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Items: 1 to 50 of 79

1.

Distinctive ligand-binding specificities of tandem PA14 biomass-sensory elements from Clostridium thermocellum and Clostridium clariflavum.

Grinberg IR, Yaniv O, de Ora LO, Muñoz-Gutiérrez I, Hershko A, Livnah O, Bayer EA, Borovok I, Frolow F, Lamed R, Voronov-Goldman M.

Proteins. 2019 Jun 4. doi: 10.1002/prot.25753. [Epub ahead of print]

PMID:
31162722
2.

Fecal Proteases from Pouchitis Patients Activate Protease Activating Receptor-2 to Disrupt the Epithelial Barrier.

Hoffman S, Cohen NA, Carroll IM, Tulchinsky H, Borovok I, Dotan I, Maharshak N.

J Crohns Colitis. 2019 May 6. pii: jjz086. doi: 10.1093/ecco-jcc/jjz086. [Epub ahead of print]

PMID:
31056700
3.

Controlled branched-chain amino acids auxotrophy in Listeria monocytogenes allows isoleucine to serve as a host signal and virulence effector.

Brenner M, Lobel L, Borovok I, Sigal N, Herskovits AA.

PLoS Genet. 2018 Mar 12;14(3):e1007283. doi: 10.1371/journal.pgen.1007283. eCollection 2018 Mar.

4.

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit.

Rozman Grinberg I, Lundin D, Hasan M, Crona M, Jonna VR, Loderer C, Sahlin M, Markova N, Borovok I, Berggren G, Hofer A, Logan DT, Sjöberg BM.

Elife. 2018 Feb 1;7. pii: e31529. doi: 10.7554/eLife.31529.

5.

Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme.

Dassa B, Borovok I, Lombard V, Henrissat B, Lamed R, Bayer EA, Moraïs S.

Microorganisms. 2017 Nov 18;5(4). pii: E74. doi: 10.3390/microorganisms5040074.

6.

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

Yoav S, Barak Y, Shamshoum M, Borovok I, Lamed R, Dassa B, Hadar Y, Morag E, Bayer EA.

Biotechnol Biofuels. 2017 Sep 18;10:222. doi: 10.1186/s13068-017-0909-7. eCollection 2017.

7.

Temperate bacteriophages as regulators of host behavior.

Argov T, Azulay G, Pasechnek A, Stadnyuk O, Ran-Sapir S, Borovok I, Sigal N, Herskovits AA.

Curr Opin Microbiol. 2017 Aug;38:81-87. doi: 10.1016/j.mib.2017.05.002. Epub 2017 May 23. Review.

PMID:
28544996
8.

Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions.

Israeli-Ruimy V, Bule P, Jindou S, Dassa B, Moraïs S, Borovok I, Barak Y, Slutzki M, Hamberg Y, Cardoso V, Alves VD, Najmudin S, White BA, Flint HJ, Gilbert HJ, Lamed R, Fontes CM, Bayer EA.

Sci Rep. 2017 Feb 10;7:42355. doi: 10.1038/srep42355.

9.

Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum.

Ortiz de Ora L, Muñoz-Gutiérrez I, Bayer EA, Shoham Y, Lamed R, Borovok I.

Appl Environ Microbiol. 2017 Mar 31;83(8). pii: e03088-16. doi: 10.1128/AEM.03088-16. Print 2017 Apr 15.

10.

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD.

Genome Announc. 2016 Sep 29;4(5). pii: e01043-16. doi: 10.1128/genomeA.01043-16.

11.

High Prevalence of Diverse Insertion Sequences within the rRNA Operons of Mycoplasma bovis.

Amram E, Borovok I, Nachum-Biala Y, Ayling R, Lerner U, Harrus S, Lysnyansky I.

Appl Environ Microbiol. 2016 Oct 14;82(21):6386-6394. Print 2016 Nov 1.

12.

Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System.

Muñoz-Gutiérrez I, Ortiz de Ora L, Rozman Grinberg I, Garty Y, Bayer EA, Shoham Y, Lamed R, Borovok I.

PLoS One. 2016 Jan 5;11(1):e0146316. doi: 10.1371/journal.pone.0146316. eCollection 2016.

13.

Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.

Dassa B, Utturkar S, Hurt RA, Klingeman DM, Keller M, Xu J, Reddy YH, Borovok I, Rozman Grinberg I, Lamed R, Zhivin O, Bayer EA, Brown SD.

Genome Announc. 2015 Sep 24;3(5). pii: e01022-15. doi: 10.1128/genomeA.01022-15.

14.

A new perspective on lysogeny: prophages as active regulatory switches of bacteria.

Feiner R, Argov T, Rabinovich L, Sigal N, Borovok I, Herskovits AA.

Nat Rev Microbiol. 2015 Oct;13(10):641-50. doi: 10.1038/nrmicro3527. Review.

PMID:
26373372
15.

An Extended Cyclic Di-GMP Network in the Predatory Bacterium Bdellovibrio bacteriovorus.

Rotem O, Nesper J, Borovok I, Gorovits R, Kolot M, Pasternak Z, Shin I, Glatter T, Pietrokovski S, Jenal U, Jurkevitch E.

J Bacteriol. 2015 Aug 31;198(1):127-37. doi: 10.1128/JB.00422-15. Print 2016 Jan 1.

16.

Three cellulosomal xylanase genes in Clostridium thermocellum are regulated by both vegetative SigA (σ(A)) and alternative SigI6 (σ(I6)) factors.

Sand A, Holwerda EK, Ruppertsberger NM, Maloney M, Olson DG, Nataf Y, Borovok I, Sonenshein AL, Bayer EA, Lamed R, Lynd LR, Shoham Y.

FEBS Lett. 2015 Oct 7;589(20 Pt B):3133-40. doi: 10.1016/j.febslet.2015.08.026. Epub 2015 Aug 29.

17.

Standalone cohesin as a molecular shuttle in cellulosome assembly.

Voronov-Goldman M, Yaniv O, Gul O, Yoffe H, Salama-Alber O, Slutzki M, Levy-Assaraf M, Jindou S, Shimon LJ, Borovok I, Bayer EA, Lamed R, Frolow F.

FEBS Lett. 2015 Jun 22;589(14):1569-76. doi: 10.1016/j.febslet.2015.04.013. Epub 2015 Apr 17.

18.

Ruminococcal cellulosome systems from rumen to human.

Ben David Y, Dassa B, Borovok I, Lamed R, Koropatkin NM, Martens EC, White BA, Bernalier-Donadille A, Duncan SH, Flint HJ, Bayer EA, Moraïs S.

Environ Microbiol. 2015 Sep;17(9):3407-26. doi: 10.1111/1462-2920.12868. Epub 2015 May 7.

19.

Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.

Rozman Grinberg I, Yin G, Borovok I, Berg Miller ME, Yeoman CJ, Dassa B, Yu Z, Mizrahi I, Flint HJ, Bayer EA, White BA, Lamed R.

FEMS Microbiol Lett. 2015 Jan;362(3):1-10. doi: 10.1093/femsle/fnu047. Epub 2014 Dec 22.

20.

The metabolic regulator CodY links Listeria monocytogenes metabolism to virulence by directly activating the virulence regulatory gene prfA.

Lobel L, Sigal N, Borovok I, Belitsky BR, Sonenshein AL, Herskovits AA.

Mol Microbiol. 2015 Feb;95(4):624-44. doi: 10.1111/mmi.12890. Epub 2014 Dec 30.

21.

Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.

Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA.

PLoS One. 2014 Jul 3;9(7):e99221. doi: 10.1371/journal.pone.0099221. eCollection 2014.

22.

Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

Voronov-Goldman M, Levy-Assaraf M, Yaniv O, Wisserman G, Jindou S, Borovok I, Bayer EA, Lamed R, Shimon LJ, Frolow F.

Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):450-6. doi: 10.1107/S2053230X14004051. Epub 2014 Mar 25.

23.

Fine-structural variance of family 3 carbohydrate-binding modules as extracellular biomass-sensing components of Clostridium thermocellum anti-σI factors.

Yaniv O, Fichman G, Borovok I, Shoham Y, Bayer EA, Lamed R, Shimon LJ, Frolow F.

Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):522-34. doi: 10.1107/S139900471302926X. Epub 2014 Jan 31.

PMID:
24531486
24.

Cellulosomics of the cellulolytic thermophile Clostridium clariflavum.

Artzi L, Dassa B, Borovok I, Shamshoum M, Lamed R, Bayer EA.

Biotechnol Biofuels. 2014 Jul 1;7:100. doi: 10.1186/1754-6834-7-100. eCollection 2014.

25.

Draft Genome Sequence of the Cellulolytic Bacterium Clostridium papyrosolvens C7 (ATCC 700395).

Zepeda V, Dassa B, Borovok I, Lamed R, Bayer EA, Cate JH.

Genome Announc. 2013 Sep 12;1(5). pii: e00698-13. doi: 10.1128/genomeA.00698-13.

26.

Structure of a family 3a carbohydrate-binding module from the cellulosomal scaffoldin CipA of Clostridium thermocellum with flanking linkers: implications for cellulosome structure.

Yaniv O, Morag E, Borovok I, Bayer EA, Lamed R, Frolow F, Shimon LJ.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jul;69(Pt 7):733-7. doi: 10.1107/S174430911301614X. Epub 2013 Jun 27.

27.

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum.

Xu C, Huang R, Teng L, Wang D, Hemme CL, Borovok I, He Q, Lamed R, Bayer EA, Zhou J, Xu J.

Biotechnol Biofuels. 2013 May 8;6(1):73. doi: 10.1186/1754-6834-6-73.

28.

Distribution and infection-related functions of bacillithiol in Staphylococcus aureus.

Pöther DC, Gierok P, Harms M, Mostertz J, Hochgräfe F, Antelmann H, Hamilton CJ, Borovok I, Lalk M, Aharonowitz Y, Hecker M.

Int J Med Microbiol. 2013 Apr;303(3):114-23. doi: 10.1016/j.ijmm.2013.01.003. Epub 2013 Mar 6.

PMID:
23517692
29.

Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases.

Levy-Assaraf M, Voronov-Goldman M, Rozman Grinberg I, Weiserman G, Shimon LJ, Jindou S, Borovok I, White BA, Bayer EA, Lamed R, Frolow F.

PLoS One. 2013;8(2):e56138. doi: 10.1371/journal.pone.0056138. Epub 2013 Feb 14.

30.

Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence.

Lobel L, Sigal N, Borovok I, Ruppin E, Herskovits AA.

PLoS Genet. 2012 Sep;8(9):e1002887. doi: 10.1371/journal.pgen.1002887. Epub 2012 Sep 6.

31.

Prophage excision activates Listeria competence genes that promote phagosomal escape and virulence.

Rabinovich L, Sigal N, Borovok I, Nir-Paz R, Herskovits AA.

Cell. 2012 Aug 17;150(4):792-802. doi: 10.1016/j.cell.2012.06.036.

32.

Bacterial cadherin domains as carbohydrate binding modules: determination of affinity constants to insoluble complex polysaccharides.

Fraiberg M, Borovok I, Weiner RM, Lamed R, Bayer EA.

Methods Mol Biol. 2012;908:109-18. doi: 10.1007/978-1-61779-956-3_11.

PMID:
22843394
33.

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.

Dassa B, Borovok I, Lamed R, Henrissat B, Coutinho P, Hemme CL, Huang Y, Zhou J, Bayer EA.

BMC Genomics. 2012 May 30;13:210. doi: 10.1186/1471-2164-13-210.

34.

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

Brown SD, Lamed R, Morag E, Borovok I, Shoham Y, Klingeman DM, Johnson CM, Yang Z, Land ML, Utturkar SM, Keller M, Bayer EA.

J Bacteriol. 2012 Jun;194(12):3290-1. doi: 10.1128/JB.00473-12.

35.

Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen.

Brulc JM, Yeoman CJ, Wilson MK, Berg Miller ME, Jeraldo P, Jindou S, Goldenfeld N, Flint HJ, Lamed R, Borovok I, Vodovnik M, Nelson KE, Bayer EA, White BA.

PLoS One. 2011;6(10):e25329. doi: 10.1371/journal.pone.0025329. Epub 2011 Oct 17.

36.

Implications of the inability of Listeria monocytogenes EGD-e to grow anaerobically due to a deletion in the class III NrdD ribonucleotide reductase for its use as a model laboratory strain.

Ofer A, Kreft J, Logan DT, Cohen G, Borovok I, Aharonowitz Y.

J Bacteriol. 2011 Jun;193(12):2931-40. doi: 10.1128/JB.01405-10. Epub 2011 Apr 8.

37.

Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.

Fraiberg M, Borovok I, Bayer EA, Weiner RM, Lamed R.

J Bacteriol. 2011 Jan;193(1):283-5. doi: 10.1128/JB.00842-10. Epub 2010 Oct 29.

38.

Noncellulosomal cohesin from the hyperthermophilic archaeon Archaeoglobus fulgidus.

Voronov-Goldman M, Lamed R, Noach I, Borovok I, Kwiat M, Rosenheck S, Shimon LJ, Bayer EA, Frolow F.

Proteins. 2011 Jan;79(1):50-60. doi: 10.1002/prot.22857. Epub 2010 Oct 15.

PMID:
20954171
39.

Clostridium thermocellum cellulosomal genes are regulated by extracytoplasmic polysaccharides via alternative sigma factors.

Nataf Y, Bahari L, Kahel-Raifer H, Borovok I, Lamed R, Bayer EA, Sonenshein AL, Shoham Y.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18646-51. doi: 10.1073/pnas.1012175107. Epub 2010 Oct 11.

40.

High efficiency of a sequential recombinase-mediated cassette exchange reaction in Escherichia coli.

Malchin N, Molotsky T, Borovok I, Voziyanov Y, Kotlyar AB, Yagil E, Kolot M.

J Mol Microbiol Biotechnol. 2010;19(3):117-22. doi: 10.1159/000321497. Epub 2010 Oct 6.

41.

Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum.

Bahari L, Gilad Y, Borovok I, Kahel-Raifer H, Dassa B, Nataf Y, Shoham Y, Lamed R, Bayer EA.

J Ind Microbiol Biotechnol. 2011 Jul;38(7):825-32. doi: 10.1007/s10295-010-0848-9. Epub 2010 Sep 6.

PMID:
20820855
42.

Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, Borovok I, Lamed R, Bayer EA, Henrissat B, Coutinho PM, Antonopoulos DA, Berg Miller ME, White BA.

PLoS One. 2010 Aug 30;5(8):e12476. doi: 10.1371/journal.pone.0012476.

43.

Staphylococcus aureus NrdH redoxin is a reductant of the class Ib ribonucleotide reductase.

Rabinovitch I, Yanku M, Yeheskel A, Cohen G, Borovok I, Aharonowitz Y.

J Bacteriol. 2010 Oct;192(19):4963-72. doi: 10.1128/JB.00539-10. Epub 2010 Jul 30.

44.

The unique set of putative membrane-associated anti-sigma factors in Clostridium thermocellum suggests a novel extracellular carbohydrate-sensing mechanism involved in gene regulation.

Kahel-Raifer H, Jindou S, Bahari L, Nataf Y, Shoham Y, Bayer EA, Borovok I, Lamed R.

FEMS Microbiol Lett. 2010 Jul 1;308(1):84-93. doi: 10.1111/j.1574-6968.2010.01997.x. Epub 2010 Apr 23.

45.

Discovery and characterization of cadherin domains in Saccharophagus degradans 2-40.

Fraiberg M, Borovok I, Weiner RM, Lamed R.

J Bacteriol. 2010 Feb;192(4):1066-74. doi: 10.1128/JB.01236-09. Epub 2009 Dec 18.

46.

Diamide triggers mainly S Thiolations in the cytoplasmic proteomes of Bacillus subtilis and Staphylococcus aureus.

Pöther DC, Liebeke M, Hochgräfe F, Antelmann H, Becher D, Lalk M, Lindequist U, Borovok I, Cohen G, Aharonowitz Y, Hecker M.

J Bacteriol. 2009 Dec;191(24):7520-30. doi: 10.1128/JB.00937-09. Epub 2009 Oct 16.

47.

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.

Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA.

PLoS One. 2009 Aug 14;4(8):e6650. doi: 10.1371/journal.pone.0006650.

48.

Identification and characterization of gshA, a gene encoding the glutamate-cysteine ligase in the halophilic archaeon Haloferax volcanii.

Malki L, Yanku M, Borovok I, Cohen G, Mevarech M, Aharonowitz Y.

J Bacteriol. 2009 Aug;191(16):5196-204. doi: 10.1128/JB.00297-09. Epub 2009 Jun 12.

49.

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.

Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Hüser AT, Hansmeier N, Pühler A, Borovok I, Tauch A.

Microbiology. 2009 May;155(Pt 5):1459-77. doi: 10.1099/mic.0.025841-0. Epub 2009 Apr 16.

PMID:
19372162
50.

Crystallization and preliminary X-ray analysis of a cohesin-like module from AF2375 of the archaeon Archaeoglobus fulgidus.

Voronov-Goldman M, Noach I, Lamed R, Shimon LJ, Borovok I, Bayer EA, Frolow F.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):275-8. doi: 10.1107/S1744309109002887. Epub 2009 Feb 26.

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