanish-born and foreign-born populations in the city of Barcelona.

Borrell S, Español M, Orcau A, Tudó G, March F, Caylà JA, Jansà JM, Alcaide F, Martín-Casabona N, Salvadó M, Martinez JA, Vidal R, Sanchez F, Altet N, Rey E, Coll P, González-Martín J.

Clin Microbiol Infect. 2010 Jun;16(6):568-74. doi: 10.1111/j.1469-0691.2009.02886.x. Epub 2009 Aug 4.

46.

Comparison of four-colour IS6110-fAFLP with the classic IS6110-RFLP on the ability to detect recent transmission in the city of Barcelona, Spain.

Borrell S, Thorne N, Español M, Mortimer C, Orcau A, Coll P, Gharbia S, González-Martín J, Arnold C.

Tuberculosis (Edinb). 2009 May;89(3):233-7. doi: 10.1016/j.tube.2009.03.003. Epub 2009 May 1.

PMID:
19409847
47.

Factors associated with differences between conventional contact tracing and molecular epidemiology in study of tuberculosis transmission and analysis in the city of Barcelona, Spain.

Borrell S, Español M, Orcau A, Tudó G, March F, Caylà JA, Jansà JM, Alcaide F, Martín-Casabona N, Salvadó M, Martínez JA, Vidal R, Sánchez F, Altet N, Coll P, González-Martín J.

J Clin Microbiol. 2009 Jan;47(1):198-204. doi: 10.1128/JCM.00507-08. Epub 2008 Nov 19.

48.

A proposal for applying molecular markers as an aid to identifying potential cases of imported tuberculosis in immigrants.

Alonso M, Borrell S, Lirola MM; TB Molecular Epidemiology Study Group of Madrid; Mycobacterium Study Group of Barcelona; INDAL-TB group, Bouza E, García de Viedma D.

Tuberculosis (Edinb). 2008 Nov;88(6):641-7. doi: 10.1016/j.tube.2008.04.001. Epub 2008 Jun 5.

PMID:
18538634
49.

Reduction in hospitalwide incidence of infection or colonization with methicillin-resistant Staphylococcus aureus with use of antimicrobial hand-hygiene gel and statistical process control charts.

Harrington G, Watson K, Bailey M, Land G, Borrell S, Houston L, Kehoe R, Bass P, Cockroft E, Marshall C, Mijch A, Spelman D.

Infect Control Hosp Epidemiol. 2007 Jul;28(7):837-44. Epub 2007 May 31.

PMID:
17564987
50.

Multicenter laboratory evaluation of the MB/BacT Mycobacterium detection system and the BACTEC MGIT 960 system in comparison with the BACTEC 460TB system for susceptibility testing of Mycobacterium tuberculosis.

Garrigó M, Aragón LM, Alcaide F, Borrell S, Cardeñosa E, Galán JJ, Gonzalez-Martín J, Martin-Casabona N, Moreno C, Salvado M, Coll P.

J Clin Microbiol. 2007 Jun;45(6):1766-70. Epub 2007 Apr 18.

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