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Items: 14

1.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

PMID:
29892093
2.

De Novo Assembly of Complete Chloroplast Genomes from Non-model Species Based on a K-mer Frequency-Based Selection of Chloroplast Reads from Total DNA Sequences.

Izan S, Esselink D, Visser RGF, Smulders MJM, Borm T.

Front Plant Sci. 2017 Aug 2;8:1271. doi: 10.3389/fpls.2017.01271. eCollection 2017.

3.

Corrigendum: The genome of Chenopodium quinoa.

Jarvis DE, Ho YS, Lightfoot DJ, Schmöckel SM, Li B, Borm TJA, Ohyanagi H, Mineta K, Michell CT, Saber N, Kharbatia NM, Rupper RR, Sharp AR, Dally N, Boughton BA, Woo YH, Gao G, Schijlen EGWM, Guo X, Momin AA, Negrão S, Al-Babili S, Gehring C, Roessner U, Jung C, Murphy K, Arold ST, Gojobori T, van der Linden CG, van Loo EN, Jellen EN, Maughan PJ, Tester M.

Nature. 2017 May 25;545(7655):510. doi: 10.1038/nature22384. Epub 2017 May 10.

PMID:
28489823
4.

A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U.

Li P, Zhang S, Li F, Zhang S, Zhang H, Wang X, Sun R, Bonnema G, Borm TJ.

Front Plant Sci. 2017 Feb 2;8:111. doi: 10.3389/fpls.2017.00111. eCollection 2017.

5.

The genome of Chenopodium quinoa.

Jarvis DE, Ho YS, Lightfoot DJ, Schmöckel SM, Li B, Borm TJ, Ohyanagi H, Mineta K, Michell CT, Saber N, Kharbatia NM, Rupper RR, Sharp AR, Dally N, Boughton BA, Woo YH, Gao G, Schijlen EG, Guo X, Momin AA, Negrão S, Al-Babili S, Gehring C, Roessner U, Jung C, Murphy K, Arold ST, Gojobori T, Linden CG, van Loo EN, Jellen EN, Maughan PJ, Tester M.

Nature. 2017 Feb 16;542(7641):307-312. doi: 10.1038/nature21370. Epub 2017 Feb 8. Erratum in: Nature. 2017 May 25;545(7655):510.

PMID:
28178233
6.

Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection.

Cheng F, Wu J, Cai C, Fu L, Liang J, Borm T, Zhuang M, Zhang Y, Zhang F, Bonnema G, Wang X.

Sci Data. 2016 Dec 20;3:160119. doi: 10.1038/sdata.2016.119.

7.

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.

Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, Bucher J, Zhang N, Wang Y, Wang H, Deng J, Liao Y, Wei K, Zhang X, Fu L, Hu Y, Liu J, Cai C, Zhang S, Zhang S, Li F, Zhang H, Zhang J, Guo N, Liu Z, Liu J, Sun C, Ma Y, Zhang H, Cui Y, Freeling MR, Borm T, Bonnema G, Wu J, Wang X.

Nat Genet. 2016 Oct;48(10):1218-24. doi: 10.1038/ng.3634. Epub 2016 Aug 15.

PMID:
27526322
8.

Correction: A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato.

Uitdewilligen JG, Wolters AM, D'hoop BB, Borm TJ, Visser RG, van Eck HJ.

PLoS One. 2015 Oct 28;10(10):e0141940. doi: 10.1371/journal.pone.0141940. eCollection 2015. No abstract available.

9.

Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin.

de Boer JM, Datema E, Tang X, Borm TJ, Bakker EH, van Eck HJ, van Ham RC, de Jong H, Visser RG, Bachem CW.

BMC Genomics. 2015 May 10;16:374. doi: 10.1186/s12864-015-1578-1.

10.

A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato.

Uitdewilligen JG, Wolters AM, D'hoop BB, Borm TJ, Visser RG, van Eck HJ.

PLoS One. 2013 May 8;8(5):e62355. doi: 10.1371/journal.pone.0062355. Print 2013. Erratum in: PLoS One. 2015;10(10):e0141940.

11.

A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome.

de Boer JM, Borm TJ, Jesse T, Brugmans B, Wiggers-Perebolte L, de Leeuw L, Tang X, Bryan GJ, Bakker J, van Eck HJ, Visser RG.

BMC Genomics. 2011 Dec 5;12:594. doi: 10.1186/1471-2164-12-594. Erratum in: BMC Genomics. 2012;13:423. Wiggers-Perebolte, Lian [added]; de Leeuw, Linda [added].

12.

Genome sequence and analysis of the tuber crop potato.

Potato Genome Sequencing Consortium, Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, Ponce O, Martinez D, De la Cruz G, Chakrabarti SK, Patil VU, Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV, Di Genova A, Bolser DM, Martin DM, Li G, Yang Y, Kuang H, Hu Q, Xiong X, Bishop GJ, Sagredo B, Mejía N, Zagorski W, Gromadka R, Gawor J, Szczesny P, Huang S, Zhang Z, Liang C, He J, Li Y, He Y, Xu J, Zhang Y, Xie B, Du Y, Qu D, Bonierbale M, Ghislain M, Herrera Mdel R, Giuliano G, Pietrella M, Perrotta G, Facella P, O'Brien K, Feingold SE, Barreiro LE, Massa GA, Diambra L, Whitty BR, Vaillancourt B, Lin H, Massa AN, Geoffroy M, Lundback S, DellaPenna D, Buell CR, Sharma SK, Marshall DF, Waugh R, Bryan GJ, Destefanis M, Nagy I, Milbourne D, Thomson SJ, Fiers M, Jacobs JM, Nielsen KL, Sønderkær M, Iovene M, Torres GA, Jiang J, Veilleux RE, Bachem CW, de Boer J, Borm T, Kloosterman B, van Eck H, Datema E, Hekkert Bt, Goverse A, van Ham RC, Visser RG.

Nature. 2011 Jul 10;475(7355):189-95. doi: 10.1038/nature10158.

PMID:
21743474
13.

A genome-wide genetic map of NB-LRR disease resistance loci in potato.

Bakker E, Borm T, Prins P, van der Vossen E, Uenk G, Arens M, de Boer J, van Eck H, Muskens M, Vossen J, van der Linden G, van Ham R, Klein-Lankhorst R, Visser R, Smant G, Bakker J, Goverse A.

Theor Appl Genet. 2011 Aug;123(3):493-508. doi: 10.1007/s00122-011-1602-z. Epub 2011 May 18.

14.

Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.

Huang S, van der Vossen EA, Kuang H, Vleeshouwers VG, Zhang N, Borm TJ, van Eck HJ, Baker B, Jacobsen E, Visser RG.

Plant J. 2005 Apr;42(2):251-61.

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