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Disentangling outbreaks using whole-genome sequencing: concurrent multistate-outbreaks of Salmonella Kottbus in Germany, 2017.

Enkelmann J, von Laer A, Simon S, Fruth A, Lachmann R, Michaelis K, Borowiak M, Gillesberg Lassen S, Frank C.

Epidemiol Infect. 2020 Feb 13:1-17. doi: 10.1017/S0950268820000394. [Epub ahead of print] No abstract available.


Two drugs converged in a pancreatic β cell.

Scavuzzo MA, Borowiak M.

Sci Transl Med. 2020 Feb 12;12(530). pii: eaba7359. doi: 10.1126/scitranslmed.aba7359. Review.


Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data.

Uelze L, Borowiak M, Deneke C, Szabó I, Fischer J, Tausch SH, Malorny B.

Appl Environ Microbiol. 2020 Feb 18;86(5). pii: e02265-19. doi: 10.1128/AEM.02265-19. Print 2020 Feb 18.


A Critical Insulin TCR Contact Residue Selects High Affinity and Pathogenic Insulin Specific T Cells.

Bettini M, Scavuzzo MA, Liu B, Kolawole E, Guo L, Evavold BD, Borowiak M, Bettini ML.

Diabetes. 2019 Dec 13. pii: db190821. doi: 10.2337/db19-0821. [Epub ahead of print]


First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep.

Uelze L, Borowiak M, Deneke C, Jacobs C, Szabó I, Tausch SH, Malorny B.

Gut Pathog. 2019 Oct 14;11:48. doi: 10.1186/s13099-019-0330-9. eCollection 2019.


Salmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017.

Meinen A, Simon S, Banerji S, Szabo I, Malorny B, Borowiak M, Hadziabdic S, Becker N, Luber P, Lohr D, Harms C, Plenge-Bönig A, Mellou K, Mandilara G, Mossong J, Ragimbeau C, Weicherding P, Hau P, Dědičová D, Šafaříková L, Nair S, Dallman TJ, Larkin L, McCormick J, De Pinna E, Severi E, Kotila S, Niskanen T, Rizzi V, Deserio D, Flieger A, Stark K.

Euro Surveill. 2019 Sep;24(36). doi: 10.2807/1560-7917.ES.2019.24.36.1800543.


Detection of VIM-1-Producing Enterobacter cloacae and Salmonella enterica Serovars Infantis and Goldcoast at a Breeding Pig Farm in Germany in 2017 and Their Molecular Relationship to Former VIM-1-Producing S. Infantis Isolates in German Livestock Production.

Roschanski N, Hadziabdic S, Borowiak M, Malorny B, Tenhagen BA, Projahn M, Kaesbohrer A, Guenther S, Szabo I, Roesler U, Fischer J.

mSphere. 2019 Jun 12;4(3). pii: e00089-19. doi: 10.1128/mSphere.00089-19.


The bla NDM-1-Carrying IncA/C2 Plasmid Underlies Structural Alterations and Cointegrate Formation In Vivo.

Hadziabdic S, Fischer J, Borowiak M, Malorny B, Juraschek K, Kaesbohrer A, Guerra B, Deneke C, Gonzalez-Zorn B, Szabo I.

Antimicrob Agents Chemother. 2019 Jul 25;63(8). pii: e00380-19. doi: 10.1128/AAC.00380-19. Print 2019 Aug.


Characterization of mcr-5-Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany.

Borowiak M, Hammerl JA, Deneke C, Fischer J, Szabo I, Malorny B.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00063-19. doi: 10.1128/AAC.00063-19. Print 2019 Jun.


Pancreatic Cell Fate Determination Relies on Notch Ligand Trafficking by NFIA.

Scavuzzo MA, Chmielowiec J, Yang D, Wamble K, Chaboub LS, Duraine L, Tepe B, Glasgow SM, Arenkiel BR, Brou C, Deneen B, Borowiak M.

Cell Rep. 2018 Dec 26;25(13):3811-3827.e7. doi: 10.1016/j.celrep.2018.11.078.


SeQuiLa: an elastic, fast and scalable SQL-oriented solution for processing and querying genomic intervals.

Wiewiórka M, Leśniewska A, Szmurło A, Stępień K, Borowiak M, Okoniewski M, Gambin T.

Bioinformatics. 2019 Jun 1;35(12):2156-2158. doi: 10.1093/bioinformatics/bty940.


Endocrine lineage biases arise in temporally distinct endocrine progenitors during pancreatic morphogenesis.

Scavuzzo MA, Hill MC, Chmielowiec J, Yang D, Teaw J, Sheng K, Kong Y, Bettini M, Zong C, Martin JF, Borowiak M.

Nat Commun. 2018 Aug 22;9(1):3356. doi: 10.1038/s41467-018-05740-1.


Complete Genome Sequence of an Avian Native NDM-1-Producing Salmonella enterica subsp. enterica Serovar Corvallis Strain.

Hadziabdic S, Borowiak M, Bloch A, Malorny B, Szabo I, Guerra B, Kaesbohrer A, Fischer J.

Genome Announc. 2018 Jun 28;6(26). pii: e00593-18. doi: 10.1128/genomeA.00593-18.


Generation of Scaffold-free, Three-dimensional Insulin Expressing Pancreatoids from Mouse Pancreatic Progenitors In Vitro.

Scavuzzo MA, Teaw J, Yang D, Borowiak M.

J Vis Exp. 2018 Jun 2;(136). doi: 10.3791/57599.


Complete Genome Sequence of a VIM-1-Producing Salmonella enterica subsp. enterica Serovar Infantis Isolate Derived from Minced Pork Meat.

Borowiak M, Fischer J, Baumann B, Hammerl JA, Szabo I, Malorny B.

Genome Announc. 2018 Apr 26;6(17). pii: e00327-18. doi: 10.1128/genomeA.00327-18.


mcr-5 and a novel mcr-5.2 variant in Escherichia coli isolates from food and food-producing animals, Germany, 2010 to 2017.

Hammerl JA, Borowiak M, Schmoger S, Shamoun D, Grobbel M, Malorny B, Tenhagen BA, Käsbohrer A.

J Antimicrob Chemother. 2018 May 1;73(5):1433-1435. doi: 10.1093/jac/dky020. No abstract available.


Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes.

Rebelo AR, Bortolaia V, Kjeldgaard JS, Pedersen SK, Leekitcharoenphon P, Hansen IM, Guerra B, Malorny B, Borowiak M, Hammerl JA, Battisti A, Franco A, Alba P, Perrin-Guyomard A, Granier SA, De Frutos Escobar C, Malhotra-Kumar S, Villa L, Carattoli A, Hendriksen RS.

Euro Surveill. 2018 Feb;23(6). doi: 10.2807/1560-7917.ES.2018.23.6.17-00672. Erratum in: Euro Surveill. 2018 Feb;23(7):.


In Vivo Transfer and Microevolution of Avian Native IncA/C2blaNDM-1-Carrying Plasmid pRH-1238 during a Broiler Chicken Infection Study.

Hadziabdic S, Fischer J, Malorny B, Borowiak M, Guerra B, Kaesbohrer A, Gonzalez-Zorn B, Szabo I.

Antimicrob Agents Chemother. 2018 Mar 27;62(4). pii: e02128-17. doi: 10.1128/AAC.02128-17. Print 2018 Apr.


HTLV-1 Tax plugs and freezes UPF1 helicase leading to nonsense-mediated mRNA decay inhibition.

Fiorini F, Robin JP, Kanaan J, Borowiak M, Croquette V, Le Hir H, Jalinot P, Mocquet V.

Nat Commun. 2018 Jan 30;9(1):431. doi: 10.1038/s41467-017-02793-6.


High self-reactivity drives T-bet and potentiates Treg function in tissue-specific autoimmunity.

Sprouse ML, Scavuzzo MA, Blum S, Shevchenko I, Lee T, Makedonas G, Borowiak M, Bettini ML, Bettini M.

JCI Insight. 2018 Jan 25;3(2). pii: 97322. doi: 10.1172/jci.insight.97322. eCollection 2018 Jan 25.


Cutting Edge: Low-Affinity TCRs Support Regulatory T Cell Function in Autoimmunity.

Sprouse ML, Shevchenko I, Scavuzzo MA, Joseph F, Lee T, Blum S, Borowiak M, Bettini ML, Bettini M.

J Immunol. 2018 Feb 1;200(3):909-914. doi: 10.4049/jimmunol.1700156. Epub 2017 Dec 27.


Erratum: A novel humanized mouse lacking murine p450 oxidoreductase for studying human drug metabolism.

Barzi M, Pankowicz FP, Zorman B, Liu X, Legras X, Yang D, Borowiak M, Bissig-Choisat B, Sumazin P, Li F, Bissig KD.

Nat Commun. 2017 Oct 17;8(1):984. doi: 10.1038/s41467-017-01314-9.


Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B.

Borowiak M, Fischer J, Hammerl JA, Hendriksen RS, Szabo I, Malorny B.

J Antimicrob Chemother. 2017 Dec 1;72(12):3317-3324. doi: 10.1093/jac/dkx327.


Molecular Tracing to Find Source of Protracted Invasive Listeriosis Outbreak, Southern Germany, 2012-2016.

Kleta S, Hammerl JA, Dieckmann R, Malorny B, Borowiak M, Halbedel S, Prager R, Trost E, Flieger A, Wilking H, Vygen-Bonnet S, Busch U, Messelhäußer U, Horlacher S, Schönberger K, Lohr D, Aichinger E, Luber P, Hensel A, Al Dahouk S.

Emerg Infect Dis. 2017 Oct;23(10):1680-1683. doi: 10.3201/eid2310.161623.


Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Paratyphi B Sequence Type 28 Harboring mcr-1.

Borowiak M, Hammerl JA, Fischer J, Szabo I, Malorny B.

Genome Announc. 2017 Sep 14;5(37). pii: e00991-17. doi: 10.1128/genomeA.00991-17.


Organotypic pancreatoids with native mesenchyme develop Insulin producing endocrine cells.

Scavuzzo MA, Yang D, Borowiak M.

Sci Rep. 2017 Sep 7;7(1):10810. doi: 10.1038/s41598-017-11169-1.


A novel humanized mouse lacking murine P450 oxidoreductase for studying human drug metabolism.

Barzi M, Pankowicz FP, Zorman B, Liu X, Legras X, Yang D, Borowiak M, Bissig-Choisat B, Sumazin P, Li F, Bissig KD.

Nat Commun. 2017 Jun 28;8(1):39. doi: 10.1038/s41467-017-00049-x. Erratum in: Nat Commun. 2017 Oct 17;8(1):984.


TCF7L1 promotes skin tumorigenesis independently of β-catenin through induction of LCN2.

Ku AT, Shaver TM, Rao AS, Howard JM, Rodriguez CN, Miao Q, Garcia G, Le D, Yang D, Borowiak M, Cohen DN, Chitsazzadeh V, Diwan AH, Tsai KY, Nguyen H.

Elife. 2017 May 3;6. pii: e23242. doi: 10.7554/eLife.23242.


VIM-1-producing Salmonella Infantis isolated from swine and minced pork meat in Germany.

Borowiak M, Szabo I, Baumann B, Junker E, Hammerl JA, Kaesbohrer A, Malorny B, Fischer J.

J Antimicrob Chemother. 2017 Jul 1;72(7):2131-2133. doi: 10.1093/jac/dkx101. No abstract available.


Editing genetics, stem cells are prophetic, what's the best way to model cells of diabetics?

Scavuzzo MA, Borowiak M.

Stem Cell Investig. 2016 Nov 15;3:81. doi: 10.21037/sci.2016.11.02. eCollection 2016. No abstract available.


Cell-Free Systems Based on CHO Cell Lysates: Optimization Strategies, Synthesis of "Difficult-to-Express" Proteins and Future Perspectives.

Thoring L, Wüstenhagen DA, Borowiak M, Stech M, Sonnabend A, Kubick S.

PLoS One. 2016 Sep 29;11(9):e0163670. doi: 10.1371/journal.pone.0163670. eCollection 2016.


Reprogramming metabolic pathways in vivo with CRISPR/Cas9 genome editing to treat hereditary tyrosinaemia.

Pankowicz FP, Barzi M, Legras X, Hubert L, Mi T, Tomolonis JA, Ravishankar M, Sun Q, Yang D, Borowiak M, Sumazin P, Elsea SH, Bissig-Choisat B, Bissig KD.

Nat Commun. 2016 Aug 30;7:12642. doi: 10.1038/ncomms12642.


Novel patient-derived xenograft and cell line models for therapeutic testing of pediatric liver cancer.

Bissig-Choisat B, Kettlun-Leyton C, Legras XD, Zorman B, Barzi M, Chen LL, Amin MD, Huang YH, Pautler RG, Hampton OA, Prakash MM, Yang D, Borowiak M, Muzny D, Doddapaneni HV, Hu J, Shi Y, Gaber MW, Hicks MJ, Thompson PA, Lu Y, Mills GB, Finegold M, Goss JA, Parsons DW, Vasudevan SA, Sumazin P, López-Terrada D, Bissig KD.

J Hepatol. 2016 Aug;65(2):325-33. doi: 10.1016/j.jhep.2016.04.009. Epub 2016 Apr 23.


Towards personalized diagnostics via longitudinal study of the human plasma N-glycome.

Hennig R, Cajic S, Borowiak M, Hoffmann M, Kottler R, Reichl U, Rapp E.

Biochim Biophys Acta. 2016 Aug;1860(8):1728-38. doi: 10.1016/j.bbagen.2016.03.035. Epub 2016 Mar 31.


Enrichment of G2/M cell cycle phase in human pluripotent stem cells enhances HDR-mediated gene repair with customizable endonucleases.

Yang D, Scavuzzo MA, Chmielowiec J, Sharp R, Bajic A, Borowiak M.

Sci Rep. 2016 Feb 18;6:21264. doi: 10.1038/srep21264.


N-Glycosylation Fingerprinting of Viral Glycoproteins by xCGE-LIF.

Hennig R, Rapp E, Kottler R, Cajic S, Borowiak M, Reichl U.

Methods Mol Biol. 2015;1331:123-43. doi: 10.1007/978-1-4939-2874-3_8.


Photoswitchable Inhibitors of Microtubule Dynamics Optically Control Mitosis and Cell Death.

Borowiak M, Nahaboo W, Reynders M, Nekolla K, Jalinot P, Hasserodt J, Rehberg M, Delattre M, Zahler S, Vollmar A, Trauner D, Thorn-Seshold O.

Cell. 2015 Jul 16;162(2):403-411. doi: 10.1016/j.cell.2015.06.049. Epub 2015 Jul 9.


Associations between the incidence of antiphosphatidylserine and antiphosphatidylethanolamine antibodies and clinical manifestations of systemic lupus erythematosus.

Butkiewicz F, Kaszuba M, Brzeziński M, Iżbicki J, Kubiś M, Lopiński H, Borowiak M, Szelepajło M, Fischer K, Fliciński J.

Pol Arch Med Wewn. 2014;124(11):573-8. Epub 2014 Sep 15.


In vitro differentiation and expansion of human pluripotent stem cell-derived pancreatic progenitors.

Chmielowiec J, Borowiak M.

Rev Diabet Stud. 2014 Spring;11(1):19-34. doi: 10.1900/RDS.2014.11.19. Epub 2014 May 10. Review.


Human T-cell leukemia virus type 3 (HTLV-3) and HTLV-4 antisense-transcript-encoded proteins interact and transactivate Jun family-dependent transcription via their atypical bZIP motif.

Larocque É, André-Arpin C, Borowiak M, Lemay G, Switzer WM, Duc Dodon M, Mesnard JM, Barbeau B.

J Virol. 2014 Aug;88(16):8956-70. doi: 10.1128/JVI.01094-14. Epub 2014 May 28.


Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research.

Huffman JE, Pučić-Baković M, Klarić L, Hennig R, Selman MH, Vučković F, Novokmet M, Krištić J, Borowiak M, Muth T, Polašek O, Razdorov G, Gornik O, Plomp R, Theodoratou E, Wright AF, Rudan I, Hayward C, Campbell H, Deelder AM, Reichl U, Aulchenko YS, Rapp E, Wuhrer M, Lauc G.

Mol Cell Proteomics. 2014 Jun;13(6):1598-610. doi: 10.1074/mcp.M113.037465. Epub 2014 Apr 9.


Time-resolved emission spectra of 4-dimethylamino-4'-cyano-stilbene and resveratrol in high viscosity solvents and silica matrices.

Borowiak M, Grobelna B, Synak A, Bojarski P, Kubicki AA.

Spectrochim Acta A Mol Biomol Spectrosc. 2013 Nov;115:111-7. doi: 10.1016/j.saa.2013.06.036. Epub 2013 Jun 19.


HTLV-1 bZIP factor impedes the menin tumor suppressor and upregulates JunD-mediated transcription of the hTERT gene.

Borowiak M, Kuhlmann AS, Girard S, Gazzolo L, Mesnard JM, Jalinot P, Dodon MD.

Carcinogenesis. 2013 Nov;34(11):2664-72. doi: 10.1093/carcin/bgt221. Epub 2013 Jun 19.


Acute administration of antibiotics modulates intestinal capillary perfusion and leukocyte adherence during experimental sepsis.

Al-Banna NA, Pavlovic D, Bac VH, Utpatel K, Janke E, Rippke JN, Borowiak M, Cerny V, Spassov A, Johnston B, Issekutz TB, Lehmann CH.

Int J Antimicrob Agents. 2013 Jun;41(6):536-43. doi: 10.1016/j.ijantimicag.2013.02.024. Epub 2013 Apr 24.


Functional evaluation of ES cell-derived endodermal populations reveals differences between Nodal and Activin A-guided differentiation.

Chen AE, Borowiak M, Sherwood RI, Kweudjeu A, Melton DA.

Development. 2013 Feb 1;140(3):675-86. doi: 10.1242/dev.085431.


Self-renewal of embryonic-stem-cell-derived progenitors by organ-matched mesenchyme.

Sneddon JB, Borowiak M, Melton DA.

Nature. 2012 Nov 29;491(7426):765-8. doi: 10.1038/nature11463. Epub 2012 Oct 7.


The new generation of beta-cells: replication, stem cell differentiation, and the role of small molecules.

Borowiak M.

Rev Diabet Stud. 2010 Summer;7(2):93-104. doi: 10.1900/RDS.2010.7.93. Epub 2010 Aug 10. Review.


Optimized workflow for preparation of APTS-labeled N-glycans allowing high-throughput analysis of human plasma glycomes using 48-channel multiplexed CGE-LIF.

Ruhaak LR, Hennig R, Huhn C, Borowiak M, Dolhain RJ, Deelder AM, Rapp E, Wuhrer M.

J Proteome Res. 2010 Dec 3;9(12):6655-64. doi: 10.1021/pr100802f. Epub 2010 Nov 2.


How to make beta cells?

Borowiak M, Melton DA.

Curr Opin Cell Biol. 2009 Dec;21(6):727-32. doi: 10.1016/ Epub 2009 Sep 24. Review.

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