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Items: 23

1.

DISSEQT-DIStribution-based modeling of SEQuence space Time dynamics.

Henningsson R, Moratorio G, Bordería AV, Vignuzzi M, Fontes M.

Virus Evol. 2019 Aug 5;5(2):vez028. doi: 10.1093/ve/vez028. eCollection 2019 Jul.

2.

Long-term context-dependent genetic adaptation of the viral genetic cloud.

Braun T, Bordería AV, Barbezange C, Vignuzzi M, Louzoun Y.

Bioinformatics. 2019 Jun 1;35(11):1907-1915. doi: 10.1093/bioinformatics/bty891.

PMID:
30346482
3.

Attenuation of RNA viruses by redirecting their evolution in sequence space.

Moratorio G, Henningsson R, Barbezange C, Carrau L, Bordería AV, Blanc H, Beaucourt S, Poirier EZ, Vallet T, Boussier J, Mounce BC, Fontes M, Vignuzzi M.

Nat Microbiol. 2017 Jun 5;2:17088. doi: 10.1038/nmicrobiol.2017.88.

PMID:
28581455
4.

Increasing Clinical Severity during a Dengue Virus Type 3 Cuban Epidemic: Deep Sequencing of Evolving Viral Populations.

Rodriguez-Roche R, Blanc H, Bordería AV, Díaz G, Henningsson R, Gonzalez D, Santana E, Alvarez M, Castro O, Fontes M, Vignuzzi M, Guzman MG.

J Virol. 2016 Apr 14;90(9):4320-4333. doi: 10.1128/JVI.02647-15. Print 2016 May.

5.

Fidelity Variants and RNA Quasispecies.

Bordería AV, Rozen-Gagnon K, Vignuzzi M.

Curr Top Microbiol Immunol. 2016;392:303-22. Review.

PMID:
26499340
6.

Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype.

Bordería AV, Isakov O, Moratorio G, Henningsson R, Agüera-González S, Organtini L, Gnädig NF, Blanc H, Alcover A, Hafenstein S, Fontes M, Shomron N, Vignuzzi M.

PLoS Pathog. 2015 May 5;11(5):e1004838. doi: 10.1371/journal.ppat.1004838. eCollection 2015 May.

7.

Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.

Isakov O, Bordería AV, Golan D, Hamenahem A, Celniker G, Yoffe L, Blanc H, Vignuzzi M, Shomron N.

Bioinformatics. 2015 Jul 1;31(13):2141-50. doi: 10.1093/bioinformatics/btv101. Epub 2015 Feb 19.

8.

Emergence and transmission of arbovirus evolutionary intermediates with epidemic potential.

Stapleford KA, Coffey LL, Lay S, Bordería AV, Duong V, Isakov O, Rozen-Gagnon K, Arias-Goeta C, Blanc H, Beaucourt S, Haliloğlu T, Schmitt C, Bonne I, Ben-Tal N, Shomron N, Failloux AB, Buchy P, Vignuzzi M.

Cell Host Microbe. 2014 Jun 11;15(6):706-16. doi: 10.1016/j.chom.2014.05.008.

9.

Coxsackievirus B3 mutator strains are attenuated in vivo.

Gnädig NF, Beaucourt S, Campagnola G, Bordería AV, Sanz-Ramos M, Gong P, Blanc H, Peersen OB, Vignuzzi M.

Proc Natl Acad Sci U S A. 2012 Aug 21;109(34):E2294-303. doi: 10.1073/pnas.1204022109. Epub 2012 Aug 1.

10.

RNA virus population diversity: implications for inter-species transmission.

Bordería AV, Stapleford KA, Vignuzzi M.

Curr Opin Virol. 2011 Dec;1(6):643-8. doi: 10.1016/j.coviro.2011.09.012. Epub 2011 Oct 22. Review.

PMID:
22440922
11.

Arbovirus high fidelity variant loses fitness in mosquitoes and mice.

Coffey LL, Beeharry Y, Bordería AV, Blanc H, Vignuzzi M.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):16038-43. doi: 10.1073/pnas.1111650108. Epub 2011 Sep 6.

12.

Isolation of fidelity variants of RNA viruses and characterization of virus mutation frequency.

Beaucourt S, Bordería AV, Coffey LL, Gnädig NF, Sanz-Ramos M, Beeharry Y, Vignuzzi M.

J Vis Exp. 2011 Jun 16;(52). pii: 2953. doi: 10.3791/2953.

13.

Interplay between RNA structure and protein evolution in HIV-1.

Sanjuán R, Bordería AV.

Mol Biol Evol. 2011 Apr;28(4):1333-8. doi: 10.1093/molbev/msq329. Epub 2010 Dec 6. Review.

PMID:
21135148
14.

Dynamics of in vitro fitness recovery of HIV-1.

Lorenzo-Redondo R, Bordería AV, Lopez-Galindez C.

J Virol. 2011 Feb;85(4):1861-70. doi: 10.1128/JVI.01254-10. Epub 2010 Nov 24.

15.

Initial fitness recovery of HIV-1 is associated with quasispecies heterogeneity and can occur without modifications in the consensus sequence.

Bordería AV, Lorenzo-Redondo R, Pernas M, Casado C, Alvaro T, Domingo E, Lopez-Galindez C.

PLoS One. 2010 Apr 26;5(4):e10319. doi: 10.1371/journal.pone.0010319.

16.

Towards a genetic AIDS vaccine.

Bordería AV, Berkhout B.

Retrovirology. 2009 Oct 16;6:93. doi: 10.1186/1742-4690-6-93.

17.

Optimization of human immunodeficiency virus gag expression by newcastle disease virus vectors for the induction of potent immune responses.

Carnero E, Li W, Borderia AV, Moltedo B, Moran T, García-Sastre A.

J Virol. 2009 Jan;83(2):584-97. doi: 10.1128/JVI.01443-08. Epub 2008 Nov 12.

18.

Antiviral-activated dendritic cells: a paracrine-induced response state.

Bordería AV, Hartmann BM, Fernandez-Sesma A, Moran TM, Sealfon SC.

J Immunol. 2008 Nov 15;181(10):6872-6881.

19.

Selection promotes organ compartmentalization in HIV-1: evidence from gag and pol genes.

Bordería AV, Codoñer FM, Sanjuán R.

Evolution. 2007 Feb;61(2):272-9.

PMID:
17348938
20.

Few mutations in the 5' leader region mediate fitness recovery of debilitated human immunodeficiency type 1 viruses.

Yuste E, Bordería AV, Domingo E, López-Galíndez C.

J Virol. 2005 May;79(9):5421-7.

21.

Plasma RNA viral load is not associated with intrapatient quasispecies heterogeneity in HIV-1 infection.

Bello G, Casado C, García S, Rodríguez C, del Romero J, Borderia AV, López-Galíndez C.

Arch Virol. 2004 Sep;149(9):1761-71.

PMID:
15593418
22.

Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses.

Elena SF, Sanjuán R, Bordería AV, Turner PE.

Infect Genet Evol. 2001 Jul;1(1):41-8.

PMID:
12798049
23.

r- and K-selection in experimental populations of vesicular stomatitis virus.

Bordería AV, Elena SF.

Infect Genet Evol. 2002 Dec;2(2):137-43.

PMID:
12797990

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